|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00002527 ID=TCONS_00002527|Name=TCONS_00002527|organism=Clytia hemisphaerica|type=transcript|length=794bp
AAAAAAGAAGGAGAGTCAAAGAGTCTTACAGTcttagaacaaatttgtgt
gaTGGCATTGAACACAAAATGGCTTCCAAAGTGAAAGCACAAAGAACATG
CACTTTGTGCAAGAATGATAATAGAAATAAGAATGATTTCAACTGCATCT
CACAGCCACTAAAGGAAGATTTGTCTGCATTTTGCTGGATTTTACAGAAG
AAAATGCCAAAAGACTTTGCTTCCGACGACAGTTGCAGAATCTGCAACAA
gtgcaaaaagaaaattgttagGTCGTCAATGAAACGTTTGCAGGCACTTC
GACTTGTTGTTTCCACACAATTTCTAAACAAAGTCATGGATTTGTTTGGA
AAAGACCACGACCAGCCTTTGAAGGATGCAAAGGCATATCTTGAAGATAG
ACTGAAAACAGAAAATGAGCCAATTGCTGTACCGATTCCTGAATTTAACA
CTTCAATTGCCGGACAACTTCAGGACAAAGTGATTCCAAATACCAATGAC
AGTGATAGATGGAGGAAATACAATCCCATTGATGATATCACaccaacaat
ttttttgaaccatatattttttattttggatttAATATGGTAGAAAATGA
GTGCAGTAAGGGGTTTCCTAATGGGacttgcaattttttaaactattcaa
tttttcgttcttaAATAAACAACAGTctaaaaaaactcattttcggATAC
CCTACTGCTGAACTTCCTTGATttaagtttaaagttttttttaaatgcca
ATTTTTTCAGGTCCTAAAAGCAAAGTATTAGAAAGAGGACCAGA Run BLAST on NCBI transcript from alignment at sc0000020:865365..868376- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00002527 ID=TCONS_00002527|Name=TCONS_00002527|organism=Clytia hemisphaerica|type=transcript|length=3012bp|location=Sequence derived from alignment at sc0000020:865365..868376- (Clytia hemisphaerica)
AAAAAAGAAGGAGAGTCAAAGAGTCTTACAGTCTTAGAACAAATTTGTGT
GATGGCATTGAACACAAAATGGCTTCCAAAGTGAAAGCACAAAGAACATG
CACTTTGTGCAAGAATGATAATAGAAATAAGAATGATTTCAACTGCATCT
CACAGCCACTAAAGGAAGATTTGTCTGCATTTTGCTGGATTTTACAGAAG
AAAATGCCAAAAGACTTTGCTTCCGACGACAGTTGCAGAATCTGCAACAA
GTGCAAAAAGAAAATTGTTAGGGTAGGTAGTAGCATTCATTATAAAATTG
AATTTTATTGTACTTTATTGAAGCCTTGTTTGAAACATAATCCTAAACAA
ACGCGAGTTTAATTTGATGGAAATTCGATGCCTTTTACCTAAATTTTGTT
TGGAATTATAAAACAATACTCAAATTTCTAAAAGTTTGTTTGTCATTTGT
TTATTGACTTCTTCAAACGCCATTGATTGATGTGCTTTTAACATGCAAGC
AGCGAAATCATAGTGATTGCCAAGAGCAGAATTGCATAAAAGCTGTTGCA
AGTTAAGTCCGTATTGCAAGTTAAGTCCGTATTGCAAGTTATGGCAGTTC
AGGTTAATTCCTTTTATTCTTTTATTTTATATTTTACTTGCTTATTTTTT
ACAATACAGATGAAAAAGAACATGACCAAGCTCAAAGTTGAGATACAAGA
TTTCTTGTCAAAAATGGAACTATTAACTGATACAGAAACTTTAGACAGCT
CAAGAAACATCAGTAACATTAACAGACTGACAAGTGACAGGCAGACATTT
AATGCAGAGACAAGTGACACGAAGACATTTAACACAGGGACAAGTGACAG
GCAGACATTTAACACAGAGACAAGTGATAGGCAGACGTTTAACGCAGAGA
CAAGTGACAGGCAGACGTTTAACACAGAGACAAGTGACAGGCAGACGTTT
AACACAGAGACAAGTGACAGACAGACAAGTGACACAAAAACAATTGACAT
GGACACTTTGGACAAAGTAAGTACAAGTAATCTCGAGACAAGTAACGAAC
AGACAATTGACATGGTTATAAATGACGATAGACTTTTGAATGACAAAGAA
ACAAGTGACACACATCAAAATGACACACAGACAAATAATGGACAGACAAC
TGTTGAACCAGCAAGTGATGCCCAAACAAGTAATGGTGGAAATGAGTCAG
TTCTGGAGATGAAAAAATGTAAAACTCCGAAGGCATTCATACATGTTCAT
TGGCCTTCTGGTGAACGCAATCGTGAGGTAATAGTCACCTTGGGTCAATA
ATGGGACAGGACAGTAAAAATCATTTGTGACAGCCTCATATATCATGTTA
TTGTTACATATATTAACGTTGAGACAAAAAGTCTTTTTTAAAGTTCTAAT
TTGATTTATTATCACATACTACAGTATTTCAATTTTATTTCAATTTAATT
CAATTCTAGATCAAATCCGACCTAAACCCCTTAGCTGTCTGTCTTTTGAG
AGGGACTTACAGTGACATTGCTAAAAAGTGTTGGAAACACGAGGTCTTAA
AGAAAGAGATTTTCAAACTGGTGCAAAAAGATATCGACAATGAAACAGTG
ATGATTTGCAAGAAAAAGGTATTTAACTGGGTGCATGTCACTAGTCCAAC
ACTTTCTAGTCCAACAGTAAAATAGTCCGAATCTATTTTAAAATAAATTT
ACAATTTAGAAGTCTTTTTTTCTGACGTCACTTTTGTCAGAAAACAAAAG
ATTTTAGAATGTTGAATAAGGGTTTTTCATTGAGATAATATTAATAAAAG
TTCATTATGGTGGCATTTTGACATAATTAGAAATAAAGGACCAATCAAAT
TTGCTTTATTTGGACCTGTTTGGACCATTAAAAAGATCACTTATAGCAAA
AAGCTATTCTATAAAAACTTTATTGCTAAGAAAAATAAATAAATCTCATT
AAATTTGAAAGGTTGAGCTTCACTGGTATTCTGAACTTTTTAAGAAAATT
GTTGATGGGAAGAAAACTGTTTCACCGAGCATTCTCCAAAAAACTTCCAA
GGAAGATATGATGAACTTTTCATTGGATAAAGTGATGGCTGAATTAAAAC
AATTCTTTCCGATGCTGAGCTCCATTCTAATAACAGTTGCAAAGAAAACG
AAAGCCAGCATTCAAGTTGACAATAGCAATCATTACAAAGTCATCAATAC
AATTTGCATGGCAGCCTCGATTCTTCTTAAAAACCGTTTTGCCAAAATGA
CATCATTGCAGCTTTATGTCTCTCTCATCATCAACCATTCATCATACACA
GTTTGTATTATTTATTTTTGAAAATTATTCTGCTCTGTTCTATTAGTTTT
TTGGCTCTGAAGAGAACGTTTGAAAACTATAAAAACTATTTTACTTCTGC
ATTAATAGATTTCATATATGATCGCAAACAATACCCTCTACAGGATAATC
TTACAATTCTAATTCTCCAATTCTATTTTCTTATGTCTAGTCGTCAATGA
AACGTTTGCAGGCACTTCGACTTGTTGTTTCCACACAATTTCTAAACAAA
GTCATGGATTTGTTTGGAAAAGACCACGACCAGCCTTTGAAGGATGCAAA
GGCATATCTTGAAGATAGACTGAAAACAGAAAATGAGCCAATTGCTGTAC
CGATTCCTGAATTTAACACTTCAATTGCCGGACAACTTCAGGACAAAGTG
ATTCCAAATACCAATGACAGTGATAGATGGAGGAAATACAATCCCATTGA
TGATATCACACCAACAATTTTTTTGAACCATATATTTTTTATTTTGGATT
TAATATGGTAGAAAATGAGTGCAGTAAGGGGTTTCCTAATGGGACTTGCA
ATTTTTTAAACTATTCAATTTTTCGTTCTTAAATAAACAACAGTCTAAAA
AAACTCATTTTCGGATACCCTACTGCTGAACTTCCTTGATTTAAGTTTAA
AGTTTTTTTTAAATGCCAATTTTTTCAGGTCCTAAAAGCAAAGTATTAGA
AAGAGGACCAGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00002527-exon-sc0000020-1575043694:868105..868376 | TCONS_00002527-exon-sc0000020-1575043694:868105..868376 | Clytia hemisphaerica | exon |
| TCONS_00002527-exon-sc0000020-1575043694:865365..865886 | TCONS_00002527-exon-sc0000020-1575043694:865365..865886 | Clytia hemisphaerica | exon |
| TCONS_00002527-exon-sc0000020-1510915933:868105..868376 | TCONS_00002527-exon-sc0000020-1510915933:868105..868376 | Clytia hemisphaerica | exon |
| TCONS_00002527-exon-sc0000020-1510915933:865365..865886 | TCONS_00002527-exon-sc0000020-1510915933:865365..865886 | Clytia hemisphaerica | exon |
| TCONS_00002527-exon-sc0000020-1491911889:868105..868376 | TCONS_00002527-exon-sc0000020-1491911889:868105..868376 | Clytia hemisphaerica | exon |
| TCONS_00002527-exon-sc0000020-1491911889:865365..865886 | TCONS_00002527-exon-sc0000020-1491911889:865365..865886 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000020 | supercontig | sc0000020:865365..868376 - |
Blast
The following BLAST results are available for this feature:
|
