TCONS_00002522 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002522
Unique NameTCONS_00002522
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length810

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002522 ID=TCONS_00002522|Name=TCONS_00002522|organism=Clytia hemisphaerica|type=transcript|length=810bp
AAACAGCGTCATCGTATCGTACCAGTTAAGCAACAAAACAGAAGCATACA
CAAAAATACAAGTCATTCTGGTCAACCGAGAATCGAACGAATCTTTCCAA
TTTTCTACCAAAGCAATTGTACCAATGGCGAAATTTCAATTGAATGATTT
AGAATCTGGTACTCAATACAAGGTCAAATTAGCAAGCATGTCACCGGATA
ATCGAACTAGTGAAATGAAAGAGAAAGACTTTCTTACAGCTGGACCTAAA
CGAGTTAAACAAGCCGTAGTAGACCACCTTACTGATACCACAGCCCAAAT
CAGCTGGCAAGCAAATAAGAATCCAGTGGATTCATATGAGATCAAAATCA
CCAATAACGCTGGTCAATCATCCATTCAGAAAGTCCTTGGCAATATTACC
ACCATTACATTGATGGATTTAAGCCCTGATACAAAGTATATGGTAGAAAT
CTTTGCTGTGAAGAATTCAATAAAAGGAATGGAGTCGGAAACGATAAACT
TCCATACAGAACAACAAGTTCTTGTTACAAAGGaaccaaaaacaaacaca
aCAACCAAATCATCAACAAAGCCTTTCACTGGAGTTACGCCACAGCCAGA
TTgCCCTGATATATGCAAGGAGAAAGGAGTTATGTATGGAAACATTGCTC
ATCCAACAAACCCTAAAAGATTTATACAATGCTCTTTTGGGAAATCATTC
GGTTGTAATAATTGCGCTCCTGGAACATATTTTATTGCTGGTGATGGGAA
AACTACAGGTGGCTACTGCGCATGAACGTACTGATGtaataaaacacccc
tgtctcacag
Run BLAST on NCBI

protein sequence of TCONS_00002522-protein

>TCONS_00002522-protein ID=TCONS_00002522-protein|Name=TCONS_00002522-protein|organism=Clytia hemisphaerica|type=polypeptide|length=257bp
NSVIVSYQLSNKTEAYTKIQVILVNRESNESFQFSTKAIVPMAKFQLNDL
ESGTQYKVKLASMSPDNRTSEMKEKDFLTAGPKRVKQAVVDHLTDTTAQI
SWQANKNPVDSYEIKITNNAGQSSIQKVLGNITTITLMDLSPDTKYMVEI
FAVKNSIKGMESETINFHTEQQVLVTKEPKTNTTTKSSTKPFTGVTPQPD
CPDICKEKGVMYGNIAHPTNPKRFIQCSFGKSFGCNNCAPGTYFIAGDGK
TTGGYCA
Run BLAST on NCBI

transcript from alignment at sc0000020:739302..742498-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002522 ID=TCONS_00002522|Name=TCONS_00002522|organism=Clytia hemisphaerica|type=transcript|length=3197bp|location=Sequence derived from alignment at sc0000020:739302..742498- (Clytia hemisphaerica)
AAACAGCGTCATCGTATCGTACCAGTTAAGCAACAAAACAGAAGCATACA
CAAAAATACAAGTCATTCTGGTCAACCGAGAATCGAACGAATCTTTCCAA
TTTTCTACCAAAGCAATTGTACCAATGGCGAAATTTCAATTGAATGATTT
AGAATCTGGTACTCAATACAAGGTCAAATTAGCAAGCATGTCACCGGATA
ATCGAACTAGTGAAATGAAAGAGAAAGACTTTCTTACAGGTACGTACCAA
AGAACTAACAGACTCGGGGGGGGGTCACTTAGGCATACGGGGACGTGCAG
CATGGCCAGGATCCGATTTTTAGGCTCTCTGACAACGTCTGACAGTGTCG
GCTTTTGGTTATTTTGGACAAATTATAAGGGTGGAAATGAGAAAGATTTT
CAATTTTTCGTGGAAATTGTTTCGCTTTTTGTTCTGACAGGGTCCAACAC
GTCCTCGTCAGCCGTTAAGATCAGTGCCCCCCTCCCCGGGCATATCACGT
TATTTTATGTTTTGTTCCAGTTGAAAATATACCTTTTCCTTTTAATTTCC
CGTCATTGAAGTTTTAAAAATGTGCAGATCATGGGGAGGTCAAGCAGTTA
GTACAAGACATTATGCCTACTAACTGCTTTTTCGCAAGAAGTTAGTAACA
CCACCACCCTTTGTACACTTAGTACTAACTGAATTTGGGGTCAAATTCAC
ATACACCACCCTTGAAAATGACTTTTTGACCATTATGGAGGCAATAGAAC
TGGATAAAACAAAATTTAATATCTTAAATGTTTCAATTTTCCATTTCTTA
TCAATTTACCACCCTTTTTTGCAGTTAGTACCCCTGAGTACTAAGTGATT
TCATCCAATTAACATGGCACACCACGACATATTCAAGCGTCATTATTCGA
ATCTTTTGAATACTCAGATTAAAACAACTTTCTTCAGTTTGAAAAATGTC
TGTGCAGATACTTCATAGAGGTCAATAAACCTGAAATATTGCTATAAAAT
AAGGTATTTAGATTGAAAATGGTGAATCCCACGTATTGGATGAATATTAG
AGTCCTCTTACTATTTTTATATCCTGAACCACAGCTGGACCTAAACGAGT
TAAACAAGCCGTAGTAGACCACCTTACTGATACCACAGCCCAAATCAGCT
GGCAAGCAAATAAGAATCCAGTGGATTCATATGAGATCAAAATCACCAAT
AACGCTGGTCAATCATCCATTCAGAAAGTCCTTGGCAATATTACCACCAT
TACATTGATGGATTTAAGCCCTGATACAAAGTATATGGTAGAAATCTTTG
CTGTGAAGAATTCAATAAAAGGAATGGAGTCGGAAACGATAAACTTCCAT
ACAGAACAACAAGGTAGGTTGAATGTCATCAGAGTGCGCGCACCCAGTTG
GCAATCAACGTTGTTGATAAGTTTTAACGTCCATCTAACATCCCTAACGT
TAGATTAACGTTGAAACAATGAGACAATATTAGACAGCTAGAAAAGAAGT
TACTGCTAGTACACCCCCTGTCCCCTGTCACTGACTGAGTTGGAGCCCTA
CCTACTGAAAAGATTAGTCTACGTACCCGGTAAAAAAAATTTCATCCCTG
TTACAAAAAACGACACTGAATTTTCACCACTGCTAGGAATGTCTATATAA
CTCTTAAATTCCCACTGGATTATTAGCAGTTAAATAAATTTGAATGCTTT
AGCAACTAAATACAAGATTCTTTCCATCGATGGTATTTATCTTCTATTTC
TACAAGCTAAAAACATCGATGGTGTTTATCTTCTATTTCTACAAGCTAAA
AACTTAAAAAAATAATTTTCAAGTTTGTAAGTTAAAAGATCTCTTTGAAA
TATTTTGGAGATTCATTATGGTAAATCACCACATATTTCTCAAAATACTA
TATAGAGCTAAAAAGTAATGCCATATCTTGATAACAACAATAGGCACCGA
AAGATTTAGCACAAAAGGGAAATTCCCTCAAAACTTTAAAACCGCAAGTA
ATTTTTAAGTGCTTTAAAGTACGGTTAGAAAGTGGAGTTTTATTATTAGA
CTTGAGGAGATTAGGATCTCGGGATCCAAAAGCTCAAAATGTTCGAATAT
GGCTGAGAACATAGCCTGAAAGCCACTTAACCCCTCCCAAATCAAGAAAT
CCACTGAAACAAAGTGGAAGTACTGAAATCACAATTCTCGCCCGAGCTTT
AGATTCTAGAAAACGTTAAGTTACCCAAAATTGACAATATATTTCGGCGC
TGACCAGCAAATAGCAGGTAGTAAATAGCAACTACGATCATCAATTATTT
CTTACATCTTTTTTAGTTCTTGTTACAAAGGAACCAAAAACAAACACAAC
AACCAAATCATCAACAAAGCCTTTCACTGGAGTTACGCCACAGCCAGATT
GTAAGTTTTCATCAGTAGAGGATCATCTCTCAAATTTACTCACCAGGCAT
CTATTATGTTTTTTACATTGATTTTTAAGTCCCGAATGTGCTACAGAGGA
TTGGAAACGAAGCCACTTATTTCCCATTCAAATGAGTGACCCACATGTGT
TTTTCACACAAACGCCATATTGAGAGTAAAATCTTTCGTAAATATCGGGT
GTTAACAGAAATAAAAGTACGGGCAATCTACATGATTAAAGCAAGGTCAG
TCTATTCGGAACCACCTGCCAGATAATGTTGTTTCAAAGTTCATCTAGCG
TTAAACATGGACATTGTTTAGACCCCCCGGTTTTCGTGATGGCGTGATTG
GCGTTTTTTTCAAGTTCGTGATTTCGTGATTTAAGATTTTAAAGTGTGTG
ATTGCGTGATCGGAGGAACCAACGTGATCGGGATATAAAGGAAATTTAAC
TCGTGATAACGTGATTTGGGAATTCTTTGCGTGATTGCGTGATTTGAAAG
GTGACTAGGGGCCTAATTGTTAAGGCCTGTTATGCTATTTGAGCTAAGTT
TTTACTTTGAATCTAAATTATCTTTTTATATTTTTGTAGGCCCTGATATA
TGCAAGGAGAAAGGAGTTATGTATGGAAACATTGCTCATCCAACAAACCC
TAAAAGATTTATACAATGCTCTTTTGGGAAATCATTCGGTTGTAATAATT
GCGCTCCTGGAACATATTTTATTGCTGGTGATGGGAAAACTACAGGTGGC
TACTGCGCATGAACGTACTGATGTAATAAAACACCCCTGTCTCACAG

Coding sequence (CDS) from alignment at sc0000020:739302..742498-

>TCONS_00002522 ID=TCONS_00002522|Name=TCONS_00002522|organism=Clytia hemisphaerica|type=CDS|length=3096bp|location=Sequence derived from alignment at sc0000020:739302..742498- (Clytia hemisphaerica)
GCCCTGATATATGCAAGGAGAAAGGAGTTATGTATGGAAACATTGCTCAT
CCAACAAACCCTAAAAGATTTATACAATGCTCTTTTGGGAAATCATTCGG
TTGTAATAATTGCGCTCCTGGAACATATTTTATTGCTGGTGATGGGAAAA
CTACAGGTGGCTACTGCGCATGATTCTTGTTACAAAGGAACCAAAAACAA
ACACAACAACCAAATCATCAACAAAGCCTTTCACTGGAGTTACGCCACAG
CCAGATTCTGGACCTAAACGAGTTAAACAAGCCGTAGTAGACCACCTTAC
TGATACCACAGCCCAAATCAGCTGGCAAGCAAATAAGAATCCAGTGGATT
CATATGAGATCAAAATCACCAATAACGCTGGTCAATCATCCATTCAGAAA
GTCCTTGGCAATATTACCACCATTACATTGATGGATTTAAGCCCTGATAC
AAAGTATATGGTAGAAATCTTTGCTGTGAAGAATTCAATAAAAGGAATGG
AGTCGGAAACGATAAACTTCCATACAGAACAACAAGAACAGCGTCATCGT
ATCGTACCAGTTAAGCAACAAAACAGAAGCATACACAAAAATACAAGTCA
TTCTGGTCAACCGAGAATCGAACGAATCTTTCCAATTTTCTACCAAAGCA
ATTGTACCAATGGCGAAATTTCAATTGAATGATTTAGAATCTGGTACTCA
ATACAAGGTCAAATTAGCAAGCATGTCACCGGATAATCGAACTAGTGAAA
TGAAAGAGAAAGACTTTCTTACAGGCCCTGATATATGCAAGGAGAAAGGA
GTTATGTATGGAAACATTGCTCATCCAACAAACCCTAAAAGATTTATACA
ATGCTCTTTTGGGAAATCATTCGGTTGTAATAATTGCGCTCCTGGAACAT
ATTTTATTGCTGGTGATGGGAAAACTACAGGTGGCTACTGCGCATGATTC
TTGTTACAAAGGAACCAAAAACAAACACAACAACCAAATCATCAACAAAG
CCTTTCACTGGAGTTACGCCACAGCCAGATTCTGGACCTAAACGAGTTAA
ACAAGCCGTAGTAGACCACCTTACTGATACCACAGCCCAAATCAGCTGGC
AAGCAAATAAGAATCCAGTGGATTCATATGAGATCAAAATCACCAATAAC
GCTGGTCAATCATCCATTCAGAAAGTCCTTGGCAATATTACCACCATTAC
ATTGATGGATTTAAGCCCTGATACAAAGTATATGGTAGAAATCTTTGCTG
TGAAGAATTCAATAAAAGGAATGGAGTCGGAAACGATAAACTTCCATACA
GAACAACAAGAACAGCGTCATCGTATCGTACCAGTTAAGCAACAAAACAG
AAGCATACACAAAAATACAAGTCATTCTGGTCAACCGAGAATCGAACGAA
TCTTTCCAATTTTCTACCAAAGCAATTGTACCAATGGCGAAATTTCAATT
GAATGATTTAGAATCTGGTACTCAATACAAGGTCAAATTAGCAAGCATGT
CACCGGATAATCGAACTAGTGAAATGAAAGAGAAAGACTTTCTTACAGGC
CCTGATATATGCAAGGAGAAAGGAGTTATGTATGGAAACATTGCTCATCC
AACAAACCCTAAAAGATTTATACAATGCTCTTTTGGGAAATCATTCGGTT
GTAATAATTGCGCTCCTGGAACATATTTTATTGCTGGTGATGGGAAAACT
ACAGGTGGCTACTGCGCATGATTCTTGTTACAAAGGAACCAAAAACAAAC
ACAACAACCAAATCATCAACAAAGCCTTTCACTGGAGTTACGCCACAGCC
AGATTCTGGACCTAAACGAGTTAAACAAGCCGTAGTAGACCACCTTACTG
ATACCACAGCCCAAATCAGCTGGCAAGCAAATAAGAATCCAGTGGATTCA
TATGAGATCAAAATCACCAATAACGCTGGTCAATCATCCATTCAGAAAGT
CCTTGGCAATATTACCACCATTACATTGATGGATTTAAGCCCTGATACAA
AGTATATGGTAGAAATCTTTGCTGTGAAGAATTCAATAAAAGGAATGGAG
TCGGAAACGATAAACTTCCATACAGAACAACAAGAACAGCGTCATCGTAT
CGTACCAGTTAAGCAACAAAACAGAAGCATACACAAAAATACAAGTCATT
CTGGTCAACCGAGAATCGAACGAATCTTTCCAATTTTCTACCAAAGCAAT
TGTACCAATGGCGAAATTTCAATTGAATGATTTAGAATCTGGTACTCAAT
ACAAGGTCAAATTAGCAAGCATGTCACCGGATAATCGAACTAGTGAAATG
AAAGAGAAAGACTTTCTTACAGGCCCTGATATATGCAAGGAGAAAGGAGT
TATGTATGGAAACATTGCTCATCCAACAAACCCTAAAAGATTTATACAAT
GCTCTTTTGGGAAATCATTCGGTTGTAATAATTGCGCTCCTGGAACATAT
TTTATTGCTGGTGATGGGAAAACTACAGGTGGCTACTGCGCATGATTCTT
GTTACAAAGGAACCAAAAACAAACACAACAACCAAATCATCAACAAAGCC
TTTCACTGGAGTTACGCCACAGCCAGATTCTGGACCTAAACGAGTTAAAC
AAGCCGTAGTAGACCACCTTACTGATACCACAGCCCAAATCAGCTGGCAA
GCAAATAAGAATCCAGTGGATTCATATGAGATCAAAATCACCAATAACGC
TGGTCAATCATCCATTCAGAAAGTCCTTGGCAATATTACCACCATTACAT
TGATGGATTTAAGCCCTGATACAAAGTATATGGTAGAAATCTTTGCTGTG
AAGAATTCAATAAAAGGAATGGAGTCGGAAACGATAAACTTCCATACAGA
ACAACAAGAACAGCGTCATCGTATCGTACCAGTTAAGCAACAAAACAGAA
GCATACACAAAAATACAAGTCATTCTGGTCAACCGAGAATCGAACGAATC
TTTCCAATTTTCTACCAAAGCAATTGTACCAATGGCGAAATTTCAATTGA
ATGATTTAGAATCTGGTACTCAATACAAGGTCAAATTAGCAAGCATGTCA
CCGGATAATCGAACTAGTGAAATGAAAGAGAAAGACTTTCTTACAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001348XLOC_001348Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002522-exon-sc0000020-1575043694:742260..742498TCONS_00002522-exon-sc0000020-1575043694:742260..742498Clytia hemisphaericaexon
TCONS_00002522-exon-sc0000020-1575043694:741136..741414TCONS_00002522-exon-sc0000020-1575043694:741136..741414Clytia hemisphaericaexon
TCONS_00002522-exon-sc0000020-1575043694:740099..740182TCONS_00002522-exon-sc0000020-1575043694:740099..740182Clytia hemisphaericaexon
TCONS_00002522-exon-sc0000020-1575043694:739302..739509TCONS_00002522-exon-sc0000020-1575043694:739302..739509Clytia hemisphaericaexon
TCONS_00002522-exon-sc0000020-1510915933:742260..742498TCONS_00002522-exon-sc0000020-1510915933:742260..742498Clytia hemisphaericaexon
TCONS_00002522-exon-sc0000020-1510915933:741136..741414TCONS_00002522-exon-sc0000020-1510915933:741136..741414Clytia hemisphaericaexon
TCONS_00002522-exon-sc0000020-1510915933:740099..740182TCONS_00002522-exon-sc0000020-1510915933:740099..740182Clytia hemisphaericaexon
TCONS_00002522-exon-sc0000020-1510915933:739302..739509TCONS_00002522-exon-sc0000020-1510915933:739302..739509Clytia hemisphaericaexon
TCONS_00002522-exon-sc0000020-1491911889:742260..742498TCONS_00002522-exon-sc0000020-1491911889:742260..742498Clytia hemisphaericaexon
TCONS_00002522-exon-sc0000020-1491911889:741136..741414TCONS_00002522-exon-sc0000020-1491911889:741136..741414Clytia hemisphaericaexon
TCONS_00002522-exon-sc0000020-1491911889:740099..740182TCONS_00002522-exon-sc0000020-1491911889:740099..740182Clytia hemisphaericaexon
TCONS_00002522-exon-sc0000020-1491911889:739302..739509TCONS_00002522-exon-sc0000020-1491911889:739302..739509Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002522-proteinTCONS_00002522-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000020supercontigsc0000020:739302..742498 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0575647	0	0	0	0	0	0	0	0	0	0	0.588897	0.122315	0.167599	1.07916	0	0	1.06677	0.984973	0	0	0	0	0	0	0.404717	0.17277	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR003961FN3_dom
IPR002557Chitin-bd_dom
IPR013783Ig-like_fold
IPR001699TF_T-box
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0008061chitin binding
GO:0003700transcription factor activity, sequence-specific DNA binding
Vocabulary: Cellular Component
TermDefinition
GO:0005576extracellular region
GO:0005634nucleus
Vocabulary: Biological Process
TermDefinition
GO:0006030chitin metabolic process
GO:0006355regulation of transcription, DNA-templated
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006030 chitin metabolic process
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005576 extracellular region
cellular_component GO:0005634 nucleus
molecular_function GO:0008061 chitin binding
molecular_function GO:0005515 protein binding
molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00002522 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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