TCONS_00002521 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002521
Unique NameTCONS_00002521
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2329

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002521 ID=TCONS_00002521|Name=TCONS_00002521|organism=Clytia hemisphaerica|type=transcript|length=2329bp
CCCAGCATTCCTTGTGATTTAGTCATACTGCAATATATTCTTGCAGAATC
TATCCACACACCTTCGCTTCACACCTTCGATACAATTTAATTATAAAGCT
GGAAGTAAAAAAttcttggtttgccgtcacccgaacctagattttggagg
tgggtcagtcggtcggaaattttttttattctggtcattcatggaatttt
tgtcaatattttgtgatttttgaagaaaaaagattcTCTTCGTCGAAAta
gtaataaaagtttttgggtcGGCAAATCTAGAGAAGAGTAGGTCGGCTgc
tgacggcaaaccaacattgTTTAAGTCCAGCCTAACGGTGCACTATCGAT
AACCAGGTCAGAATACTACACTCTCTCAAATATATAcatttcatcatttt
catcaaaacggTTTCGGCAATCGACCCAATGTGCGTTTCCCATAATACAA
ACAAGataaaaccaaataaaaaccAATCTCAATCACTGATATAAAAGATG
CacccaaaacgaggctaatCAAACCTCCAATTTTCCCTGCAACATGATCC
AGAGTATGTAATTGTTTTTCTTCAATCATCTGATAAGAGTCGATACTGGA
ATATTGGATATCTAACCGGTATCGATTCTGACCACCAGGGCTGTTCGGTG
GATTATCGTAGGACAGTAAACGGGTCATATACTCTGTTTCTTCACACGGG
AATGGACAATTCACACCAGACTGGACTTGTGCGCTTTCTTGTTGAACACA
TTGTAGTACTTCCAGTATGGTACGATTCTGTCGGTAAAGCCGTACGTAGT
CTTCGGGAATGTATTTTTTAAAGTAATCGAAAATATCACCGCATTTTTTA
AACGTGCGTAAGTACGTAGATGATTCGAGGCATGTTCTACGTGTGTATTT
CCCAGGGAAAATATCGTTGAATTTCTCAGAGGTGCACTTTGAAGGGAACG
GCGGCGGTAGACGTTTTATGATGGTTTTCCTGATATTAAATTCGAAGGAT
TTCGACGTCTCCAAAACGAAGCGATTTGTTAAATCGAATTCAACGCCTAT
TTGCGGATCGTGAACGATTGCGACGATGAACGGAGTACGTTTCAATGCCG
TTGTATTGATCTGGAATTCGATATGCGCATGTGCGTACGCATCTGATAAA
TCACCGTTATGATTCAAAGTCACGCACGAGTGATCAAACTGGGCAAGAGA
TTTTAAATAGACATCATTAGTACATGTTTTGCCACCCCATGTATAACAAG
CAAGGACGTGAAAAATACCGTTACTCCATTGTCCAGTTATGTTTAAAATG
TTCGATCGAGGTTTTGGAGGACGTATTTCTTCCATACACGGCTGCCGATA
GTTGTCATATCTTTGACCTTGTTTTTTGTTGCAGTATGAGAAATATTGTT
GAATCATGGATCGTAAATCACATACCGTGATACTTGGGAATGGATTTTCA
ACTTGTAGTGATGTTGTCACTTCAGCGTATATGTGATATTCCAAATAGTT
GGTTACTATGGAATAAGTCAGCCATGTTGAAGCTAAAATGGCACATATGA
CAATGATGGTCCAAAGGCAAGATTCAATCCGTGACTCGGAGGAGATACGA
GCCAACCCATGAACGGTGGAGGAATCAAGATATTCTCTGCGTTTGTTATT
GATTAGTTTTCGTGAGAATCGGAGAGATTTTCGAGGTGTATCGGGTGGGT
TCTNCGTACGTAGTCTTCGGGAATGTATTTTTTAAAGTAATCGAAAATAT
CACCGCATTTTTTAAACGTGCGTAAATACGTAGATGATTCGAGGCATGTT
CTACGTGTGTATTTCCCAGGGAAAATATCGTTGAATTTCTCAGAGGTGCA
CTTTGAAGGGAACGGCGGCGGTAGACGTTTTATGATGGTTTTCCTGATAT
TAAATTCGAAGGATTTCGACGTCTCCAAAACGAAGCGATTTGTTAAATCG
AATTCAACGCCTATTTGCGGATCGTGAACGATTGCGACGATGAACGGAGT
ACGTTTCAATGCCGTTGTATTGATCTGGAATTCGATATGCGCATGTGCGT
ACGCATCTGATAAATCACCGTTATGATTCAAAGTCACGCACGAGTGATCA
AACTGGGCAAGAGATTTTAAATAGACATCATTAGTGCATGTTTTGCCACC
CCATGTATAACAAGCAAGGACGTGAAAAATACCGTTACTCCATTGTCCAG
TTATGTTTAAAACGTTCGATCGAGGTTTTGGAGGACGTATTTCTTCCATA
CACGGTTGCCGATAGTTGTCATATCTTTGGCCTTGTTTTTTGTTGCAGTA
TGAGAAATATTGTTGAATCATGGATCGTA
Run BLAST on NCBI

transcript from alignment at sc0000020:696338..698666-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002521 ID=TCONS_00002521|Name=TCONS_00002521|organism=Clytia hemisphaerica|type=transcript|length=2329bp|location=Sequence derived from alignment at sc0000020:696338..698666- (Clytia hemisphaerica)
CCCAGCATTCCTTGTGATTTAGTCATACTGCAATATATTCTTGCAGAATC
TATCCACACACCTTCGCTTCACACCTTCGATACAATTTAATTATAAAGCT
GGAAGTAAAAAATTCTTGGTTTGCCGTCACCCGAACCTAGATTTTGGAGG
TGGGTCAGTCGGTCGGAAATTTTTTTTATTCTGGTCATTCATGGAATTTT
TGTCAATATTTTGTGATTTTTGAAGAAAAAAGATTCTCTTCGTCGAAATA
GTAATAAAAGTTTTTGGGTCGGCAAATCTAGAGAAGAGTAGGTCGGCTGC
TGACGGCAAACCAACATTGTTTAAGTCCAGCCTAACGGTGCACTATCGAT
AACCAGGTCAGAATACTACACTCTCTCAAATATATACATTTCATCATTTT
CATCAAAACGGTTTCGGCAATCGACCCAATGTGCGTTTCCCATAATACAA
ACAAGATAAAACCAAATAAAAACCAATCTCAATCACTGATATAAAAGATG
CACCCAAAACGAGGCTAATCAAACCTCCAATTTTCCCTGCAACATGATCC
AGAGTATGTAATTGTTTTTCTTCAATCATCTGATAAGAGTCGATACTGGA
ATATTGGATATCTAACCGGTATCGATTCTGACCACCAGGGCTGTTCGGTG
GATTATCGTAGGACAGTAAACGGGTCATATACTCTGTTTCTTCACACGGG
AATGGACAATTCACACCAGACTGGACTTGTGCGCTTTCTTGTTGAACACA
TTGTAGTACTTCCAGTATGGTACGATTCTGTCGGTAAAGCCGTACGTAGT
CTTCGGGAATGTATTTTTTAAAGTAATCGAAAATATCACCGCATTTTTTA
AACGTGCGTAAGTACGTAGATGATTCGAGGCATGTTCTACGTGTGTATTT
CCCAGGGAAAATATCGTTGAATTTCTCAGAGGTGCACTTTGAAGGGAACG
GCGGCGGTAGACGTTTTATGATGGTTTTCCTGATATTAAATTCGAAGGAT
TTCGACGTCTCCAAAACGAAGCGATTTGTTAAATCGAATTCAACGCCTAT
TTGCGGATCGTGAACGATTGCGACGATGAACGGAGTACGTTTCAATGCCG
TTGTATTGATCTGGAATTCGATATGCGCATGTGCGTACGCATCTGATAAA
TCACCGTTATGATTCAAAGTCACGCACGAGTGATCAAACTGGGCAAGAGA
TTTTAAATAGACATCATTAGTACATGTTTTGCCACCCCATGTATAACAAG
CAAGGACGTGAAAAATACCGTTACTCCATTGTCCAGTTATGTTTAAAATG
TTCGATCGAGGTTTTGGAGGACGTATTTCTTCCATACACGGCTGCCGATA
GTTGTCATATCTTTGACCTTGTTTTTTGTTGCAGTATGAGAAATATTGTT
GAATCATGGATCGTAAATCACATACCGTGATACTTGGGAATGGATTTTCA
ACTTGTAGTGATGTTGTCACTTCAGCGTATATGTGATATTCCAAATAGTT
GGTTACTATGGAATAAGTCAGCCATGTTGAAGCTAAAATGGCACATATGA
CAATGATGGTCCAAAGGCAAGATTCAATCCGTGACTCGGAGGAGATACGA
GCCAACCCATGAACGGTGGAGGAATCAAGATATTCTCTGCGTTTGTTATT
GATTAGTTTTCGTGAGAATCGGAGAGATTTTCGAGGTGTATCGGGTGGGT
TCTNCGTACGTAGTCTTCGGGAATGTATTTTTTAAAGTAATCGAAAATAT
CACCGCATTTTTTAAACGTGCGTAAATACGTAGATGATTCGAGGCATGTT
CTACGTGTGTATTTCCCAGGGAAAATATCGTTGAATTTCTCAGAGGTGCA
CTTTGAAGGGAACGGCGGCGGTAGACGTTTTATGATGGTTTTCCTGATAT
TAAATTCGAAGGATTTCGACGTCTCCAAAACGAAGCGATTTGTTAAATCG
AATTCAACGCCTATTTGCGGATCGTGAACGATTGCGACGATGAACGGAGT
ACGTTTCAATGCCGTTGTATTGATCTGGAATTCGATATGCGCATGTGCGT
ACGCATCTGATAAATCACCGTTATGATTCAAAGTCACGCACGAGTGATCA
AACTGGGCAAGAGATTTTAAATAGACATCATTAGTGCATGTTTTGCCACC
CCATGTATAACAAGCAAGGACGTGAAAAATACCGTTACTCCATTGTCCAG
TTATGTTTAAAACGTTCGATCGAGGTTTTGGAGGACGTATTTCTTCCATA
CACGGTTGCCGATAGTTGTCATATCTTTGGCCTTGTTTTTTGTTGCAGTA
TGAGAAATATTGTTGAATCATGGATCGTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001347XLOC_001347Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002521-exon-sc0000020-1575043694:696338..698666TCONS_00002521-exon-sc0000020-1575043694:696338..698666Clytia hemisphaericaexon
TCONS_00002521-exon-sc0000020-1510915933:696338..698666TCONS_00002521-exon-sc0000020-1510915933:696338..698666Clytia hemisphaericaexon
TCONS_00002521-exon-sc0000020-1491911889:696338..698666TCONS_00002521-exon-sc0000020-1491911889:696338..698666Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000020supercontigsc0000020:696338..698666 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.0370753	0.0884357	0.139766	1.18035	1.26289	0.10541	0.131003	0.438842	0.434826	0.0436139	0	0	0.0342011	0	0.0433766	0	0	0.0583996	0.0887103	0	0.205077	0.272864	0.754053	0.0899206	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00002521 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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