TCONS_00002494 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002494
Unique NameTCONS_00002494
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1877

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002494 ID=TCONS_00002494|Name=TCONS_00002494|organism=Clytia hemisphaerica|type=transcript|length=1877bp
CTATGAGATAGAAATACCTAGAGACGTTTTGAGAGTTCTATATAAATTGA
GTGATGCTATAGTTAACAGGGAGGACGATGGGTATGTCAGTAGAAAATAA
GACATGGACCATCAAcgatttcatcgaatatttacCGTTTTACAACGCTT
TCAccatcaaaattttgtgtttgaTAAATGTTCCAACCTTTGTGGCTGGT
TTCATCTTATACGTCAATGTTTTGATCGCTCCTGAATTACAATGCGAGTG
GAAGTTAACAACCTTTGAAATATCTCTCATATCTATTGCTTTTTATATTG
GAGAAGGTTGCGGATCGTTTTACTGGGGTCGAACGGCTGATATTTATGGT
CGTAAAGTGATACTCATTGTAGTCACAGCATGTATGATCTATTTTGCTTT
GCTGTCATCTGTTAGCGATTCATTTGCCTCACACATGATGATGCGATTCT
TCGTAGGAGCTGGTTATAACGGTTGTTTTATAATGACCGCAGTTTATTCC
ACTGAATTCACCAAGAAAGCTGATCATTGTAAAGCTATACTGTTCGTGag
tattgtttttattgttggTAATCTTGCAGCTATCGGAGTATCCTATTTTA
CAATGAATTCTTACGGATGGGGAAACTTTATTCTTTGGTCAATGCTACCG
TGTCTTTTGCTAGTGTTTTTAATGGTGCTACTACCCGAGTCCATTCGATT
CTTGACTGTGAATGGAGAAAACAATCAAGTGTTGGAAATGTTAAATGACA
TTGCAGCTACTAACAACATTTCATGGCCTGAGAATATCCAATTTCAAGAA
ATATCGAAAAGTAAGAATATAATCAACAATCAAAGCCCTGGCTACGTTGA
AGTCATGACAAAACATTGGAAGAAACTGTTGGGCTTATCAATGTATGGGA
TTCCCTTATTTTTAAGTTACTACGGTATTCCCTTCTTTATTGATTACAAA
CTTCAACAGCAGAGCTCTTGTCAATTCAATAGAACACAGACAATTGTTCA
ATGTGCTCCTTTGAGTGATTCTCAAATTGTACGTTCCTTTCTAGTCAACC
TTGGAATGTTACCAGGAACTATTTGTGGttatattttagctgaaaaattc
gGTCGAAAAATTTTGCTTGGGTTTACAATGATACTAATGAGTATTTGTTA
TTTCATTCAATTGTTTTGTGTACNACTTAGGTTTACAATGACACTAATGA
GTATTTGTTATTTCATTCAATTGTTTTGTGTACCTTCGATTATAACATAC
ATATTATTGTTTTTGGCGTCTGGGTTTGGGATGAGTTCAACTGTTTTCAT
TATGCTTTTCTCATCTGAATTGTTTCCAACAAATATCAGAAGTACTGCAT
CTGGCATGGCAGCAACCCTATGGAAAATCTTCTCTATTATTTCACCACTT
TTGTTCCAGCATTTGATTTATACAAACTGGACtcttgttattgttttgat
ggGGATGTCGAGTCTGATTGGTATTGTTGGATTGTGCATCCTTCCTGAAA
CACTTGGTCAAAATTTAAAGGATTACTAAATTCATTTTATTAGACAATGA
CGGCATGAGACTTTTTGGGTTATTTTTAATTAACTTGTTGAATGAAAATA
AGTAGACATGCAGTTATTAACACAAACTTAAATATTTTGTGTTAGAGGCC
ACTCACAAATCGATGTTTCCCATAGTTCTAAGTATTAGACTTAGCGTCat
tttgacgttagtcgtgggaagaatcgatatgtgagtgccCCCTTAATTAA
AATCTCTAATGAAAACTAGCCGtgaaaagcaaacaaacaaatCGTGTTAA
TTTACGTGTTATCAAGGCCATTAATTAGACGCCTAATTATTTTCGTACAC
TAAGGTATCGGTTGTAGGAAATTTGCG
Run BLAST on NCBI

transcript from alignment at sc0000020:248862..250738-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002494 ID=TCONS_00002494|Name=TCONS_00002494|organism=Clytia hemisphaerica|type=transcript|length=1877bp|location=Sequence derived from alignment at sc0000020:248862..250738- (Clytia hemisphaerica)
CTATGAGATAGAAATACCTAGAGACGTTTTGAGAGTTCTATATAAATTGA
GTGATGCTATAGTTAACAGGGAGGACGATGGGTATGTCAGTAGAAAATAA
GACATGGACCATCAACGATTTCATCGAATATTTACCGTTTTACAACGCTT
TCACCATCAAAATTTTGTGTTTGATAAATGTTCCAACCTTTGTGGCTGGT
TTCATCTTATACGTCAATGTTTTGATCGCTCCTGAATTACAATGCGAGTG
GAAGTTAACAACCTTTGAAATATCTCTCATATCTATTGCTTTTTATATTG
GAGAAGGTTGCGGATCGTTTTACTGGGGTCGAACGGCTGATATTTATGGT
CGTAAAGTGATACTCATTGTAGTCACAGCATGTATGATCTATTTTGCTTT
GCTGTCATCTGTTAGCGATTCATTTGCCTCACACATGATGATGCGATTCT
TCGTAGGAGCTGGTTATAACGGTTGTTTTATAATGACCGCAGTTTATTCC
ACTGAATTCACCAAGAAAGCTGATCATTGTAAAGCTATACTGTTCGTGAG
TATTGTTTTTATTGTTGGTAATCTTGCAGCTATCGGAGTATCCTATTTTA
CAATGAATTCTTACGGATGGGGAAACTTTATTCTTTGGTCAATGCTACCG
TGTCTTTTGCTAGTGTTTTTAATGGTGCTACTACCCGAGTCCATTCGATT
CTTGACTGTGAATGGAGAAAACAATCAAGTGTTGGAAATGTTAAATGACA
TTGCAGCTACTAACAACATTTCATGGCCTGAGAATATCCAATTTCAAGAA
ATATCGAAAAGTAAGAATATAATCAACAATCAAAGCCCTGGCTACGTTGA
AGTCATGACAAAACATTGGAAGAAACTGTTGGGCTTATCAATGTATGGGA
TTCCCTTATTTTTAAGTTACTACGGTATTCCCTTCTTTATTGATTACAAA
CTTCAACAGCAGAGCTCTTGTCAATTCAATAGAACACAGACAATTGTTCA
ATGTGCTCCTTTGAGTGATTCTCAAATTGTACGTTCCTTTCTAGTCAACC
TTGGAATGTTACCAGGAACTATTTGTGGTTATATTTTAGCTGAAAAATTC
GGTCGAAAAATTTTGCTTGGGTTTACAATGATACTAATGAGTATTTGTTA
TTTCATTCAATTGTTTTGTGTACNACTTAGGTTTACAATGACACTAATGA
GTATTTGTTATTTCATTCAATTGTTTTGTGTACCTTCGATTATAACATAC
ATATTATTGTTTTTGGCGTCTGGGTTTGGGATGAGTTCAACTGTTTTCAT
TATGCTTTTCTCATCTGAATTGTTTCCAACAAATATCAGAAGTACTGCAT
CTGGCATGGCAGCAACCCTATGGAAAATCTTCTCTATTATTTCACCACTT
TTGTTCCAGCATTTGATTTATACAAACTGGACTCTTGTTATTGTTTTGAT
GGGGATGTCGAGTCTGATTGGTATTGTTGGATTGTGCATCCTTCCTGAAA
CACTTGGTCAAAATTTAAAGGATTACTAAATTCATTTTATTAGACAATGA
CGGCATGAGACTTTTTGGGTTATTTTTAATTAACTTGTTGAATGAAAATA
AGTAGACATGCAGTTATTAACACAAACTTAAATATTTTGTGTTAGAGGCC
ACTCACAAATCGATGTTTCCCATAGTTCTAAGTATTAGACTTAGCGTCAT
TTTGACGTTAGTCGTGGGAAGAATCGATATGTGAGTGCCCCCTTAATTAA
AATCTCTAATGAAAACTAGCCGTGAAAAGCAAACAAACAAATCGTGTTAA
TTTACGTGTTATCAAGGCCATTAATTAGACGCCTAATTATTTTCGTACAC
TAAGGTATCGGTTGTAGGAAATTTGCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001334XLOC_001334Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002494-exon-sc0000020-1575043694:248862..250738TCONS_00002494-exon-sc0000020-1575043694:248862..250738Clytia hemisphaericaexon
TCONS_00002494-exon-sc0000020-1510915933:248862..250738TCONS_00002494-exon-sc0000020-1510915933:248862..250738Clytia hemisphaericaexon
TCONS_00002494-exon-sc0000020-1491911889:248862..250738TCONS_00002494-exon-sc0000020-1491911889:248862..250738Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000020supercontigsc0000020:248862..250738 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0212696	0.080208	0	0.023561	0.0880026	0	0	0.0259906	0.0179235	0.0447986	0.021549	0.0141655	0.0711348	0.0734526	0.0241552	0.0388833	0.78646	0.620677	0	0	0.515452	0.563703	3.56055	3.6868	1.92807	3.04748	0.0874947	0.0933767	0	0.0481049
Blast
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BLAST of TCONS_00002494 vs. Swiss-Prot (Human)
Match: SVOP (Synaptic vesicle 2-related protein OS=Homo sapiens GN=SVOP PE=2 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 1.742e-32
Identity = 118/487 (24.23%), Postives = 216/487 (44.35%), Query Frame = 3 
Query:   96 NKTWTINDFIEYLPFYNAFTIKILCLINVPTFVAGFILYVNVLIAPELQCEWKLTTFEISLISIAFYIGEGCGSFYWGRTADIYGRKVILIVVTACMIYFALLSSVSDSFASHMMMRFFVGAGYNGCFIMTAVYSTEFTKKADHCKAILFVSIVFIVGNLAAIGVSYFTMNSYGWGNFILWSXXXXXXXXXXXXXXXESIRFLTVNGENNQVLEMLNDIAATNNISWPENIQFQEISKSKNIINNQSP--GYVEVMTKH--WKKLLGLSMYGIPLFLSYYGIPFFIDYKLQQQSSCQFNRTQTIVQ------CAPLSDSQIVRSFLVNLGMLPGTICGYILAEKFGRKILLGFTMILMSICYFIQLFCVXLRFTMTLMSICYFIQLFCVPSIITYILLFLASGFGMSSTVFIMLFSSELFPTNIRSTASGMAATLWKIFSIISPLLFQHLIYTNWTLVIVLMGMSSLIGIVGLCILP-ETLGQNLKD 1523
            + T+ + D +E + F   F  K+  L  +        + +  ++AP+L CEW+L +++++L++   ++G    S  WG  +D YGRK  L +     +Y+ +LS+ +  ++  +++R  VG G  G      +Y+ EF       K IL + + + +G +  + ++ F M S GW   ++ S +P LL   L   LPES R+  ++G   + +  L  IA  N    P           K II+ Q       ++ T H  W  LL   ++    F SYYG+        Q    C  +  +  V+      C  LS+   +      L   PG +    + ++ GRK         M++C+ I  FC  L F              CV   +  +LLF+A  F         +++ E++PT  R+   G  + + ++ ++I+P + Q ++ ++  L + +     L+  +  C LP ET G+ L++
Sbjct:   65 DDTFMVEDAVEAIGF-GKFQWKLSVLTGLAWMADAMEMMILSILAPQLHCEWRLPSWQVALLTSVVFVGMMSSSTLWGNISDQYGRKTGLKISVLWTLYYGILSAFAPVYSWILVLRGLVGFGIGGVPQSVTLYA-EFLPMKARAKCILLIEVFWAIGTVFEVVLAVFVMPSLGWRWLLILSAVPLLLFAVLCFWLPESARYDVLSGNQEKAIATLKRIATENGAPMP---------LGKLIISRQEDRGKMRDLFTPHFRWTTLLLWFIWFSNAF-SYYGLVLLTTELFQAGDVCGISSRKKAVEAKCSLACEYLSEEDYMDLLWTTLSEFPGVLVTLWIIDRLGRK-------KTMALCFVIFSFCSLLLF-------------ICVGRNVLTLLLFIARAFISGGFQAAYVYTPEVYPTATRALGLGTCSGMARVGALITPFIAQVMLESSVYLTLAVYSGCCLLAALASCFLPIETKGRGLQE 519
The following BLAST results are available for this feature:
BLAST of TCONS_00002494 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SVOP1.742e-3224.23Synaptic vesicle 2-related protein OS=Homo sapiens... [more]
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