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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00002481 ID=TCONS_00002481|Name=TCONS_00002481|organism=Clytia hemisphaerica|type=transcript|length=1096bp
TCAAGAAGTCAGGGTGCATAAACATTCCAATAGACGCGTGCTACACACAA
TCGAAATGGAAAATGGGGGATTATGCGCTGATCCTGGAGATGTTCCACGG
AACGTGCGGCAGGTTCGTCATGTCAAATCCAAATTACAGGGAAAGACGAA
AGATCCATTGGCAGATGTTTTACATCTACAAGAAGAACTTGGAGACTTTG
TTCAACCTGTATTAATTGAGAACAATTCGCCGACGGTTATTCTGTTCAAT
aaggaacaagttaagaacattgctAAATTCTGTTCACCACCGTTAGATTA
TCAGGTGTCTGTCCTTTCCTGTGATATGACATTTAACATCGGAGATTTCT
GGGTGGTCATAACTACTTATTCCAATCTGATGGTCTTTTCAAAGAAGTAC
GGCCGACCGGTTACTGGAATTGGTCCAATCATGATTTGTAAGACAAAGTC
AACCAAACAGTATTCGTTGTTATTTCACGCAATCACAACTGAGGATCCTG
ATTTAAAGGTGTCTTTGAGAGCGTTTGGTCAAGATGGTGAGAAAGCTATA
TTTGAGGCCCACAAACTGGAATTCCCTTTTGCGATTGGCTTCATATGCTC
AATTCACATCCGTTCAACCTTGCATCTTAGCGAATCGTTTCTCCAGGTCT
TCGTAGCTGATGTCTTTGGCTCGACTCATCAAGAAGGGTTGTACCATGCA
TGTACACGCACTGAATTTGACGAAAATCTGGCTCGGATCAAAAATAGGTG
GAATGAGCTGGAGACGAAAGAGAGGAAGGAAAACAATATGCCAGAACAGC
CTAAATTTTTCActtatttcaagaaaaataaggCTGAAACTGTTTACCAC
TACTGTCGGCAAATGGTAGTTATAGAAGCTAACATCTATCAGCACAATCG
ATTTTCGACTAACGCAACGGAGTCGATAAACAAAGCAATAAAAGTTTGGC
AAGAGAACCACAAGGATGACATGCCTGGATTCATTGTCTCCTTGCAACAA
TTTGTCCAGAGCCAGCTTAACGAAATGAAGAAACCGTTGCTTAACAAGTC
GTCTGACACCTTAATGGTCAACCCTAATTATCGGGAGTATATTGTT Run BLAST on NCBI protein sequence of TCONS_00002481-protein >TCONS_00002481-protein ID=TCONS_00002481-protein|Name=TCONS_00002481-protein|organism=Clytia hemisphaerica|type=polypeptide|length=365bp
QEVRVHKHSNRRVLHTIEMENGGLCADPGDVPRNVRQVRHVKSKLQGKTK
DPLADVLHLQEELGDFVQPVLIENNSPTVILFNKEQVKNIAKFCSPPLDY
QVSVLSCDMTFNIGDFWVVITTYSNLMVFSKKYGRPVTGIGPIMICKTKS
TKQYSLLFHAITTEDPDLKVSLRAFGQDGEKAIFEAHKLEFPFAIGFICS
IHIRSTLHLSESFLQVFVADVFGSTHQEGLYHACTRTEFDENLARIKNRW
NELETKERKENNMPEQPKFFTYFKKNKAETVYHYCRQMVVIEANIYQHNR
FSTNATESINKAIKVWQENHKDDMPGFIVSLQQFVQSQLNEMKKPLLNKS
SDTLMVNPNYREYIV Run BLAST on NCBI transcript from alignment at sc0000020:1051568..1052992+ Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00002481 ID=TCONS_00002481|Name=TCONS_00002481|organism=Clytia hemisphaerica|type=transcript|length=1425bp|location=Sequence derived from alignment at sc0000020:1051568..1052992+ (Clytia hemisphaerica)
TCAAGAAGTCAGGGTGCATAAACATTCCAATAGACGCGTGCTACACACAA
TCGAAATGGAAAATGGGGGATTATGCGCTGATCCTGGAGATGTTCCACGG
AACGTGCGGCAGGTTCGTCATGTCAAATCCAAATTACAGGGAAAGACGAA
AGATCCATTGGCAGATGTTTTACATCTACAAGAAGAACTTGGAGACTTTG
TTCAACCTGTAAGACTTTACTTTTTCTCTCATTTCAATTGAATTACAAGA
AACTGTCAGCGTTTGGAACGATGAAgcattgtgcttataaaatcaAGTTT
AGTCAAGTGGGATACCTGAGAGAATCTTTGCGATTTCAATATCTTTGGGC
ACACTTAAAATTCTAACTACTAtatctttaaaaacaaaagaatctatTGA
CTATTCTGGGGACTTTTTATGGGACACCCTGTTAAGAAGCTAAACACAGC
TCCTAATACTTCTGCTACTCTGTACAAATAGTACTAATAGTACAAATGCT
GGTCTAGAgtagatatttttctttcttactTTCATAGGTATTAATTGAGA
ACAATTCGCCGACGGTTATTCTGTTCAATaaggaacaagttaagaacatt
gctAAATTCTGTTCACCACCGTTAGATTATCAGGTGTCTGTCCTTTCCTG
TGATATGACATTTAACATCGGAGATTTCTGGGTGGTCATAACTACTTATT
CCAATCTGATGGTCTTTTCAAAGAAGTACGGCCGACCGGTTACTGGAATT
GGTCCAATCATGATTTGTAAGACAAAGTCAACCAAACAGTATTCGTTGTT
ATTTCACGCAATCACAACTGAGGATCCTGATTTAAAGGTGTCTTTGAGAG
CGTTTGGTCAAGATGGTGAGAAAGCTATATTTGAGGCCCACAAACTGGAA
TTCCCTTTTGCGATTGGCTTCATATGCTCAATTCACATCCGTTCAACCTT
GCATCTTAGCGAATCGTTTCTCCAGGTCTTCGTAGCTGATGTCTTTGGCT
CGACTCATCAAGAAGGGTTGTACCATGCATGTACACGCACTGAATTTGAC
GAAAATCTGGCTCGGATCAAAAATAGGTGGAATGAGCTGGAGACGAAAGA
GAGGAAGGAAAACAATATGCCAGAACAGCCTAAATTTTTCActtatttca
agaaaaataaggCTGAAACTGTTTACCACTACTGTCGGCAAATGGTAGTT
ATAGAAGCTAACATCTATCAGCACAATCGATTTTCGACTAACGCAACGGA
GTCGATAAACAAAGCAATAAAAGTTTGGCAAGAGAACCACAAGGATGACA
TGCCTGGATTCATTGTCTCCTTGCAACAATTTGTCCAGAGCCAGCTTAAC
GAAATGAAGAAACCGTTGCTTAACAAGTCGTCTGACACCTTAATGGTCAA
CCCTAATTATCGGGAGTATATTGTT Coding sequence (CDS) from alignment at sc0000020:1051568..1052992+ >TCONS_00002481 ID=TCONS_00002481|Name=TCONS_00002481|organism=Clytia hemisphaerica|type=CDS|length=2190bp|location=Sequence derived from alignment at sc0000020:1051568..1052992+ (Clytia hemisphaerica)
CAAGAAGTCAGGGTGCATAAACATTCCAATAGACGCGTGCTACACACAAT
CGAAATGGAAAATGGGGGATTATGCGCTGATCCTGGAGATGTTCCACGGA
ACGTGCGGCAGGTTCGTCATGTCAAATCCAAATTACAGGGAAAGACGAAA
GATCCATTGGCAGATGTTTTACATCTACAAGAAGAACTTGGAGACTTTGT
TCAACCTGTATTAATTGAGAACAATTCGCCGACGGTTATTCTGTTCAATa
aggaacaagttaagaacattgctAAATTCTGTTCACCACCGTTAGATTAT
CAGGTGTCTGTCCTTTCCTGTGATATGACATTTAACATCGGAGATTTCTG
GGTGGTCATAACTACTTATTCCAATCTGATGGTCTTTTCAAAGAAGTACG
GCCGACCGGTTACTGGAATTGGTCCAATCATGATTTGTAAGACAAAGTCA
ACCAAACAGTATTCGTTGTTATTTCACGCAATCACAACTGAGGATCCTGA
TTTAAAGGTGTCTTTGAGAGCGTTTGGTCAAGATGGTGAGAAAGCTATAT
TTGAGGCCCACAAACTGGAATTCCCTTTTGCGATTGGCTTCATATGCTCA
ATTCACATCCGTTCAACCTTGCATCTTAGCGAATCGTTTCTCCAGGTCTT
CGTAGCTGATGTCTTTGGCTCGACTCATCAAGAAGGGTTGTACCATGCAT
GTACACGCACTGAATTTGACGAAAATCTGGCTCGGATCAAAAATAGGTGG
AATGAGCTGGAGACGAAAGAGAGGAAGGAAAACAATATGCCAGAACAGCC
TAAATTTTTCActtatttcaagaaaaataaggCTGAAACTGTTTACCACT
ACTGTCGGCAAATGGTAGTTATAGAAGCTAACATCTATCAGCACAATCGA
TTTTCGACTAACGCAACGGAGTCGATAAACAAAGCAATAAAAGTTTGGCA
AGAGAACCACAAGGATGACATGCCTGGATTCATTGTCTCCTTGCAACAAT
TTGTCCAGAGCCAGCTTAACGAAATGAAGAAACCGTTGCTTAACAAGTCG
TCTGACACCTTAATGGTCAACCCTAATTATCGGGAGTATATTGTTCAAGA
AGTCAGGGTGCATAAACATTCCAATAGACGCGTGCTACACACAATCGAAA
TGGAAAATGGGGGATTATGCGCTGATCCTGGAGATGTTCCACGGAACGTG
CGGCAGGTTCGTCATGTCAAATCCAAATTACAGGGAAAGACGAAAGATCC
ATTGGCAGATGTTTTACATCTACAAGAAGAACTTGGAGACTTTGTTCAAC
CTGTATTAATTGAGAACAATTCGCCGACGGTTATTCTGTTCAATaaggaa
caagttaagaacattgctAAATTCTGTTCACCACCGTTAGATTATCAGGT
GTCTGTCCTTTCCTGTGATATGACATTTAACATCGGAGATTTCTGGGTGG
TCATAACTACTTATTCCAATCTGATGGTCTTTTCAAAGAAGTACGGCCGA
CCGGTTACTGGAATTGGTCCAATCATGATTTGTAAGACAAAGTCAACCAA
ACAGTATTCGTTGTTATTTCACGCAATCACAACTGAGGATCCTGATTTAA
AGGTGTCTTTGAGAGCGTTTGGTCAAGATGGTGAGAAAGCTATATTTGAG
GCCCACAAACTGGAATTCCCTTTTGCGATTGGCTTCATATGCTCAATTCA
CATCCGTTCAACCTTGCATCTTAGCGAATCGTTTCTCCAGGTCTTCGTAG
CTGATGTCTTTGGCTCGACTCATCAAGAAGGGTTGTACCATGCATGTACA
CGCACTGAATTTGACGAAAATCTGGCTCGGATCAAAAATAGGTGGAATGA
GCTGGAGACGAAAGAGAGGAAGGAAAACAATATGCCAGAACAGCCTAAAT
TTTTCActtatttcaagaaaaataaggCTGAAACTGTTTACCACTACTGT
CGGCAAATGGTAGTTATAGAAGCTAACATCTATCAGCACAATCGATTTTC
GACTAACGCAACGGAGTCGATAAACAAAGCAATAAAAGTTTGGCAAGAGA
ACCACAAGGATGACATGCCTGGATTCATTGTCTCCTTGCAACAATTTGTC
CAGAGCCAGCTTAACGAAATGAAGAAACCGTTGCTTAACAAGTCGTCTGA
CACCTTAATGGTCAACCCTAATTATCGGGAGTATATTGTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00002481-exon-sc0000020-1491911889:1051568..1051775 | TCONS_00002481-exon-sc0000020-1491911889:1051568..1051775 | Clytia hemisphaerica | exon |
| TCONS_00002481-exon-sc0000020-1510915933:1051568..1051775 | TCONS_00002481-exon-sc0000020-1510915933:1051568..1051775 | Clytia hemisphaerica | exon |
| TCONS_00002481-exon-sc0000020-1575043694:1051568..1051775 | TCONS_00002481-exon-sc0000020-1575043694:1051568..1051775 | Clytia hemisphaerica | exon |
| TCONS_00002481-exon-sc0000020-1491911889:1052105..1052992 | TCONS_00002481-exon-sc0000020-1491911889:1052105..1052992 | Clytia hemisphaerica | exon |
| TCONS_00002481-exon-sc0000020-1510915933:1052105..1052992 | TCONS_00002481-exon-sc0000020-1510915933:1052105..1052992 | Clytia hemisphaerica | exon |
| TCONS_00002481-exon-sc0000020-1575043694:1052105..1052992 | TCONS_00002481-exon-sc0000020-1575043694:1052105..1052992 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000020 | supercontig | sc0000020:1051568..1052992 + |
Blast
The following BLAST results are available for this feature:
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