TCONS_00002462 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002462
Unique NameTCONS_00002462
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length990

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002462 ID=TCONS_00002462|Name=TCONS_00002462|organism=Clytia hemisphaerica|type=transcript|length=990bp
ATCGAAGATGGCGGGTACAACTTAGTTCAGGATCTTAACATACGTCAGTA
ATATATATCTATATGTTGCCGAGCTCATTATTGGCAATGGTGATCCAAGA
atatgctgatgtcagcaattttaaaagattttctccgTGTTCATTGACAa
tctcaaaatgtttttctttgttaGCATCCAGGTAGTCAAGGCGACATAAA
TCTTGGTGTAAATAAGACATACCGTTAGTAACGGAAttcactgaagtgat
taacatgcTGGAGACTGTCACAATTGAATGgatattttcaatgaaaacat
cTGCTGTCGAGTTTGCTTCAGTGATTTTGTTCTGTCTCTCTTTTTCCAGA
ACAAGGTTCTCATAAGATGATGAATTTTGTCTCGATGATTGATGACATCG
ACGACTGAGCAAGCGAGGCAACCATAATAAGACGCACCTACATGAAACCT
TTGTTCCCTCATTGCGGCGAGTTTTCAGATTCGAATTTTGCTCAGCTAAG
CGAGATTCCTGTTCACGTGTCTCTGCATTCTTTTTCCCAGCCTCTTCGGC
TAATTTTCTTAATCGGTTATAAACAGTTTCCAAGTTGTGAACGATCTTTT
CCCCATCACTATAAAAATCTTCTGAAACAGTTTGTAGTTGatattcattt
ttacaccaatATTCAAAATCAACTTGATACACACCGAAGAagtcttgaaa
tatttcaatcaatGATGTCAACTCTTTAAAACAACCAATGAAATCTCTTA
AAGTGTTTTTAGAATCTGCTTGAAAAATCACCAAGTAATTCTCgtgtttt
tcatcttcattgttaaaatcgtttgttttcaaataaCGTACAGCCTGTGT
ATAACCGTTTAGATTCTGCTTTAAACCTTCATACGATTTTACGAGATCTT
GTAATGTCTCTGATAATAATTCTTCTGGAGATCTTTGTAAACTTTCCATA
CTTTACTGATAACGTACGACTTTTTTTGCGTTCTAAACAC
Run BLAST on NCBI

transcript from alignment at sc0000020:793064..794369+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002462 ID=TCONS_00002462|Name=TCONS_00002462|organism=Clytia hemisphaerica|type=transcript|length=1306bp|location=Sequence derived from alignment at sc0000020:793064..794369+ (Clytia hemisphaerica)
ATCGAAGATGGCGGGTACAACTTAGTTCAGGATCTTAACATACGTCAGTA ATATATATCTATATGTTGCCGAGCTCATTATTGGCAATGGTGATCCAAGA atatgctgatgtcagcaattttaaaagattttctccgTGTTCATTGACAa tctcaaaatgtttttctttgttaGCATCCAGGTAGTCAAGGCGACATAAA TCTTGGTGTAAATAAGACATACCGTTAGTAACGGAAttcactgaagtgat taacatgcTGGAGACTGTCACAATTGAATGgatattttcaatgaaaacat cTGCTGTCGAGTTTGCTTCAGTGATTTTGTTCTGTCTCTCTTTTTCCAGA ACAAGGTTCTCATAAGATGATGAATTTTGTCTCGATGATTGATGACATCG ACGACTGAGCAAGCGAGGCAACCATAATAAGACGCACCTACATGAAACCT TTGTTCCCTCATTGCGGCGAGTTTTCAGATTCGAATTTTGCTCAGCTAAG CGAGATTCCTGTTCACGTGTCTCTGCATTCTTTTTCCCAGCCTCTTCGGC TAATTTTCTTAATCGGTTATAAACAGTTTCCAAGTTGTGAACGATCTTTT CCCCATCACTATAAAAATCTTCTGAAACAGTTTGTAGTTGatattcattt ttacaccaatATTCAAAATCAACTTGATACACACCGAAGAagtcttgaaa tatttcaatcaatGATGTCAACTCTTTAAAACAACCAATGAAATCTCTTA AAGTGTTTTTAGAATCTGCTTGAAAAATCACCAAGTAATTCTCgtgtttt tcatcttcattgttaaaatcgtttgttttcaaataaCGTACAGCCTGTGT ATAACCGTTTAGATTCTGCTTTAAACCTTCATACGATTTTACGAGATCTT GTAATGTCTCTGATAATAATTCTTCTGGAGATCTTTGTAAACTTTCCATA TCTGTACGATAAAAAAACAACGTAAATTATCAACGTAAGTTAGAACCCGG TACCGGTAGGCTTCTCGCTCTCCTCTCTCTTGATCACACAATCCTACTCT GAGATGAAAAAAATGCTAGgaacttgaaatatttttttctttttttttaa caattttagtTCATACCTCTTTTCAAAAACTATTTATCGTCAAATCTCTA AAAAAAGCTTCTCTCCtcgattaaaagaaaaatgtatgTTATGAATGAAT TATCAcagtaaaatcttaaaatatcaaaaataaaaatctaatcGTCAGAA TTTTTATCATTACATACTTTACTGATAACGTACGACTTTTTTTGCGTTCT AAACAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001318XLOC_001318Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002462-exon-sc0000020-1491911889:793064..794010TCONS_00002462-exon-sc0000020-1491911889:793064..794010Clytia hemisphaericaexon
TCONS_00002462-exon-sc0000020-1510915933:793064..794010TCONS_00002462-exon-sc0000020-1510915933:793064..794010Clytia hemisphaericaexon
TCONS_00002462-exon-sc0000020-1575043694:793064..794010TCONS_00002462-exon-sc0000020-1575043694:793064..794010Clytia hemisphaericaexon
TCONS_00002462-exon-sc0000020-1491911889:794327..794369TCONS_00002462-exon-sc0000020-1491911889:794327..794369Clytia hemisphaericaexon
TCONS_00002462-exon-sc0000020-1510915933:794327..794369TCONS_00002462-exon-sc0000020-1510915933:794327..794369Clytia hemisphaericaexon
TCONS_00002462-exon-sc0000020-1575043694:794327..794369TCONS_00002462-exon-sc0000020-1575043694:794327..794369Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000020supercontigsc0000020:793064..794369 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0.0442976 0 0.0503198 0.00108024 0.00646813 14.5672 0 0 5.84227 5.5634e-09 0 5.98186 3.85911 2.08424e-08 0.706215 2.42118 1.20086 0.795949 5.35627 0.170027 0.060165 1.11102e-06 2.04183e-06 7.65719 1.05418 0.0622881 0.132951 0 0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00002462 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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