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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00002459 ID=TCONS_00002459|Name=TCONS_00002459|organism=Clytia hemisphaerica|type=transcript|length=4293bpRun BLAST on NCBI protein sequence of TCONS_00002459-protein >TCONS_00002459-protein ID=TCONS_00002459-protein|Name=TCONS_00002459-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1106bp RAVVEVTNTETGQAEPVSNRPINTPVPFTGLVSGTTYSVRAKSLTPDGRERun BLAST on NCBI transcript from alignment at sc0000020:725090..737645+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00002459 ID=TCONS_00002459|Name=TCONS_00002459|organism=Clytia hemisphaerica|type=transcript|length=12556bp|location=Sequence derived from alignment at sc0000020:725090..737645+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000020:725090..737645+ >TCONS_00002459 ID=TCONS_00002459|Name=TCONS_00002459|organism=Clytia hemisphaerica|type=CDS|length=49815bp|location=Sequence derived from alignment at sc0000020:725090..737645+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00002459 vs. Swiss-Prot (Human)
Match: TENA (Tenascin OS=Homo sapiens GN=TNC PE=1 SV=3) HSP 1 Score: 116.316 bits (290), Expect = 8.619e-26 Identity = 132/527 (25.05%), Postives = 227/527 (43.07%), Query Frame = 1
Query: 280 QYVVTYT--DPSGKETMKTVPGDQTEIVLDGLSPDTPYQVKVNSIKGGKKSTDGPSQPFKTLPKVPPPTNVDTPNLQPTSTDISYD-LDSSTPPVKDIEVILINRETKEAKTLTFPANSPKGTFSIPDLVSGTQYTVKMTSVSPDGRKSEPTEKDFTTTGPKPVEKPTVSDVLPMSAKVSWPASKNPVDTYEITVKDKDGNVVRTIPGIPGTSTEATIGQLTPETDYTVTVRGVKDGVKGTDSPASDPFKTLPVVPAPQNVQSKETTADSATLTYDIPPNNADVKTLKAVVTTRDGTTVKTIEVP-AQEPSGEISIPGLQPGTEYFVRVKSVSGDDRTSEYTTSQPFTTAGGQKPGQPISDMVSDTL---ARVKWPANTEPVDEYEVTLTDSSGQTTTKRVPGDVTTASFMNLDPDSPYSVTVTAIKDKVPGLPSE-KADFKTLPKASQPTNVSVGDE----TETTAKVSYETDDSLYRVQAVITNLNNGEQSLEEVPAGDNMIPLDGLSPGTDYKVVLRGVTKDGR 1824
+Y+V YT G E VPGDQT ++ L P Y ++V +I KKS + + +P P + +++ TS ++ +D LD + + E+I N ++ +T P+ ++ L G +Y + + V + R P K TTT + V DV +A ++W +D E+T KD RT + + +IG L P+T+Y V++ + + + +PA + F T + AP+N++ T +S TL + A + + + G ++VP +Q+ + + ++ GL+PGTEY + V +V D S P T + P VS+T + W D Y + + +GQ ++P + T+ L+P Y+V +TA K + P+ KA + P+ T VG + T A +YE + +Q N ++L VP + + GL T Y V + GV + R
Sbjct: 651 EYLVVYTPTHEGGLEMQFRVPGDQTSTIIQELEPGVEYFIRVFAILENKKSIPVSA---RVATYLPAPEGLKFKSIKETSVEVEWDPLDIA---FETWEIIFRNMNKEDEGEITKSLRRPETSYRQTGLAPGQEYEISLHIVKNNTRG--PGLKRVTTTRLDAPSQIEVKDVTDTTALITWFKPLAEIDGIELTYGIKDVPGDRTTIDLTEDENQYSIGNLKPDTEYEVSLISRRGDM--SSNPAKETFTT--GLDAPRNLRRVSQTDNSITLEW--RNGKAAIDSYRIKYAPISGGDHAEVDVPKSQQATTKTTLTGLRPGTEYGIGVSAVKEDKE------SNPATINAATELDTPKDLQVSETAETSLTLLWKTPLAKFDRYRLNYSLPTGQWVGVQLPRNTTSYVLRGLEPGQEYNVLLTAEKGRHKSKPARVKASTEQAPELENLTVTEVGWDGLRLNWTAADQAYEH----FIIQVQEANKVEAARNL-TVPGSLRAVDIPGLKAATPYTVSIYGVIQGYR 1152 The following BLAST results are available for this feature:
BLAST of TCONS_00002459 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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