TCONS_00002459-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00002459-protein
Unique NameTCONS_00002459-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1106

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00002459-protein ID=TCONS_00002459-protein|Name=TCONS_00002459-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1106bp
RAVVEVTNTETGQAEPVSNRPINTPVPFTGLVSGTTYSVRAKSLTPDGRE
SEYSTPVTFTTGGTKPIHPVRPSDFGETTTKISWDAPPGEAPEQYVVTYT
DPSGKETMKTVPGDQTEIVLDGLSPDTPYQVKVNSIKGGKKSTDGPSQPF
KTLPKVPPPTNVDTPNLQPTSTDISYDLDSSTPPVKDIEVILINRETKEA
KTLTFPANSPKGTFSIPDLVSGTQYTVKMTSVSPDGRKSEPTEKDFTTTG
PKPVEKPTVSDVLPMSAKVSWPASKNPVDTYEITVKDKDGNVVRTIPGIP
GTSTEATIGQLTPETDYTVTVRGVKDGVKGTDSPASDPFKTLPVVPAPQN
VQSKETTADSATLTYDIPPNNADVKTLKAVVTTRDGTTVKTIEVPAQEPS
GEISIPGLQPGTEYFVRVKSVSGDDRTSEYTTSQPFTTAGGQKPGQPISD
MVSDTLARVKWPANTEPVDEYEVTLTDSSGQTTTKRVPGDVTTASFMNLD
PDSPYSVTVTAIKDKVPGLPSEKADFKTLPKASQPTNVSVGDETETTAKV
SYETDDSLYRVQAVITNLNNGEQSLEEVPAGDNMIPLDGLSPGTDYKVVL
RGVTKDGRISDSTDEVTFKTLEPTTTTPEPTTTTTEAPLTTTTEEPTTTT
TEEPTTTTTEEPTTTTTEEPTTTTAQATPETTTTPQDFPDTTTTTEAPTT
TVKAKKLKCQHPTLDFFCKKKDGYVPHPQSPHYFMNCWAGRVEGCYKCPQ
SSFFNVDCNXCSNYLSGTADCPATTTTTTQSPPTQANPTTTTQAAPTTTQ
AVPTTTQAAPTTTQAAPTTTQAATTTTQPAPTTTQAAPTTTTEAPTQANP
TTTTKAPTTTTTKAPTQADNSQSCPLNICWERHVRSGYIIHPTNPKRFIQ
CDFFMTRGCHNCPDHTVFNPVGNYCDHPHNVKRMMRYTQAPAKTTQAPTQ
QAPDTTVAPTNPPTQPTNPPTDPPTQQAQTDPPTDPTDPPTDPPTDPPTD
PTDPPTDPTDPPTDPPTQAQPTTTTTTKAPYLHPRSTQSSGGNDQSCPNL
CEQTGTQFGYMAHPSNPKRFIQCAHGRTAGCQNCAPGTSYVPQVGIFPHS
TGGHCA
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_001315XLOC_001315Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00002459TCONS_00002459Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002557Chitin-bd_dom
IPR003961FN3_dom
IPR013783Ig-like_fold
Vocabulary: Cellular Component
TermDefinition
GO:0005576extracellular region
Vocabulary: Biological Process
TermDefinition
GO:0006030chitin metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0008061chitin binding
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006030 chitin metabolic process
cellular_component GO:0005576 extracellular region
molecular_function GO:0008061 chitin binding
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002557Chitin binding domainSMARTSM00494chi_10coord: 1049..1102
e-value: 3.7
score: 13.4
coord: 716..773
e-value: 3.1
score: 14.4
coord: 872..932
e-value: 0.7
score: 18.9
IPR002557Chitin binding domainGENE3D2.170.140.10coord: 862..945
e-value: 7.6E-7
score: 28.4
coord: 705..784
e-value: 1.4E-5
score: 24.4
coord: 1037..1100
e-value: 0.0012
score: 18.2
IPR002557Chitin binding domainPFAMPF01607CBM_14coord: 885..931
e-value: 1.1E-5
score: 25.3
IPR002557Chitin binding domainPROSITEPS50940CHIT_BIND_IIcoord: 876..935
score: 6.886
IPR002557Chitin binding domainPROSITEPS50940CHIT_BIND_IIcoord: 715..773
score: 8.167
IPR002557Chitin binding domainPROSITEPS50940CHIT_BIND_IIcoord: 1048..1106
score: 6.81
IPR002557Chitin binding domainSUPERFAMILY57625Invertebrate chitin-binding proteinscoord: 883..932
IPR003961Fibronectin type IIISMARTSM00060FN3_2coord: 345..428
e-value: 1.4E-7
score: 41.2
coord: 63..142
e-value: 3.5E-6
score: 36.5
coord: 532..610
e-value: 0.015
score: 24.5
coord: 251..330
e-value: 8.4E-6
score: 35.3
coord: 441..518
e-value: 0.014
score: 24.6
coord: 156..238
e-value: 2.9
score: 16.1
IPR003961Fibronectin type IIIPFAMPF00041fn3coord: 444..518
e-value: 7.3E-9
score: 35.8
coord: 346..424
e-value: 2.0E-9
score: 37.5
coord: 253..330
e-value: 3.8E-11
score: 43.1
coord: 67..139
e-value: 8.6E-11
score: 41.9
IPR003961Fibronectin type IIIPROSITEPS50853FN3coord: 534..623
score: 15.464
IPR003961Fibronectin type IIIPROSITEPS50853FN3coord: 347..441
score: 17.783
IPR003961Fibronectin type IIIPROSITEPS50853FN3coord: 253..344
score: 17.704
IPR003961Fibronectin type IIIPROSITEPS50853FN3coord: 443..531
score: 15.929
IPR003961Fibronectin type IIIPROSITEPS50853FN3coord: 158..252
score: 12.852
IPR003961Fibronectin type IIIPROSITEPS50853FN3coord: 1..64
score: 11.677
IPR003961Fibronectin type IIIPROSITEPS50853FN3coord: 66..155
score: 18.044
IPR003961Fibronectin type IIICDDcd00063FN3coord: 3..61
e-value: 5.14968E-4
score: 38.6315
IPR003961Fibronectin type IIICDDcd00063FN3coord: 346..438
e-value: 6.06868E-7
score: 47.4911
IPR003961Fibronectin type IIICDDcd00063FN3coord: 251..341
e-value: 2.50692E-10
score: 57.8915
IPR003961Fibronectin type IIICDDcd00063FN3coord: 66..152
e-value: 2.82969E-8
score: 51.7283
IPR003961Fibronectin type IIICDDcd00063FN3coord: 443..528
e-value: 7.01797E-7
score: 47.4911
IPR003961Fibronectin type IIICDDcd00063FN3coord: 533..619
e-value: 1.03302E-4
score: 40.9427
IPR003961Fibronectin type IIISUPERFAMILY49265Fibronectin type IIIcoord: 150..251
IPR003961Fibronectin type IIISUPERFAMILY49265Fibronectin type IIIcoord: 443..622
IPR003961Fibronectin type IIISUPERFAMILY49265Fibronectin type IIIcoord: 251..438
IPR003961Fibronectin type IIISUPERFAMILY49265Fibronectin type IIIcoord: 16..157
IPR013783Immunoglobulin-like foldGENE3D2.60.40.10coord: 168..251
e-value: 3.3E-6
score: 26.7
coord: 449..534
e-value: 1.9E-13
score: 50.0
IPR013783Immunoglobulin-like foldGENE3D2.60.40.10coord: 535..633
e-value: 1.2E-9
score: 37.8
IPR013783Immunoglobulin-like foldGENE3D2.60.40.10coord: 350..448
e-value: 4.8E-11
score: 42.4
coord: 64..167
e-value: 7.7E-14
score: 51.4
IPR013783Immunoglobulin-like foldGENE3D2.60.40.10coord: 2..62
e-value: 9.5E-7
score: 28.6
IPR013783Immunoglobulin-like foldGENE3D2.60.40.10coord: 252..349
e-value: 2.8E-14
score: 52.8

Blast
[Close]
BLAST of TCONS_00002459-protein vs. Swiss-Prot (Human)
Match: TENA (Tenascin OS=Homo sapiens GN=TNC PE=1 SV=3)

HSP 1 Score: 113.62 bits (283), Expect = 3.282e-25
Identity = 135/539 (25.05%), Postives = 231/539 (42.86%), Query Frame = 0 
Query:   82 ISWDAPPGEAPEQYVVTYT--DPSGKETMKTVPGDQTEIVLDGLSPDTPYQVKVNSIKGGKKSTDGPSQPFKTLPKVPPPTNVDTPNLQPTSTDISYD-LDSSTPPVKDIEVILINRETKEAKTLTFPANSPKGTFSIPDLVSGTQYTVKMTSVSPDGRKSEPTEKDFTTTGPKPVEKPTVSDVLPMSAKVSWPASKNPVDTYEITVKDKDGNVVRTIPGIPGTSTEATIGQLTPETDYTVTVRGVKDGVKGTDSPASDPFKTLPVVPAPQNVQSKETTADSATLTYDIPPNNADVKTLKAVVTTRDGTTVKTIEVP-AQEPSGEISIPGLQPGTEYFVRVKSVSGDDRTSEYTTSQPFTTAGGQKPGQPISDMVSDTL---ARVKWPANTEPVDEYEVTLTDSSGQTTTKRVPGDVTTASFMNLDPDSPYSVTVTAIKDKVPGLPSE-KADFKTLPKASQPTNVSVGDE----TETTAKVSYETDDSLYRVQAVITNLNNGEQSLEEVPAGDNMIPLDGLSPGTDYKVVLRGVTKDGR 608
            ++WD        +Y+V YT     G E    VPGDQT  ++  L P   Y ++V +I   KKS   P    +    +P P  +   +++ TS ++ +D LD +    +  E+I  N   ++   +T     P+ ++    L  G +Y + +  V  + R   P  K  TTT      +  V DV   +A ++W      +D  E+T   KD    RT   +     + +IG L P+T+Y V++   +  +  + +PA + F T   + AP+N++    T +S TL +      A + + +       G     ++VP +Q+ + + ++ GL+PGTEY + V +V  D        S P T     +   P    VS+T      + W       D Y +  +  +GQ    ++P + T+     L+P   Y+V +TA K +    P+  KA  +  P+    T   VG +      T A  +YE     + +Q    N     ++L  VP     + + GL   T Y V + GV +  R
Sbjct:  641 LAWDNEM--RVTEYLVVYTPTHEGGLEMQFRVPGDQTSTIIQELEPGVEYFIRVFAILENKKSI--PVSA-RVATYLPAPEGLKFKSIKETSVEVEWDPLDIA---FETWEIIFRNMNKEDEGEITKSLRRPETSYRQTGLAPGQEYEISLHIVKNNTRG--PGLKRVTTTRLDAPSQIEVKDVTDTTALITWFKPLAEIDGIELTYGIKDVPGDRTTIDLTEDENQYSIGNLKPDTEYEVSLISRRGDM--SSNPAKETFTT--GLDAPRNLRRVSQTDNSITLEW--RNGKAAIDSYRIKYAPISGGDHAEVDVPKSQQATTKTTLTGLRPGTEYGIGVSAVKEDKE------SNPATINAATELDTPKDLQVSETAETSLTLLWKTPLAKFDRYRLNYSLPTGQWVGVQLPRNTTSYVLRGLEPGQEYNVLLTAEKGRHKSKPARVKASTEQAPELENLTVTEVGWDGLRLNWTAADQAYEH----FIIQVQEANKVEAARNL-TVPGSLRAVDIPGLKAATPYTVSIYGVIQGYR 1152
The following BLAST results are available for this feature:
BLAST of TCONS_00002459-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TENA3.282e-2525.05Tenascin OS=Homo sapiens GN=TNC PE=1 SV=3[more]
back to top