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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00002456 ID=TCONS_00002456|Name=TCONS_00002456|organism=Clytia hemisphaerica|type=transcript|length=594bp
ATTTGATCTTGGAGTTCCTTTTGTTGCTGAGTGGTACGAAATCTAGTAGT
AAATCTTACTTTCGATCCAGCAGTTGTATGTAAAACAATGTGGATCCCGC
GTGTTCAATGGGGGGAATAACGGCTTCGTTACCCATCCAAGAGATTTGAT
TTTATCTATTCAAGgctcttaaaatccaatgggcttttcctgaaataaaC
CGTTCATGGGTTCAGGAGATATATCGTCCAGGGGTATcgaaaaaatcctg
aaaaactgccatGTCCATGAATTTGCAATATCCAGGGGATCGATTTGATG
CTTGTCCATGGGGTGAAAAATGGAAATGTTCAAGGGTagatcattgaaaa
aataatacccCCATGAACgaatattttctggaagagcccaatgattCAGA
ACATTCGACGAATCTATTTATGGTAAATAGCCTCACGTACTTGACAAAGA
ATGTAAATTTGATAGTGATCCATTTATAACCGAAGACATTAGATGTGATA
AATGAGCAGATAAAATGCTCGTTTCTTAAAAACTATTACAAAAATGACTC
AAAAGATACTGTTATAGATAACAAAATACCGTCATGTATCTCGG Run BLAST on NCBI transcript from alignment at sc0000020:698831..701797+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00002456 ID=TCONS_00002456|Name=TCONS_00002456|organism=Clytia hemisphaerica|type=transcript|length=2967bp|location=Sequence derived from alignment at sc0000020:698831..701797+ (Clytia hemisphaerica)
ATTTGATCTTGGAGTTCCTTTTGTTGCTGAGTGGTACGAAATCTAGTAGT
AAATCTTACTTTCGATCCAGCAGTTGTATGTAAAACAATGTGGATCCCGC
GTGTTCAATGGGGGGAATAACGGCTTCGTTACCCATCCAAGAGATTTGAT
TTTATCTATTCAAGgctcttaaaatccaatgggcttttcctgaaataaaC
CGTTCATGGGTTCAGGAGATATATCGTCCAGGGGTATcgaaaaaatcctg
aaaaactgccatgtccatggggtgaatttgcaatgtccaggggatCGATT
TGATGCTTCTCCAGGGCTAAAAcgcgtgtccagggggtgaaaaatgGAAA
TGTTCAAGGGTagatcattgaaaaaataatacccCCATGAACgaatattt
tctggaagagcccaatgattCAGAACATTCGACGAATCTATTTATGGTAA
ATAACCTCACGTACATAATGGGGCTATCAACATAAAGAATGTATATTTGA
TAGTGATCCATTTATAACCGAAGACATTAGATGTGATAAATGAGCAGATA
AAATGCTCGTTTCTTAAAAACTATTACAAAAATGACTCAAAAGATACTGT
TATAGATAACAAAATACCGTCATGTATCTCGGCATGATGAGAATATTTAG
TATAAGTAGATTAAAATATTACGATAGTACATTACTTTGTATGAGAAAGA
AAGTAGAAAAAATGCTGTTATTTAGCTGATTTTCCTGGAAATAGAGATTT
TTATAATTCCGTTCAATTTTAGTTGGGAAACAGTCCCAATTCTTTTTTCA
TGTTACATTACGAAATTATCTAGACAATGGACTACCCTTACAATCTTGAA
CTTCTATTTGTTCGAATCTTATTCTGTAATTCGAACTAATTCGCAGTCCC
GTAAGAGAAGAAAACGTCATAAAATACTTTGTATAACCCAAACCTCTGGT
GTTGCTCGACCAAATCCCTCATAAAAATCCATTTCCCATTCGAGTTCGAT
TTAGCAAGGGTCAACTGTATAATATTAATGAATCTTTTGAAAGCGCAATT
TTAACATGTTTAGAAGATAATATAGTGGCGCAAACCGCTTGGGGGCCTCA
TAGTGGATATACATAGCTAATTAGAAATAATCTCACTGGACCAAATTTGA
TGAACTCTTTTTTGGGTGTCTTTCAGTATTCCTGTATTACTAGTAGTCCG
AAACTCTTGACTAACTTGTTTTTTTGCAAATACAAATATTTCTCAATTTC
CAAAAGCTAATTGAAGCACCCCTTAATTATGATTTTTATGACCTTTTTCA
GTTAATTAGAATAAGCACCGATTTAGTGTTTTTTGCTTATTAGTTTAAAA
AGACCTGCGAAATTAGGACTAATTATACCAAACTCTTTAACTACAAATCA
AGGCACACCACAGATTATATTCAAATGTGAACTAAATTAGAAATTTAATC
AAtgatctattttcaataaaggcattgttaattaattgaaaaattctttc
agtGTTTTGCTTAGATTCTCACGATATCGCTGTCCATGtatgatttaatt
ttttctatttctccCAAAAAGCCTTCAGTCCTCAAATAGTATTATTGTTG
CAATCTTTATAGCCAAGATTATGACATGACGATTTCCTACCGTCCGTATT
TGTTGAAGATAGCCCGGGGTTAAAGCTTTCCAATAGATTGTTTAGTACCG
ATTGACAttacagtccgccagattttagttgttttttggAAAGTAAAAAC
AGtataaagcaatgtttttattgagaataagggattgcaattctgttgtt
attgtttgtttatcatttttgattatatctttcaactccaagtagtttta
ttgttatttggattgttaacattttctctcaaaatgacGACCTcaccaaa
cgctcctagtctacttcactggactcagcgtcacaaaaaattatgaaaaa
gcaaagttcagccaaatgTAGACTCTAGTCTTTGTTGAAGACTGCACGAA
TTACCCCTCCGAGTCATCATGTATGATTAAAAAACCTCATATCTCAGCCA
ACCCAGCTGACTGTTTTTGGAGACACAATTAACTTTTTAAGCAGATTGAT
GTTTGGAATTCAGAaaatttgtttactttctatGCCGCCCACTCAATTAG
AAATTAGAAGAAGTAATTTTGTATCAAAACGCTATCTTAAAGTACTTTCG
GATTTTATTACTTGATTGAGAAAGTCAAAGTTCGTCAAAGTTTGTTTCGA
TGATATGCTATCCATCATCATCTTTTTAGAGGTACTTTAAAGTATCGAAA
GTAGCTTTGCCTCGTTGTCTTgggttcttccagaaaaaaatctgaatatg
ggggggggggggNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNaacattttaggctgaaaattgctaaaaaaataagcaca
tccaggctcagtcaaattttaggtgttctaataaaaaaaaaacgtgtata
tcgtCCAGGGGTATcgaaaaaatcctgaaaaacatGTCCATGAATTTGCA
ATATCCAGGGGATCGATTTGATGCTTGTCCATGGGGTGAAAAATGGAAAT
GTTCAAGGGTagatcattgaaaaaataatacccCCATGAACgaatatttt
ctggaagagcccaatgattCAGAACATTCGACGAATCTATTTATGGTAAA
TAGCCTCACGTACTTGACAAAGAATGTAAATTTGATAGTGATCCATTTAT
AACCGAAGACATTAGATGTGATAAATGAGCAGATAAAATGCTCGTTTCTT
AAAAACTATTACAAAAATGACTCAAAAGATACTGTTATAGATAACAAAAT
ACCGTCATGTATCTCGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00002456-exon-sc0000020-1491911889:698831..699090 | TCONS_00002456-exon-sc0000020-1491911889:698831..699090 | Clytia hemisphaerica | exon |
| TCONS_00002456-exon-sc0000020-1510915933:698831..699090 | TCONS_00002456-exon-sc0000020-1510915933:698831..699090 | Clytia hemisphaerica | exon |
| TCONS_00002456-exon-sc0000020-1575043694:698831..699090 | TCONS_00002456-exon-sc0000020-1575043694:698831..699090 | Clytia hemisphaerica | exon |
| TCONS_00002456-exon-sc0000020-1491911889:701464..701797 | TCONS_00002456-exon-sc0000020-1491911889:701464..701797 | Clytia hemisphaerica | exon |
| TCONS_00002456-exon-sc0000020-1510915933:701464..701797 | TCONS_00002456-exon-sc0000020-1510915933:701464..701797 | Clytia hemisphaerica | exon |
| TCONS_00002456-exon-sc0000020-1575043694:701464..701797 | TCONS_00002456-exon-sc0000020-1575043694:701464..701797 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000020 | supercontig | sc0000020:698831..701797 + |
Blast
The following BLAST results are available for this feature:
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