TCONS_00002419 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002419
Unique NameTCONS_00002419
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2030

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002419 ID=TCONS_00002419|Name=TCONS_00002419|organism=Clytia hemisphaerica|type=transcript|length=2030bp
CCAATGATTTACAACGAAGGTTAACACTAATAAAATTGATTGGTGGCATA
CATTAACCGCCATTCAATCATGGCGTGCAAcaaacaaaatggaaagtcca
AGAAAAATCCTACCGCCCACAAGACCATACCGACTGGTTTTCAATTCGAG
ATTGCCGGCACCGAGCGAAAGGAATTTGAGTGTCCTATCTGTTTATGCAT
CATGAGGAATGCGACTGAACTGCCGTGTGAACATTTAATGTGCCAAGAGT
GTTTGGAATATTTTGAACAAGACAAGGTTGCCTGTGCAAAAAGAAAAAAG
CAGTGAGATCAGTGGATAGAATGATACAGACTACAGTTCTCGTCAAATGT
TTACAATCAGGATGTGATTGGATTGGCTGCATCCAGGACCAACCGgaGCA
CGACAGGAAATGCCGATCCGTAAGAATGCAATGTCCATACCACAGCATTG
GATGCTTGGCACGTttcaaaCAAGGAGAATTGACGGAacatatcaaaaca
aatcaagaGAATCATTGTATGCTGGTGTTGATTGCCGTCAATGGTCTTgc
caaagaaaaagagaaatattgCCAGAAAATTGCTGATCAAAATAAGAAGC
TAGAATCCTATGAATGTTTTGAAACACTGCTCCAAGGGAACATTAAACGT
CTCGACGTTTTGGAAAGAGACAATTTAGAACTGAAATCGAAACTTGGGAA
TTATGAAAAATTGGCTCATGAAAATGCAAGCATCTTACAGCGATTGGAAT
CTTTGGAACAAAAATATGACGCGTTGCTTAAGGCTGTGGCGTTCAGCAAC
CCAGCGAGATTACAGAATTTAGTAGCAGAGAATAAGGCTCTTAGCCAAAC
TGTAAGTGAGCTGAAAAAGATGGTTCAGAATCAACCATCCAATGTTCATC
TCGACGTTGGTAGATGTCAACAATTGTTGCTTGAAAGTTCAAAACACGCA
AAGAGATTGAATGCATTggaaagtgaaaataaagagTTAAAGAAGATTGC
CAAAGAACAGAAAAAGGAGATAACAACTCTAACAGAAGGTcttgatcatt
tgaaaaaagatgTTTCCCGAGAGCAGAAAAGAGTCAATTCGGAATTCGCT
GATTTTAATCGACTTATCGAAAGCATGACTGGCGAAGTTGCCTATCTTGA
AGAAGACATTGTAGGCTTGACGTCTTTTGCCGAAAAAGTCTCCAAACTTC
ATTTGCAGTTGAGTGATAAACAATTGTGGGAGGCTAGCTCCGTTATTCAA
TTTCTCAAGAAGAAACATTACGATAGTCATGCTACTGTTCAAAAATGGGA
TAAACTATCCGACGATATCAGATATGATCTTTCCACCATCAAAGTAGAAG
ATACTAGTTACCTTGATACTCTCCAGCAAGCAGTTAGCAGTTACAAAGAA
ACCATTTTTCCACATGCTTGGAACGCTAGAATTAAGAAACTGTTTGATTT
TCTACCCTATGGTTATTTGGTAGGTGCTTACGTCAAAGTTGCATGCGGGC
CTTTGAACCATATTAAGGTGGATGTGTACCGGTCTGTTGTTGAATTTAAC
TTGGAAACcagcaaagaaaaatatcataaacattCCTCCTTGGTTGCCAG
TTATCGACATTACAGTGAGGATTGTTTGCACGTGGCATTTTATCACTACC
GTGCTATTGAAAGCTTACGATTGCTTAATTGGGATGATGAAgtgaaatca
aagaaattgaTGCCTGGCAAAATGGTGAATTTAGATGATCAGTTCTCAGG
GTATGGTTGTGTCATCTTGGAAATGTCGAGGAAATGATTTATTATTTGTC
ATCGTATTCATTGTTTTACTGATTATTCTTTAAACGatgttttctgtttt
tctaCTCTAGCTCTATAGTCGAGTACTATTGTTGTGAGTATTGAGTTTCA
CtttataaaactttttattttttccacacttgtatatttttgagtaCGAT
AGAAAAGATAATAGGATATTTAGATTATAGGGCTTTATAGATGCCGTTTG
TTGTAtttttgtatcatttttttAGGAAAG
Run BLAST on NCBI

transcript from alignment at sc0000020:116973..120970+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002419 ID=TCONS_00002419|Name=TCONS_00002419|organism=Clytia hemisphaerica|type=transcript|length=3998bp|location=Sequence derived from alignment at sc0000020:116973..120970+ (Clytia hemisphaerica)
CCAATGATTTACAACGAAGGTTAACACTAATAAAATTGATTGGTGGCATA
CATTAACCGCCATTCAATCATGGCGTGCAAcaaacaaaatggaaagtcca
AGAAAAATCCTACCGCCCACAAGACCATACCGACTGGTTTTCAATTCGAG
ATTGCCGGCACCGAGCGAAAGGAATTTGAGTGTCCTATCTGTTTATGCAT
CATGAGGAATGCGACTGAACTGCCGTGTGAACATTTAATGTGCCAAGAGT
GTTTGGAATATTTTGAACAAGACAAGGTTGCCTGTGCAAAAAGGTAAATG
TATAGAGTGTAGAACATAGAGAAAGTGTCTTCTTcgcatctattgtttca
ttttcaaaacaaagttaaaacacATGCGTATTTATAAGCTGTTAGTCGTT
ATTATACGCAATATACACAAAGATGAATGAATACGTAGGGGTGGTACAGC
CACTTTCGAgccactttcggtcggggttgtggatggtgaaatttgtcgtt
cttttttaaattttcgctCTCTTTTTTAATGCTGCGAAGAAGGCACTTTC
TCCCCCTCGTAGTTGTTAAAATGAACCTTTTAATACAGTAAtaataggcg
ttatatgataataccgAAATTATTACGGGGTAATACTATCGCGTAAAAAA
TTTGTTCTTCCATTATGTTTTACTTAAAATTGTCGTAAGTATAatagaaa
ataaagaataatttcaattttgcttGCACTCTCTTGTAAAGTATTTGCGC
TTCCTCCTCATTGACTGTGGTTTTTTAAAGATGtaacattgggctcttcc
attaaaaatccatacagggggtggacgaacctttttaagTCAAATAAGAT
TCTTGGAAATATGTGGGTATGTACCCcttttgcaaaatttgcaaagaaac
cGTTAATAACTTCTTACGaactggaaaatgaaaaacacttcTTTAGATAC
CCCTGGAAATTCCTCTCtggttaccccctggaaatgttggtccaaccccc
tgtatggatacaATTTATATTGGCAAACGTTAATCTCGTGATCCGACCCA
CGATAAACTTCAAATATGAATAAACTATACATCCAGACTTATTGTGTTGG
CCCTGTCTAGCCCCCAACATACTTATAGGTTtgtctaaagaatcctgcat
ttactaaaaataaaaaaaagaacgacaaattacggtAGCTGTAAAAGAAA
TAATACATTTTGTTTAGGAATGGTCAAGCAAAATTCCAATGCAGCGTGTG
CATGACACCTTACAAGAAAGATGACGTAAGTCCATGAGCCCATGAGAATA
AGACTCTTTCCTCACGTTACGGTTTCGATATACTCCAACTAACTATCAAT
TATTCTATCCATCTATCACGTTcgaaactgaaaaataaaattgtataTCC
ATcaatatagaccttttcataaattacgtcacgaacatcacttgcctcgt
attcaaacaattaccatggtgattattatatcccttgagacattaaataa
tttttttatgaatagaaagtagttttaataataATGGGAGATTTATCACC
Tttgcaataatttcaaaacgaggcaagtgatgtttgtgacgtaatttatg
aaaaggtctattcggaggtgaaaattagttcttgaAATTCCCTTCCATCC
TTTGATAGGCCAttccatattcaaaatgaattaCAGTACTCTAGTAAAGA
CTTAGGTCCTATTGGCCAGATGAGAAAACTTCAAAGTCTTTGACCTTTAT
GACGTGGTCATTGGTCCCGTTTACCTACACGTAACTCCCTATCGACAGAG
AAAATTACTTATTGTAGAAATCTTAATAATTGAATTTCGATATCTTCACA
ACAGAAAAAAGCAGTGAGATCAGTGGATAGAATGATACAGACTACAGTTC
TCGTCAAATGTTTACAATCAGGATGTGATTGGATTGGCTGCATCCAGGAC
CAACCGGTAAAAACCCGTTATGTGAAACATGCCTCTACCccaccccgctt
attaattttcgaaaaattttcggaCAGCCcagttttagattttttggccc
ccccccccgtactattcgggaccttagagtaagtGCAACCTCAACCACGA
TTGGAAAATTTATGCCCATTCTTGATACTTAACTtgttctgtttgttttt
ttcaggaGCACGACAGGAAATGCCGATCCGTAAGAATGCAATGTCCATAC
CACAGCATTGGATGCTTGGCACGTGTAAGATTGAAATCTCTTTTTTAAGT
TTGAAGCTCTTATTTCAAGTTTCTAGCCACAATAAATCAGGCTTAACCTC
CGTATCTGGAATAATGTTTCGAATTGAGCCAAATGGCCTGAGGAATCAGC
GCCACAATCTGAGACTTCCGAATCGAAATGAGTTCCTACCGTGTTTCTGA
TTTTTAATACCCcgttaaatttttatttttagttcaaaCAAGGAGAATTG
ACGGAacatatcaaaacaaatcaagaGAATCATTGTATGCTGGTGTTGAT
TGCCGTCAATGGTCTTgccaaagaaaaagagaaatattgCCAGAAAATTG
CTGATCAAAATAAGAAGCTAGAATCCTATGAATGTTTTGAAACACTGCTC
CAAGGGAACATTAAACGTCTCGACGTTTTGGAAAGAGACAATTTAGAACT
GAAATCGAAACTTGGGAATTATGAAAAATTGGCTCATGAAAATGCAAGCA
TCTTACAGCGATTGGAATCTTTGGAACAAAAATATGACGCGTTGCTTAAG
GCTGTGGCGTTCAGCAACCCAGCGAGATTACAGAATTTAGTAGCAGAGAA
TAAGGCTCTTAGCCAAACTGTAAGTGAGCTGAAAAAGATGGTTCAGAATC
AACCATCCAATGTTCATCTCGACGTTGGTAGATGTCAACAATTGTTGCTT
GAAAGTTCAAAACACGCAAAGAGATTGAATGCATTggaaagtgaaaataa
agagTTAAAGAAGATTGCCAAAGAACAGAAAAAGGAGATAACAACTCTAA
CAGAAGGTcttgatcatttgaaaaaagatgTTTCCCGAGAGCAGAAAAGA
GTCAATTCGGAATTCGCTGATTTTAATCGACTTATCGAAAGCATGACTGG
CGAAGTTGCCTATCTTGAAGAAGACATTGTAGGCTTGACGTCTTTTGCCG
AAAAAGTCTCCAAACTTCATTTGCAGTTGAGTGATAAACAATTGTGGGAG
GCTAGCTCCGTTATTCAATTTCTCAAGAAGAAACATTACGATAGTCATGC
TACTGTTCAAAAATGGGATAAACTATCCGACGATATCAGATATGATCTTT
CCACCATCAAAGTAGAAGATACTAGTTACCTTGATACTCTCCAGCAAGCA
GTTAGCAGTTACAAAGAAACCATTTTTCCACATGCTTGGAACGCTAGAAT
TAAGAAACTGTTTGATTTTCTACCCTATGGTTATTTGGTAGGTGCTTACG
TCAAAGTTGCATGCGGGCCTTTGAACCATATTAAGGTGGATGTGTACCGG
TCTGTTGTTGAATTTAACTTGGAAACcagcaaagaaaaatatcataaaca
ttCCTCCTTGGTTGCCAGTTATCGACATTACAGTGAGGATTGTTTGCACG
TGGCATTTTATCACTACCGTGCTATTGAAAGCTTACGATTGCTTAATTGG
GATGATGAAgtgaaatcaaagaaattgaTGCCTGGCAAAATGGTGAATTT
AGATGATCAGTTCTCAGGGTATGGTTGTGTCATCTTGGAAATGTCGAGGA
AATGATTTATTATTTGTCATCGTATTCATTGTTTTACTGATTATTCTTTA
AACGatgttttctgtttttctaCTCTAGCTCTATAGTCGAGTACTATTGT
TGTGAGTATTGAGTTTCACtttataaaactttttattttttccacacttg
tatatttttgagtaCGATAGAAAAGATAATAGGATATTTAGATTATAGGG
CTTTATAGATGCCGTTTGTTGTAtttttgtatcatttttttAGGAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001302XLOC_001302Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002419-exon-sc0000020-1491911889:116973..117265TCONS_00002419-exon-sc0000020-1491911889:116973..117265Clytia hemisphaericaexon
TCONS_00002419-exon-sc0000020-1510915933:116973..117265TCONS_00002419-exon-sc0000020-1510915933:116973..117265Clytia hemisphaericaexon
TCONS_00002419-exon-sc0000020-1575043694:116973..117265TCONS_00002419-exon-sc0000020-1575043694:116973..117265Clytia hemisphaericaexon
TCONS_00002419-exon-sc0000020-1491911889:118827..118928TCONS_00002419-exon-sc0000020-1491911889:118827..118928Clytia hemisphaericaexon
TCONS_00002419-exon-sc0000020-1510915933:118827..118928TCONS_00002419-exon-sc0000020-1510915933:118827..118928Clytia hemisphaericaexon
TCONS_00002419-exon-sc0000020-1575043694:118827..118928TCONS_00002419-exon-sc0000020-1575043694:118827..118928Clytia hemisphaericaexon
TCONS_00002419-exon-sc0000020-1491911889:119128..119196TCONS_00002419-exon-sc0000020-1491911889:119128..119196Clytia hemisphaericaexon
TCONS_00002419-exon-sc0000020-1510915933:119128..119196TCONS_00002419-exon-sc0000020-1510915933:119128..119196Clytia hemisphaericaexon
TCONS_00002419-exon-sc0000020-1575043694:119128..119196TCONS_00002419-exon-sc0000020-1575043694:119128..119196Clytia hemisphaericaexon
TCONS_00002419-exon-sc0000020-1491911889:119405..120970TCONS_00002419-exon-sc0000020-1491911889:119405..120970Clytia hemisphaericaexon
TCONS_00002419-exon-sc0000020-1510915933:119405..120970TCONS_00002419-exon-sc0000020-1510915933:119405..120970Clytia hemisphaericaexon
TCONS_00002419-exon-sc0000020-1575043694:119405..120970TCONS_00002419-exon-sc0000020-1575043694:119405..120970Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000020supercontigsc0000020:116973..120970 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
11.4833	11.3974	19.048	19.3241	1.19583	0.530357	2.6524	3.31982	3.00859	2.83682	2.45773	1.96495	2.56237	1.8706	3.54881	4.62902	3.90476	3.81555	1.66217	1.27009	2.31007	2.53044	6.34947	7.32991	4.04402	4.1896	2.86774	3.36594	5.46989	5.12665
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00002419 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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