TCONS_00002414 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002414
Unique NameTCONS_00002414
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1488

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002414 ID=TCONS_00002414|Name=TCONS_00002414|organism=Clytia hemisphaerica|type=transcript|length=1488bp
ccaccaaggaATTGTTCAAATACTTGAAAAAGTCTCTTATGTACAAgGAT
TATTCAAGATATGAAGTACTAAAagCTGCAATGAACCTTATCAACACACA
TGGAACTTTATGGAAAGAATACTTAACTAAAGATGCAGAGgaaaTAATAC
AAGCCTTGAACCATTGGAGTGATCATCTGAATCGTGATGTCAAATATCTT
GCAATGGATACTGTCAATTACGTGTTACTCCAGATCTCAGTTTTCATTTC
GGAGCAAGGAAAAGTTGGACAAAAACAATATGCATCAACTTTACtgAAAC
TAATGCAAAAGTTTTCGAAGACGTTGTCCTCTTCTCAACCCTCAGCTAAA
GAATTATCAATGGCAATTAACGGATATGGGAAATTATCAGAGGTATCTCG
GCTTCTTTTATGTTTTCACTCgataaatatgtttttaggggaaaaaatac
ctttattgggtctcaattatgaaatcttgtagtattatatattataatag
AAGCTGAGTTAGTTTTCAGCTACAAAAAAAAGTATAGGTTATTGTTCAGC
TATTCCGTTGAAAACacaggaaaaataaaaaaatcactgtGACTTTTTGG
GTAAAAGTTGGAATTTTTCAATCGACTGAAGCTTTTTTACGTCAAATTAC
TCCTCAAATGAGTAAGTTTGATGTATGACAACCATTTCAGTGATAATTGC
TGTTACACGTTCTTTCCGGTTTAAACGTGACATTAACTGGAAGCAATTTT
TCGTGGGTAATCgaaaccaaaatttttttaacgattgATCCGAAGTTGAT
GATTTGGGGCTGATCAACGATAACCGCAGTTATTATCCTTGCTTGATCGA
CCGTAAAAAATTGCCAATTGCCGTTTTATGTTGGTAAGGCTTCTCTTAAA
ATGTCGTACTTCTTACTTCTTTGATTTTCACTTATTCATTCCTTTCATAT
TGGCTGAGATTGTAAATCACTAGAAAGTGTCGCAGTCAAAGAACTGACGA
ATCAAACTTTTGaacaatcaacaatcaatcaaccGATAGATGTGCCACAT
TGTTATTAGCAATAGTTGTTTGTTGTGATTCACGTCGCATTCGATATCGA
ACTTCAACTTCTACAAAGCGTTCAACTTGTTTACGAAACTCTTCGAATCT
CATTTCATATTCCGCCTCTTCTTGAAGTGAATGTTTGTTTCTTCCATGTT
GTGTATCTTTACTAGAGTAGAACTTCACTCTATAAATGATTTCACCAACC
AGAGCTAAAACAACAATCACCAGTCCGGTGTACCCCATAAATATCATCAA
TCCATTATCCTGTCCTGCAAAAATCTGAGATAACGGTTGTAGAAAATACT
TTTCCGTTTTATAAGGGTCTCCAATGAAATCTGTGATAATTTCCTTTTCA
TCTTCCATTTCTTCAGAATTCATTGATAGCCCGTTTTCTTTGCATCCTAC
CACACTCTTCTTGTAATGTGCGAACATCCTCAGTGTGA
Run BLAST on NCBI

transcript from alignment at sc0000020:25197..29916+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002414 ID=TCONS_00002414|Name=TCONS_00002414|organism=Clytia hemisphaerica|type=transcript|length=4720bp|location=Sequence derived from alignment at sc0000020:25197..29916+ (Clytia hemisphaerica)
ccaccaaggaATTGTTCAAATACTTGAAAAAGTCTCTTATGTACAAggta
ttttttataaatgaatTATGTTACATTGTAGAACGAGAATCTAAtttaaa
atttaccaaaatgtcTTAAAAAAGTACATGCTTTTACGAGAATGATTTTT
AAGAGAACAAGAACAAATCTTTCAGAGCAGAAAGAGTTCAGTATTCAGGA
CTGACTTAGGAAATGCTGAATGTAAACAATCTTAAATAAACCTTGAGAGC
ATTAAAATCTCTTGTTCAAAAGTCAACACCAAGACTTGGAATATATCaag
ttatttgttttgatgaaaagtcTTCAGTTGATCATGTCCATAAACAGGGG
GGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNCCTGCCATAAAAAGTAAGTAacgaaaaaatagtttg
ataacCATACCGTTCACTTTTTTAGGATTATTCAAGATATGAAGTACTAA
AaggtttttaatttgttttaacCTTGTAATCTCTATAAATATATTCATCA
AACACAAACAATCAAGTTTTAAATACTGTATCCCAAGTTTATccttctac
atctgcaattttaAATATTGCTTGAAATTAAGTTGAAACTCAAATATgaa
atgtttagatttttctgaaTTCAATATTCCGGGTAGGGGGATACTTAGGT
AAGTAAAAGTACGGGTATGTCCTTTTTGGAAGATGGCAGTCCCTGCCTGT
AAgggtaaaaaaaaatcagaaaataaatttcagacATTCTACTCAGAATC
ACTAAAAAGCTGATTGCAACAGATCACGATTTCTTATGCAGTTCTCACTG
TTTGTATTTAATGCTAATTTACTTTGTTGAATGTCAAATCAGTGTTTTAA
CCCTCTTTTGTGACCTGTAATGGTGGTGGGAGCCCTAGACTAGTCTTTTG
GCTGCATTAATTATTCGTTTACTGATTATTTCAGCTGCAATGAACCTTAT
CAACACACATGGAACTTTATGGAAAGAATACTTAACTAAAGATGCAGAGG
TAGTTGAATAGTTTTCATCTATATTTTTGAGAGtatgaaaattattattt
taaaatttagaaaataacaTTAGATAATTCTACTTACATTTTAAGTAACA
ATGCTGTATATTGTTTTTCTAATGTGACctttcatttttcaaggaaaTAA
TACAAGCCTTGAACCATTGGAGTGATCATCTGAATCGTGATGTCAAATAT
CTTGCAATGGATACTGTCAATTACGTGTTACTCCAGGTATCAAAATTGAA
CACTAAGTCACTAAGCTAAAAGCTGAAAATGATGGAGTAGTTTTCCATAC
AATTGAGAAGGACTTTATAGTTCTAAAAGTTTAAGTGCTTCTGTTTTTCg
agtttcataaaaaaatatatccaTTATCAGAAAGTGGCCACCagcacctt
tttctattgttaaaCTTAACTTAATTTTTATgtaatattttttccatttt
tttgcagATCTCAGTTTTCATTTCGGAGCAAGGAAAAGTTGGACAAAAAC
AATATGCATCAACTTTACtggtaaaagattttcttttttgtccAAGCTGT
ATACGACCCACCTTTTAACCCAGGGGGGAATCTACCACGTTGGtgttctt
ttgtgtatatcgcagggaaaaaattttgacttttgataaaatcttattaa
gagaactattattataataattatTATGAGAGAACAGATTTGTAGGGACA
TAGGTCTGAACTATAATATACCCaaccaaattcaaattttgacacgtgat
aggtatTCACAATgtgaattcaaaaaaattacaaaaaaaaattaaaaatg
ttgacGTCATCATTAAATTGTGAacattttactcatcttcagcatgtATT
ATTACAAAAATCTTAATGGAAAATataaaaccggcaattatgttaaagaa
gcACCTTATATCTTTCAGAATATTCAAACAGAATCAAATaactttattgg
ttcgactatGAGAGACATTTTTTGTAAACCATGTATTTGGGCTCTTTTct
gacaggtggaaattttgtgattacCTCATTGCTTTTTGGCTCctctagat
aaaaaataattgagGGTGGTAAATTCTACCCCCCTTCCCAGggctacaaa
aatcaaaaaatcaaaaaagcttggggttaAAGAGAGTTAAAATACATAGA
AATTGAGCAAATTATTAAAGGTCCATCgtagcgaccgtagtacagtgtta
gagcatccggctacggttcgcaaggttgtgggttcaacccccagccgggt
cataccaaagattcccaaaatggtacttgatgcctctctgcttgatgNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNaagagaaggatcaagggtaagtggaga
aatccagggagaaagagtggcgccctcccctaccttcgggtagatagcta
tcgaaagaggagccctcgggtcgcctccgactgcggtcgcagacttactt
acttaaaggTCCGTCAAAAGAGAATCATTAGTTTGTTGTTTTGTACAAGA
ATTATTGACAATTTGAGTCGAAATTCAAGTGTTAtggcatgtttttattt
tacaatTATTTTCTTACATTACTCACAGAAACTAATGCAAAAGTTTTCGA
AGACGTTGTCCTCTTCTCAACCCTCAGCTAAAGAATTATCAATGGCAATT
AACGGATATGGGAAATTATCAGAGGTATCTCGGCTTCTTTTATGTTTTCA
CTCgataaatatgtttttaggggaaaaaatacctttattgggtctcaatt
atgaaatcttgtagtattatatattataatagAAGCTGAGTTAGTTTTCA
GCTACAAAAAAAAGTATAGGTTATTGTTCAGCTATTCCGTTGAAAACaca
ggaaaaataaaaaaatcactgtGACTTTTTGGGTAAAAGTTGGAATTTTT
CAATCGACTGAAGCTTTTTTACGTCAAATTACTCCTCAAATGAGTAAGTT
TGATGTATGACAACCATTTCAGTGATAATTGCTGTTACACGTTCTTTCCG
GTTTAAACGTGACATTAACTGGAAGCAATTTTTCGTGGGTAATCgaaacc
aaaatttttttaacgattgATCCGAAGTTGATGATTTGGGGCTGATCAAC
GATAACCGCAGTTATTATCCTTGCTTGATCGACCGTAAAAAATTGCCAAT
TGCCGTTTTATGTTGGTAAGGCTTCTCTTAAAATGTCGTACTTCTTACTT
CTTTGATTTTCACTTATTCATTCCTTTCATATTGGCTGAGATTGTAAATC
ACTAGAAAGTGTCGCAGTCAAAGAACTGACGAATCAAACTTTTGaacaat
caacaatcaatcaaccGATAGATGTGCCACATTGTTATTAGCAATAGTTG
TTTGTTGTGATTCACGTCGCATTCGATATCGAACTTCAACTTCTACAAAG
CGTTCAACTTGTTTACGAAACTCTTCGAATCTCATTTCATATTCCGCCTC
TTCTTGAAGTGAATGTTTGTTTCTTCCATGTTGTGTATCTTTACTAGAGT
AGAACTTCACTCTATAAATGATTTCACCAACCAGAGCTAAAACAACAATC
ACCAGTCCGGTGTACCCCATAAATATCATCAATCCATTATCCTGTCCTGC
AAAAATCTGAGATAACGGTTGTAGAAAATACTTTTCCGTTTTATAAGGGT
CTCCAATGAAATCTGTGATAATTTCCTTTTCATCTTCCATTTCTTCAGAA
TTCATTGATAGCCCGTTTTCTTTGCATCCTACCACACTCTTCTTGTAATG
TGCGAACATCCTCAGTGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001300XLOC_001300Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002414-exon-sc0000020-1491911889:25197..25243TCONS_00002414-exon-sc0000020-1491911889:25197..25243Clytia hemisphaericaexon
TCONS_00002414-exon-sc0000020-1510915933:25197..25243TCONS_00002414-exon-sc0000020-1510915933:25197..25243Clytia hemisphaericaexon
TCONS_00002414-exon-sc0000020-1575043694:25197..25243TCONS_00002414-exon-sc0000020-1575043694:25197..25243Clytia hemisphaericaexon
TCONS_00002414-exon-sc0000020-1491911889:26472..26499TCONS_00002414-exon-sc0000020-1491911889:26472..26499Clytia hemisphaericaexon
TCONS_00002414-exon-sc0000020-1510915933:26472..26499TCONS_00002414-exon-sc0000020-1510915933:26472..26499Clytia hemisphaericaexon
TCONS_00002414-exon-sc0000020-1575043694:26472..26499TCONS_00002414-exon-sc0000020-1575043694:26472..26499Clytia hemisphaericaexon
TCONS_00002414-exon-sc0000020-1491911889:26981..27045TCONS_00002414-exon-sc0000020-1491911889:26981..27045Clytia hemisphaericaexon
TCONS_00002414-exon-sc0000020-1510915933:26981..27045TCONS_00002414-exon-sc0000020-1510915933:26981..27045Clytia hemisphaericaexon
TCONS_00002414-exon-sc0000020-1575043694:26981..27045TCONS_00002414-exon-sc0000020-1575043694:26981..27045Clytia hemisphaericaexon
TCONS_00002414-exon-sc0000020-1491911889:27190..27282TCONS_00002414-exon-sc0000020-1491911889:27190..27282Clytia hemisphaericaexon
TCONS_00002414-exon-sc0000020-1510915933:27190..27282TCONS_00002414-exon-sc0000020-1510915933:27190..27282Clytia hemisphaericaexon
TCONS_00002414-exon-sc0000020-1575043694:27190..27282TCONS_00002414-exon-sc0000020-1575043694:27190..27282Clytia hemisphaericaexon
TCONS_00002414-exon-sc0000020-1491911889:27504..27566TCONS_00002414-exon-sc0000020-1491911889:27504..27566Clytia hemisphaericaexon
TCONS_00002414-exon-sc0000020-1510915933:27504..27566TCONS_00002414-exon-sc0000020-1510915933:27504..27566Clytia hemisphaericaexon
TCONS_00002414-exon-sc0000020-1575043694:27504..27566TCONS_00002414-exon-sc0000020-1575043694:27504..27566Clytia hemisphaericaexon
TCONS_00002414-exon-sc0000020-1491911889:28725..29916TCONS_00002414-exon-sc0000020-1491911889:28725..29916Clytia hemisphaericaexon
TCONS_00002414-exon-sc0000020-1510915933:28725..29916TCONS_00002414-exon-sc0000020-1510915933:28725..29916Clytia hemisphaericaexon
TCONS_00002414-exon-sc0000020-1575043694:28725..29916TCONS_00002414-exon-sc0000020-1575043694:28725..29916Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000020supercontigsc0000020:25197..29916 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.226082	0.338708	0.229138	0.273964	0.023017	0	0.74372	0.716607	0.611029	0.899118	0.862633	2.50093e-10	0	0	0	0.118957	0.389914	0.151504	0	0	1.69991	0.931454	0.530685	0.461854	0.243304	0.264741	0.118663	0.251289	0.0558746	0.0499291
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00002414 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top