TCONS_00002404 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002404
Unique NameTCONS_00002404
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length423

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002404 ID=TCONS_00002404|Name=TCONS_00002404|organism=Clytia hemisphaerica|type=transcript|length=423bp
ctaagaaatgaagaaggCAAACCTGTCACTGTTGACTGGCTTTTGTAaat
ttaccgaacaataaactTTTCCCCTTTTTGCACGAACCACCAAGCTATAA
TAGTCTCAAAAGTAAACATACTGTGTATAACACTCTTGcacaatgaaaac
aaaaataaatatttaccaACTCATTTTCATCTTCCTCTAAAGTGAATTCA
AAATCCTCCAAACCCTCTtcttctaaaaactttacaaaaaaacCCAAATC
ATTTGCACTAATTTGAACTGAACTTGAagccattttttaactttttgcct
CCCGCTCGCTTCgcttcttgttttgattttgtatgttCATTGGGCCGTCG
TTCGATTTTCAACATCGCTAAGAGCCGTAGGCAAAAACACTAAGGACGGC
CCGAGCGCTGCCAGACTATCTCT
Run BLAST on NCBI

transcript from alignment at sc0000019:921490..921912

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002404 ID=TCONS_00002404|Name=TCONS_00002404|organism=Clytia hemisphaerica|type=transcript|length=423bp|location=Sequence derived from alignment at sc0000019:921490..921912 (Clytia hemisphaerica)
AGAGATAGTCTGGCAGCGCTCGGGCCGTCCTTAGTGTTTTTGCCTACGGC
TCTTAGCGATGTTGAAAATCGAACGACGGCCCAATGaacatacaaaatca
aaacaagaagcGAAGCGAGCGGGaggcaaaaagttaaaaaatggctTCAA
GTTCAGTTCAAATTAGTGCAAATGATTTGGgtttttttgtaaagttttta
gaagaAGAGGGTTTGGAGGATTTTGAATTCACTTTAGAGGAAGATGAAAA
TGAGTtggtaaatatttatttttgttttcattgtgCAAGAGTGTTATACA
CAGTATGTTTACTTTTGAGACTATTATAGCTTGGTGGTTCGTGCAAAAAG
GGGAAAagtttattgttcggtaaattTACAAAAGCCAGTCAACAGTGACA
GGTTTGccttcttcatttcttag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001291XLOC_001291Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002404-exon-sc0000019-1491911889:921490..921912TCONS_00002404-exon-sc0000019-1491911889:921490..921912Clytia hemisphaericaexon
TCONS_00002404-exon-sc0000019-1510915933:921490..921912TCONS_00002404-exon-sc0000019-1510915933:921490..921912Clytia hemisphaericaexon
TCONS_00002404-exon-sc0000019-1575043694:921490..921912TCONS_00002404-exon-sc0000019-1575043694:921490..921912Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000019supercontigsc0000019:921490..921912 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.663135	0	0	1.28551	2.23569	3.00334	3.41026	3.59173	3.35287	3.28785	3.52719	4.08521	3.41799	4.80915	0.188275	0.303072	0	0.255121	0.352464	0	0.160289	0.469101	0.190084	0.172814	0.889974	3.17712	0.227323	0.242605	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00002404 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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