TCONS_00002404 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002404
Unique NameTCONS_00002404
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length423

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002404 ID=TCONS_00002404|Name=TCONS_00002404|organism=Clytia hemisphaerica|type=transcript|length=423bp
ctaagaaatgaagaaggCAAACCTGTCACTGTTGACTGGCTTTTGTAaat
ttaccgaacaataaactTTTCCCCTTTTTGCACGAACCACCAAGCTATAA
TAGTCTCAAAAGTAAACATACTGTGTATAACACTCTTGcacaatgaaaac
aaaaataaatatttaccaACTCATTTTCATCTTCCTCTAAAGTGAATTCA
AAATCCTCCAAACCCTCTtcttctaaaaactttacaaaaaaacCCAAATC
ATTTGCACTAATTTGAACTGAACTTGAagccattttttaactttttgcct
CCCGCTCGCTTCgcttcttgttttgattttgtatgttCATTGGGCCGTCG
TTCGATTTTCAACATCGCTAAGAGCCGTAGGCAAAAACACTAAGGACGGC
CCGAGCGCTGCCAGACTATCTCT
Run BLAST on NCBI

transcript from alignment at sc0000019:921490..921912

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002404 ID=TCONS_00002404|Name=TCONS_00002404|organism=Clytia hemisphaerica|type=transcript|length=423bp|location=Sequence derived from alignment at sc0000019:921490..921912 (Clytia hemisphaerica)
AGAGATAGTCTGGCAGCGCTCGGGCCGTCCTTAGTGTTTTTGCCTACGGC TCTTAGCGATGTTGAAAATCGAACGACGGCCCAATGaacatacaaaatca aaacaagaagcGAAGCGAGCGGGaggcaaaaagttaaaaaatggctTCAA GTTCAGTTCAAATTAGTGCAAATGATTTGGgtttttttgtaaagttttta gaagaAGAGGGTTTGGAGGATTTTGAATTCACTTTAGAGGAAGATGAAAA TGAGTtggtaaatatttatttttgttttcattgtgCAAGAGTGTTATACA CAGTATGTTTACTTTTGAGACTATTATAGCTTGGTGGTTCGTGCAAAAAG GGGAAAagtttattgttcggtaaattTACAAAAGCCAGTCAACAGTGACA GGTTTGccttcttcatttcttag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001291XLOC_001291Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002404-exon-sc0000019-1491911889:921490..921912TCONS_00002404-exon-sc0000019-1491911889:921490..921912Clytia hemisphaericaexon
TCONS_00002404-exon-sc0000019-1510915933:921490..921912TCONS_00002404-exon-sc0000019-1510915933:921490..921912Clytia hemisphaericaexon
TCONS_00002404-exon-sc0000019-1575043694:921490..921912TCONS_00002404-exon-sc0000019-1575043694:921490..921912Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000019supercontigsc0000019:921490..921912 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.663135 0 0 1.28551 2.23569 3.00334 3.41026 3.59173 3.35287 3.28785 3.52719 4.08521 3.41799 4.80915 0.188275 0.303072 0 0.255121 0.352464 0 0.160289 0.469101 0.190084 0.172814 0.889974 3.17712 0.227323 0.242605 0 0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00002404 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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