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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00002397 ID=TCONS_00002397|Name=TCONS_00002397|organism=Clytia hemisphaerica|type=transcript|length=1334bp
CGATTCTTGATTCGAATTTCCCTTCCAAAAgcatttaaacatttttttga
agtaTCTTCTAAAAGTGACATCAGATAAACCATATATGAAAGCATTTCCA
ACAATATTTAAATGAATGATAGTGGACAAGAGAGAATCTACCGATTCCCC
GATGCAAGTTCCAAATAGATCAGTGTCTATTAACAAGTATATTTGGTATA
CACTAAATGGTAACCAGATAATAATCACGAATAGCATCATATAGATATAC
AATCGATTTATAGCCACGCGTTTacgaaatgaaaattttcttttcgcatC
GCTTTCTCTCAAACGTTTTGAGCGATCTTTACGTCGATTTTgaactattt
tgaaaatataaatatacATGGCTAGGTTCGCGAATAATGGGAGAAGCAGA
AGTAATAATATTACAATTTCAGCCCACGCTGGCATTATGAAATCGTAAAC
TCCTGCCTCTGGATACTCTtgcatttcaaaagaaaacacaaaGATACCAA
CGCTGTGTATAAAAGTCCACACTAAAGCAATATTGATCCATTTCTTGGTA
ATTTTTAAATGCTTAAGAGGACACCGAACGGCTAAGAAACGATCCAGAGT
CATAACAAATAAAATATACAATGTCCAAGCTGCACAGAAATACCATATGG
CATTTTGAAACACAACTCCAATAGGTGGTAACATGTAGATTTCCCAATCA
TAGGTATAAAAAGATACAGCTTCAATTGGTATACAAACAACGCATGTTAG
TAAATCTGACACAGCTAACcagaatataaaaacaaaattattcgATGACC
ATAACCGAGTTGTTATGACAACGTAACATATGAATGTATTTGCTGGTATA
CCAAAAAGTGCTATCAAAGTATTTAATACACCCATTCCACCATAGTTAAA
GTATATCAAAGAATCACTTTCCCAGCAGGTTCCTAGCTCGTTAACGTATT
GACTACCGTTGGCGAGAGTTACATTTGAATGTGTTAAGTTCATGTTGATG
ACGTTGCAGTAGAGTATTTTCTGcccgaacctctataactcgaatgttcc
TTAATTCGATGAAGTTAGCTCGGCCCTTCAGTTAATACTGCTTATAAATC
CTTCTCCAATATCTTTAAATTGTTCAACTCGAACGAATCTGTGTTCCGTA
TGCGTTTTCGAGTGAAGCTGACTTTACTGTAATAATTGGATAATTATCCA
CACGAAAGTATCATAGCGTTCAGTTTTCAATATTTCGTATAGCTTTCTCT
GTACATGGTATTAAATGACCAATGTTCCCAAGTCAGTGCTTGTTTAGCAG
TTTCAATTTGTATCAGTCAACTTGAAGCAGATAG Run BLAST on NCBI protein sequence of TCONS_00002397-protein >TCONS_00002397-protein ID=TCONS_00002397-protein|Name=TCONS_00002397-protein|organism=Clytia hemisphaerica|type=polypeptide|length=331bp
MNLTHSNVTLANGSQYVNELGTCWESDSLIYFNYGGMGVLNTLIALFGIP
ANTFICYVVITTRLWSSNNFVFIFWLAVSDLLTCVVCIPIEAVSFYTYDW
EIYMLPPIGVVFQNAIWYFCAAWTLYILFVMTLDRFLAVRCPLKHLKITK
KWINIALVWTFIHSVGIFVFSFEMQEYPEAGVYDFIMPAWAEIVILLLLL
LPLFANLAMYIYIFKIVQNRRKDRSKRLRESDAKRKFSFRKRVAINRLYI
YMMLFVIIIWLPFSVYQIYLLIDTDLFGTCIGESVDSLLSTIIHLNIVGN
AFIYGLSDVTFRRYFKKMFKCFWKGNSNQES Run BLAST on NCBI transcript from alignment at sc0000019:668622..669955 Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00002397 ID=TCONS_00002397|Name=TCONS_00002397|organism=Clytia hemisphaerica|type=transcript|length=1334bp|location=Sequence derived from alignment at sc0000019:668622..669955 (Clytia hemisphaerica)
CTATCTGCTTCAAGTTGACTGATACAAATTGAAACTGCTAAACAAGCACT
GACTTGGGAACATTGGTCATTTAATACCATGTACAGAGAAAGCTATACGA
AATATTGAAAACTGAACGCTATGATACTTTCGTGTGGATAATTATCCAAT
TATTACAGTAAAGTCAGCTTCACTCGAAAACGCATACGGAACACAGATTC
GTTCGAGTTGAACAATTTAAAGATATTGGAGAAGGATTTATAAGCAGTAT
TAACTGAAGGGCCGAGCTAACTTCATCGAATTAAggaacattcgagttat
agaggttcgggCAGAAAATACTCTACTGCAACGTCATCAACATGAACTTA
ACACATTCAAATGTAACTCTCGCCAACGGTAGTCAATACGTTAACGAGCT
AGGAACCTGCTGGGAAAGTGATTCTTTGATATACTTTAACTATGGTGGAA
TGGGTGTATTAAATACTTTGATAGCACTTTTTGGTATACCAGCAAATACA
TTCATATGTTACGTTGTCATAACAACTCGGTTATGGTCATcgaataattt
tgtttttatattctgGTTAGCTGTGTCAGATTTACTAACATGCGTTGTTT
GTATACCAATTGAAGCTGTATCTTTTTATACCTATGATTGGGAAATCTAC
ATGTTACCACCTATTGGAGTTGTGTTTCAAAATGCCATATGGTATTTCTG
TGCAGCTTGGACATTGTATATTTTATTTGTTATGACTCTGGATCGTTTCT
TAGCCGTTCGGTGTCCTCTTAAGCATTTAAAAATTACCAAGAAATGGATC
AATATTGCTTTAGTGTGGACTTTTATACACAGCGTTGGTATCtttgtgtt
ttcttttgaaatgcaAGAGTATCCAGAGGCAGGAGTTTACGATTTCATAA
TGCCAGCGTGGGCTGAAATTGTAATATTATTACTTCTGCTTCTCCCATTA
TTCGCGAACCTAGCCATgtatatttatattttcaaaatagttcAAAATCG
ACGTAAAGATCGCTCAAAACGTTTGAGAGAAAGCGatgcgaaaagaaaat
tttcatttcgtAAACGCGTGGCTATAAATCGATTGTATATCTATATGATG
CTATTCGTGATTATTATCTGGTTACCATTTAGTGTATACCAAATATACTT
GTTAATAGACACTGATCTATTTGGAACTTGCATCGGGGAATCGGTAGATT
CTCTCTTGTCCACTATCATTCATTTAAATATTGTTGGAAATGCTTTCATA
TATGGTTTATCTGATGTCACTTTTAGAAGAtacttcaaaaaaatgtttaa
atgcTTTTGGAAGGGAAATTCGAATCAAGAATCG Coding sequence (CDS) from alignment at sc0000019:668622..669955 >TCONS_00002397 ID=TCONS_00002397|Name=TCONS_00002397|organism=Clytia hemisphaerica|type=CDS|length=993bp|location=Sequence derived from alignment at sc0000019:668622..669955 (Clytia hemisphaerica)
ATGAACTTAACACATTCAAATGTAACTCTCGCCAACGGTAGTCAATACGT
TAACGAGCTAGGAACCTGCTGGGAAAGTGATTCTTTGATATACTTTAACT
ATGGTGGAATGGGTGTATTAAATACTTTGATAGCACTTTTTGGTATACCA
GCAAATACATTCATATGTTACGTTGTCATAACAACTCGGTTATGGTCATc
gaataattttgtttttatattctgGTTAGCTGTGTCAGATTTACTAACAT
GCGTTGTTTGTATACCAATTGAAGCTGTATCTTTTTATACCTATGATTGG
GAAATCTACATGTTACCACCTATTGGAGTTGTGTTTCAAAATGCCATATG
GTATTTCTGTGCAGCTTGGACATTGTATATTTTATTTGTTATGACTCTGG
ATCGTTTCTTAGCCGTTCGGTGTCCTCTTAAGCATTTAAAAATTACCAAG
AAATGGATCAATATTGCTTTAGTGTGGACTTTTATACACAGCGTTGGTAT
CtttgtgttttcttttgaaatgcaAGAGTATCCAGAGGCAGGAGTTTACG
ATTTCATAATGCCAGCGTGGGCTGAAATTGTAATATTATTACTTCTGCTT
CTCCCATTATTCGCGAACCTAGCCATgtatatttatattttcaaaatagt
tcAAAATCGACGTAAAGATCGCTCAAAACGTTTGAGAGAAAGCGatgcga
aaagaaaattttcatttcgtAAACGCGTGGCTATAAATCGATTGTATATC
TATATGATGCTATTCGTGATTATTATCTGGTTACCATTTAGTGTATACCA
AATATACTTGTTAATAGACACTGATCTATTTGGAACTTGCATCGGGGAAT
CGGTAGATTCTCTCTTGTCCACTATCATTCATTTAAATATTGTTGGAAAT
GCTTTCATATATGGTTTATCTGATGTCACTTTTAGAAGAtacttcaaaaa
aatgtttaaatgcTTTTGGAAGGGAAATTCGAATCAAGAATCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00002397-exon-sc0000019-1491911889:668622..669955 | TCONS_00002397-exon-sc0000019-1491911889:668622..669955 | Clytia hemisphaerica | exon |
| TCONS_00002397-exon-sc0000019-1510915933:668622..669955 | TCONS_00002397-exon-sc0000019-1510915933:668622..669955 | Clytia hemisphaerica | exon |
| TCONS_00002397-exon-sc0000019-1575043694:668622..669955 | TCONS_00002397-exon-sc0000019-1575043694:668622..669955 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000019 | supercontig | sc0000019:668622..669955 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
The following BLAST results are available for this feature:
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