TCONS_00002397 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002397
Unique NameTCONS_00002397
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1334

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002397 ID=TCONS_00002397|Name=TCONS_00002397|organism=Clytia hemisphaerica|type=transcript|length=1334bp
CGATTCTTGATTCGAATTTCCCTTCCAAAAgcatttaaacatttttttga
agtaTCTTCTAAAAGTGACATCAGATAAACCATATATGAAAGCATTTCCA
ACAATATTTAAATGAATGATAGTGGACAAGAGAGAATCTACCGATTCCCC
GATGCAAGTTCCAAATAGATCAGTGTCTATTAACAAGTATATTTGGTATA
CACTAAATGGTAACCAGATAATAATCACGAATAGCATCATATAGATATAC
AATCGATTTATAGCCACGCGTTTacgaaatgaaaattttcttttcgcatC
GCTTTCTCTCAAACGTTTTGAGCGATCTTTACGTCGATTTTgaactattt
tgaaaatataaatatacATGGCTAGGTTCGCGAATAATGGGAGAAGCAGA
AGTAATAATATTACAATTTCAGCCCACGCTGGCATTATGAAATCGTAAAC
TCCTGCCTCTGGATACTCTtgcatttcaaaagaaaacacaaaGATACCAA
CGCTGTGTATAAAAGTCCACACTAAAGCAATATTGATCCATTTCTTGGTA
ATTTTTAAATGCTTAAGAGGACACCGAACGGCTAAGAAACGATCCAGAGT
CATAACAAATAAAATATACAATGTCCAAGCTGCACAGAAATACCATATGG
CATTTTGAAACACAACTCCAATAGGTGGTAACATGTAGATTTCCCAATCA
TAGGTATAAAAAGATACAGCTTCAATTGGTATACAAACAACGCATGTTAG
TAAATCTGACACAGCTAACcagaatataaaaacaaaattattcgATGACC
ATAACCGAGTTGTTATGACAACGTAACATATGAATGTATTTGCTGGTATA
CCAAAAAGTGCTATCAAAGTATTTAATACACCCATTCCACCATAGTTAAA
GTATATCAAAGAATCACTTTCCCAGCAGGTTCCTAGCTCGTTAACGTATT
GACTACCGTTGGCGAGAGTTACATTTGAATGTGTTAAGTTCATGTTGATG
ACGTTGCAGTAGAGTATTTTCTGcccgaacctctataactcgaatgttcc
TTAATTCGATGAAGTTAGCTCGGCCCTTCAGTTAATACTGCTTATAAATC
CTTCTCCAATATCTTTAAATTGTTCAACTCGAACGAATCTGTGTTCCGTA
TGCGTTTTCGAGTGAAGCTGACTTTACTGTAATAATTGGATAATTATCCA
CACGAAAGTATCATAGCGTTCAGTTTTCAATATTTCGTATAGCTTTCTCT
GTACATGGTATTAAATGACCAATGTTCCCAAGTCAGTGCTTGTTTAGCAG
TTTCAATTTGTATCAGTCAACTTGAAGCAGATAG
Run BLAST on NCBI

protein sequence of TCONS_00002397-protein

>TCONS_00002397-protein ID=TCONS_00002397-protein|Name=TCONS_00002397-protein|organism=Clytia hemisphaerica|type=polypeptide|length=331bp
MNLTHSNVTLANGSQYVNELGTCWESDSLIYFNYGGMGVLNTLIALFGIP
ANTFICYVVITTRLWSSNNFVFIFWLAVSDLLTCVVCIPIEAVSFYTYDW
EIYMLPPIGVVFQNAIWYFCAAWTLYILFVMTLDRFLAVRCPLKHLKITK
KWINIALVWTFIHSVGIFVFSFEMQEYPEAGVYDFIMPAWAEIVILLLLL
LPLFANLAMYIYIFKIVQNRRKDRSKRLRESDAKRKFSFRKRVAINRLYI
YMMLFVIIIWLPFSVYQIYLLIDTDLFGTCIGESVDSLLSTIIHLNIVGN
AFIYGLSDVTFRRYFKKMFKCFWKGNSNQES
Run BLAST on NCBI

transcript from alignment at sc0000019:668622..669955

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002397 ID=TCONS_00002397|Name=TCONS_00002397|organism=Clytia hemisphaerica|type=transcript|length=1334bp|location=Sequence derived from alignment at sc0000019:668622..669955 (Clytia hemisphaerica)
CTATCTGCTTCAAGTTGACTGATACAAATTGAAACTGCTAAACAAGCACT GACTTGGGAACATTGGTCATTTAATACCATGTACAGAGAAAGCTATACGA AATATTGAAAACTGAACGCTATGATACTTTCGTGTGGATAATTATCCAAT TATTACAGTAAAGTCAGCTTCACTCGAAAACGCATACGGAACACAGATTC GTTCGAGTTGAACAATTTAAAGATATTGGAGAAGGATTTATAAGCAGTAT TAACTGAAGGGCCGAGCTAACTTCATCGAATTAAggaacattcgagttat agaggttcgggCAGAAAATACTCTACTGCAACGTCATCAACATGAACTTA ACACATTCAAATGTAACTCTCGCCAACGGTAGTCAATACGTTAACGAGCT AGGAACCTGCTGGGAAAGTGATTCTTTGATATACTTTAACTATGGTGGAA TGGGTGTATTAAATACTTTGATAGCACTTTTTGGTATACCAGCAAATACA TTCATATGTTACGTTGTCATAACAACTCGGTTATGGTCATcgaataattt tgtttttatattctgGTTAGCTGTGTCAGATTTACTAACATGCGTTGTTT GTATACCAATTGAAGCTGTATCTTTTTATACCTATGATTGGGAAATCTAC ATGTTACCACCTATTGGAGTTGTGTTTCAAAATGCCATATGGTATTTCTG TGCAGCTTGGACATTGTATATTTTATTTGTTATGACTCTGGATCGTTTCT TAGCCGTTCGGTGTCCTCTTAAGCATTTAAAAATTACCAAGAAATGGATC AATATTGCTTTAGTGTGGACTTTTATACACAGCGTTGGTATCtttgtgtt ttcttttgaaatgcaAGAGTATCCAGAGGCAGGAGTTTACGATTTCATAA TGCCAGCGTGGGCTGAAATTGTAATATTATTACTTCTGCTTCTCCCATTA TTCGCGAACCTAGCCATgtatatttatattttcaaaatagttcAAAATCG ACGTAAAGATCGCTCAAAACGTTTGAGAGAAAGCGatgcgaaaagaaaat tttcatttcgtAAACGCGTGGCTATAAATCGATTGTATATCTATATGATG CTATTCGTGATTATTATCTGGTTACCATTTAGTGTATACCAAATATACTT GTTAATAGACACTGATCTATTTGGAACTTGCATCGGGGAATCGGTAGATT CTCTCTTGTCCACTATCATTCATTTAAATATTGTTGGAAATGCTTTCATA TATGGTTTATCTGATGTCACTTTTAGAAGAtacttcaaaaaaatgtttaa atgcTTTTGGAAGGGAAATTCGAATCAAGAATCG

Coding sequence (CDS) from alignment at sc0000019:668622..669955

>TCONS_00002397 ID=TCONS_00002397|Name=TCONS_00002397|organism=Clytia hemisphaerica|type=CDS|length=993bp|location=Sequence derived from alignment at sc0000019:668622..669955 (Clytia hemisphaerica)
ATGAACTTAACACATTCAAATGTAACTCTCGCCAACGGTAGTCAATACGT
TAACGAGCTAGGAACCTGCTGGGAAAGTGATTCTTTGATATACTTTAACT
ATGGTGGAATGGGTGTATTAAATACTTTGATAGCACTTTTTGGTATACCA
GCAAATACATTCATATGTTACGTTGTCATAACAACTCGGTTATGGTCATc
gaataattttgtttttatattctgGTTAGCTGTGTCAGATTTACTAACAT
GCGTTGTTTGTATACCAATTGAAGCTGTATCTTTTTATACCTATGATTGG
GAAATCTACATGTTACCACCTATTGGAGTTGTGTTTCAAAATGCCATATG
GTATTTCTGTGCAGCTTGGACATTGTATATTTTATTTGTTATGACTCTGG
ATCGTTTCTTAGCCGTTCGGTGTCCTCTTAAGCATTTAAAAATTACCAAG
AAATGGATCAATATTGCTTTAGTGTGGACTTTTATACACAGCGTTGGTAT
CtttgtgttttcttttgaaatgcaAGAGTATCCAGAGGCAGGAGTTTACG
ATTTCATAATGCCAGCGTGGGCTGAAATTGTAATATTATTACTTCTGCTT
CTCCCATTATTCGCGAACCTAGCCATgtatatttatattttcaaaatagt
tcAAAATCGACGTAAAGATCGCTCAAAACGTTTGAGAGAAAGCGatgcga
aaagaaaattttcatttcgtAAACGCGTGGCTATAAATCGATTGTATATC
TATATGATGCTATTCGTGATTATTATCTGGTTACCATTTAGTGTATACCA
AATATACTTGTTAATAGACACTGATCTATTTGGAACTTGCATCGGGGAAT
CGGTAGATTCTCTCTTGTCCACTATCATTCATTTAAATATTGTTGGAAAT
GCTTTCATATATGGTTTATCTGATGTCACTTTTAGAAGAtacttcaaaaa
aatgtttaaatgcTTTTGGAAGGGAAATTCGAATCAAGAATCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001284XLOC_001284Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002397-exon-sc0000019-1491911889:668622..669955TCONS_00002397-exon-sc0000019-1491911889:668622..669955Clytia hemisphaericaexon
TCONS_00002397-exon-sc0000019-1510915933:668622..669955TCONS_00002397-exon-sc0000019-1510915933:668622..669955Clytia hemisphaericaexon
TCONS_00002397-exon-sc0000019-1575043694:668622..669955TCONS_00002397-exon-sc0000019-1575043694:668622..669955Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002397-proteinTCONS_00002397-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000019supercontigsc0000019:668622..669955 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0 0 0 0 0 0 0 0 0.0329169 0 0 0 0.0217811 0.0179071 0 0.165716 0.461032 0 0.105239 0.274415 0.803101 0.361583 0.230112 0.440161 0.483487 0.0864836 0.0461488 0 0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000276GPCR_Rhodpsn
IPR017452GPCR_Rhodpsn_7TM
Vocabulary: Biological Process
TermDefinition
GO:0007186G-protein coupled receptor signaling pathway
Vocabulary: Molecular Function
TermDefinition
GO:0004930G-protein coupled receptor activity
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007186 G-protein coupled receptor signaling pathway
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0004930 G-protein coupled receptor activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00002397 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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