TCONS_00002394 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002394
Unique NameTCONS_00002394
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length526

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002394 ID=TCONS_00002394|Name=TCONS_00002394|organism=Clytia hemisphaerica|type=transcript|length=526bp
TCAgctttatttgtaaaaatattttccttgctGGATAATTTAGAtaccaa
aataattgaaatgtgTTGCGTTAGAATACAAACGAAGCTGGTAAAGCTAG
TTTATCATTATTCTTGGGCTAAAGTTTCTAAGAAACAATACCTCTTCACT
AGGGACAGCGaggttgaaaataaaaccttgGAGGACAAAAAAGCAACAAC
AAATGTcaaggaaagaaaagaaaaaaagaaacgatgataattcatgatat
caatgccaGGAGGTCATAAATATCATGAAGGCTTTCTTGTAAGAACTTTA
TGAGTTCTAGACAACAAAAAATGAGAGGTTAAAAAAACTATGCATTTCCA
TCCAACCCAACAAATAATagtgaaataaaaattaaatattcttcCACAGT
CAACAGTGTATATGTATATTTGAATTACAGATTGTCATTgttagtttgta
tttttttcagtgCATATGACTTCACTATTTCTCTGAATATAAATCACAGG
TGACTCTTCTTTGCAACTGCTgcaaa
Run BLAST on NCBI

transcript from alignment at sc0000019:616455..616980

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002394 ID=TCONS_00002394|Name=TCONS_00002394|organism=Clytia hemisphaerica|type=transcript|length=526bp|location=Sequence derived from alignment at sc0000019:616455..616980 (Clytia hemisphaerica)
tttgcAGCAGTTGCAAAGAAGAGTCACCTGTGATTTATATTCAGAGAAAT
AGTGAAGTCATATGcactgaaaaaaatacaaactaacAATGACAATCTGT
AATTCAAATATACATATACACTGTTGACTGTGgaagaatatttaattttt
atttcactATTATTTGTTGGGTTGGATGGAAATGCATAGTTTTTTTAACC
TCTCATTTTTTGTTGTCTAGAACTCATAAAGTTCTTACAAGAAAGCCTTC
ATGATATTTATGACCTCCtggcattgatatcatgaattatcatcgtttct
ttttttcttttctttccttgACATTTGTTGTTGCTTTTTTGTCCTCcaag
gttttattttcaacctCGCTGTCCCTAGTGAAGAGGTATTGTTTCTTAGA
AACTTTAGCCCAAGAATAATGATAAACTAGCTTTACCAGCTTCGTTTGTA
TTCTAACGCAAcacatttcaattattttggtaTCTAAATTATCCagcaag
gaaaatatttttacaaataaagcTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001281XLOC_001281Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002394-exon-sc0000019-1491911889:616455..616980TCONS_00002394-exon-sc0000019-1491911889:616455..616980Clytia hemisphaericaexon
TCONS_00002394-exon-sc0000019-1510915933:616455..616980TCONS_00002394-exon-sc0000019-1510915933:616455..616980Clytia hemisphaericaexon
TCONS_00002394-exon-sc0000019-1575043694:616455..616980TCONS_00002394-exon-sc0000019-1575043694:616455..616980Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000019supercontigsc0000019:616455..616980 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.09056	0.899809	0.380155	0.544913	0.45278	0.477057	0.606353	0	0.60742	0.184164	0.316769	0.574078	0.521657	0.558768	2.30376	1.4011	0.129295	0.809762	1.07073	0.849187	1.77226	2.04153	1.07596	2.67172	0	0.10724	3.34476	1.49949	4.73322	3.41981
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00002394 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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