TCONS_00002374 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002374
Unique NameTCONS_00002374
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length545

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002374 ID=TCONS_00002374|Name=TCONS_00002374|organism=Clytia hemisphaerica|type=transcript|length=545bp
GTGAGAAGTACATCTTTGTGGTATAGTAGCAATCCGAAAGATAATACGAT
AACGATTGCAAAAACAATCCAGAACCAACTTGCCAAGCATTTTGAACTAT
CAACACATTTGTTATGACTAAATATGCTTATAAAGTCTCCAGGTCTACAC
CCTCCACACAACCGCCCTTGACGCCTGTTCGCACATGTGTTATATGAATG
ACATCTTTTTAAACGATCACAACAATAAAAGGGTGGACATATCTTAAATT
TCACATATCCAGAAGAGTTTGAGTAACCCCAATAGTTTCCTCTACTTTTG
ATACCGTTAATACAAGAAGCTTGAAAGGGGCATTGATAACATGTCGAATT
ATGAACGTGTACTTTTCCGTTGCTATCGTAATTGACGTATGATTTATTTA
CAGCGTTGTACGATGTTCCGTCACATTGGACACAGTTCATTCGAATACGG
TCATTTGCATCAGTAGACTCAAAAGTCAAATTTAAGTCACCCACTATGTA
GTAATTTGGCTCATAGCATGAGAAATTTGCATCAATAAAATGTGT
Run BLAST on NCBI

protein sequence of TCONS_00002374-protein

>TCONS_00002374-protein ID=TCONS_00002374-protein|Name=TCONS_00002374-protein|organism=Clytia hemisphaerica|type=polypeptide|length=181bp
THFIDANFSCYEPNYYIVGDLNLTFESTDANDRIRMNCVQCDGTSYNAVN
KSYVNYDSNGKVHVHNSTCYQCPFQASCINGIKSRGNYWGYSNSSGYVKF
KICPPFYCCDRLKRCHSYNTCANRRQGRLCGGCRPGDFISIFSHNKCVDS
SKCLASWFWIVFAIVIVLSFGLLLYHKDVLL
Run BLAST on NCBI

transcript from alignment at sc0000019:362306..362850

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002374 ID=TCONS_00002374|Name=TCONS_00002374|organism=Clytia hemisphaerica|type=transcript|length=545bp|location=Sequence derived from alignment at sc0000019:362306..362850 (Clytia hemisphaerica)
ACACATTTTATTGATGCAAATTTCTCATGCTATGAGCCAAATTACTACAT
AGTGGGTGACTTAAATTTGACTTTTGAGTCTACTGATGCAAATGACCGTA
TTCGAATGAACTGTGTCCAATGTGACGGAACATCGTACAACGCTGTAAAT
AAATCATACGTCAATTACGATAGCAACGGAAAAGTACACGTTCATAATTC
GACATGTTATCAATGCCCCTTTCAAGCTTCTTGTATTAACGGTATCAAAA
GTAGAGGAAACTATTGGGGTTACTCAAACTCTTCTGGATATGTGAAATTT
AAGATATGTCCACCCTTTTATTGTTGTGATCGTTTAAAAAGATGTCATTC
ATATAACACATGTGCGAACAGGCGTCAAGGGCGGTTGTGTGGAGGGTGTA
GACCTGGAGACTTTATAAGCATATTTAGTCATAACAAATGTGTTGATAGT
TCAAAATGCTTGGCAAGTTGGTTCTGGATTGTTTTTGCAATCGTTATCGT
ATTATCTTTCGGATTGCTACTATACCACAAAGATGTACTTCTCAC

Coding sequence (CDS) from alignment at sc0000019:362306..362850

>TCONS_00002374 ID=TCONS_00002374|Name=TCONS_00002374|organism=Clytia hemisphaerica|type=CDS|length=543bp|location=Sequence derived from alignment at sc0000019:362306..362850 (Clytia hemisphaerica)
ACACATTTTATTGATGCAAATTTCTCATGCTATGAGCCAAATTACTACAT
AGTGGGTGACTTAAATTTGACTTTTGAGTCTACTGATGCAAATGACCGTA
TTCGAATGAACTGTGTCCAATGTGACGGAACATCGTACAACGCTGTAAAT
AAATCATACGTCAATTACGATAGCAACGGAAAAGTACACGTTCATAATTC
GACATGTTATCAATGCCCCTTTCAAGCTTCTTGTATTAACGGTATCAAAA
GTAGAGGAAACTATTGGGGTTACTCAAACTCTTCTGGATATGTGAAATTT
AAGATATGTCCACCCTTTTATTGTTGTGATCGTTTAAAAAGATGTCATTC
ATATAACACATGTGCGAACAGGCGTCAAGGGCGGTTGTGTGGAGGGTGTA
GACCTGGAGACTTTATAAGCATATTTAGTCATAACAAATGTGTTGATAGT
TCAAAATGCTTGGCAAGTTGGTTCTGGATTGTTTTTGCAATCGTTATCGT
ATTATCTTTCGGATTGCTACTATACCACAAAGATGTACTTCTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001261XLOC_001261Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002374-exon-sc0000019-1491911889:362306..362850TCONS_00002374-exon-sc0000019-1491911889:362306..362850Clytia hemisphaericaexon
TCONS_00002374-exon-sc0000019-1510915933:362306..362850TCONS_00002374-exon-sc0000019-1510915933:362306..362850Clytia hemisphaericaexon
TCONS_00002374-exon-sc0000019-1575043694:362306..362850TCONS_00002374-exon-sc0000019-1575043694:362306..362850Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002374-proteinTCONS_00002374-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000019supercontigsc0000019:362306..362850 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.316766	0.55183	0.214339	0.389127	0	0	0.156725	0	0.401884	0	0.502394	0.430593	0.383921	0.323237	0.706411	0.485759	0.26838	0.535002	0.476107	0.624904	0.425111	0.826993	0.803273	1.72776	0	0	0.912283	0.673722	0.725567	1.23609
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00002374 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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