TCONS_00002371 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002371
Unique NameTCONS_00002371
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length652

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002371 ID=TCONS_00002371|Name=TCONS_00002371|organism=Clytia hemisphaerica|type=transcript|length=652bp
CATTTATAATACGATGAAATATAGAATGAAGCGAAGGTTTAAGTTTGAAT
TCAAAAGTTCAATTTCGACCTGCGCGCCCGCGCGACAATCGATCCTTTCG
CTCGGCCTTTTCATCACCATATTTAATCTCCCATTTGAGATCAGTGAGTA
GCATGTCATAATCAACAGGTTTTGGACgagttttgaaacaattttcttCC
GAAACCTTAGCAAGGTTTAAAGATATCATTGTATCTTCATCCCGGCGTTG
GAAGAGCATTTCTCCTTTAAAATCAAGTAAGCCATATTTCCTGGCACGCA
GCAAAGCTCCGACCAACTTATTGGACACTTGAGTGTACAAACGAAAGAGC
TCGCCAAAGGTGATTCCAATACTATTGTTTCCAATCTTCTTGCCATGTTC
TTTGATCATAAAGACAAGTAGTTTCATCTCGTGCATCATAAGATGACCGG
CCGCGCGACCGCGCACTTCCGTATCAGTGCCGTAGATAGGGTTTCCATAC
TCTTCATGACTTTTAGAGAGAGCCTCTCGATGGGATGCGCCTTCCCACTT
GGAAAATGGATTGATTAGTtgcttttctttgtgtttttgataaattgttt
cCCATGAATTGATTTTTCCGCTTACAGCCATTCAATTAAAACAACAAcga
aa
Run BLAST on NCBI

protein sequence of TCONS_00002371-protein

>TCONS_00002371-protein ID=TCONS_00002371-protein|Name=TCONS_00002371-protein|organism=Clytia hemisphaerica|type=polypeptide|length=190bp
MAVSGKINSWETIYQKHKEKQLINPFSKWEGASHREALSKSHEEYGNPIY
GTDTEVRGRAAGHLMMHEMKLLVFMIKEHGKKIGNNSIGITFGELFRLYT
QVSNKLVGALLRARKYGLLDFKGEMLFQRRDEDTMISLNLAKVSEENCFK
TRPKPVDYDMLLTDLKWEIKYGDEKAERKDRLSRGRAGRN
Run BLAST on NCBI

transcript from alignment at sc0000019:253317..253968

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002371 ID=TCONS_00002371|Name=TCONS_00002371|organism=Clytia hemisphaerica|type=transcript|length=652bp|location=Sequence derived from alignment at sc0000019:253317..253968 (Clytia hemisphaerica)
tttcgTTGTTGTTTTAATTGAATGGCTGTAAGCGGAAAAATCAATTCATG
GgaaacaatttatcaaaaacacaaagaaaagcaACTAATCAATCCATTTT
CCAAGTGGGAAGGCGCATCCCATCGAGAGGCTCTCTCTAAAAGTCATGAA
GAGTATGGAAACCCTATCTACGGCACTGATACGGAAGTGCGCGGTCGCGC
GGCCGGTCATCTTATGATGCACGAGATGAAACTACTTGTCTTTATGATCA
AAGAACATGGCAAGAAGATTGGAAACAATAGTATTGGAATCACCTTTGGC
GAGCTCTTTCGTTTGTACACTCAAGTGTCCAATAAGTTGGTCGGAGCTTT
GCTGCGTGCCAGGAAATATGGCTTACTTGATTTTAAAGGAGAAATGCTCT
TCCAACGCCGGGATGAAGATACAATGATATCTTTAAACCTTGCTAAGGTT
TCGGaagaaaattgtttcaaaactcGTCCAAAACCTGTTGATTATGACAT
GCTACTCACTGATCTCAAATGGGAGATTAAATATGGTGATGAAAAGGCCG
AGCGAAAGGATCGATTGTCGCGCGGGCGCGCAGGTCGAAATTGAACTTTT
GAATTCAAACTTAAACCTTCGCTTCATTCTATATTTCATCGTATTATAAA
TG

Coding sequence (CDS) from alignment at sc0000019:253317..253968

>TCONS_00002371 ID=TCONS_00002371|Name=TCONS_00002371|organism=Clytia hemisphaerica|type=CDS|length=573bp|location=Sequence derived from alignment at sc0000019:253317..253968 (Clytia hemisphaerica)
ATGGCTGTAAGCGGAAAAATCAATTCATGGgaaacaatttatcaaaaaca
caaagaaaagcaACTAATCAATCCATTTTCCAAGTGGGAAGGCGCATCCC
ATCGAGAGGCTCTCTCTAAAAGTCATGAAGAGTATGGAAACCCTATCTAC
GGCACTGATACGGAAGTGCGCGGTCGCGCGGCCGGTCATCTTATGATGCA
CGAGATGAAACTACTTGTCTTTATGATCAAAGAACATGGCAAGAAGATTG
GAAACAATAGTATTGGAATCACCTTTGGCGAGCTCTTTCGTTTGTACACT
CAAGTGTCCAATAAGTTGGTCGGAGCTTTGCTGCGTGCCAGGAAATATGG
CTTACTTGATTTTAAAGGAGAAATGCTCTTCCAACGCCGGGATGAAGATA
CAATGATATCTTTAAACCTTGCTAAGGTTTCGGaagaaaattgtttcaaa
actcGTCCAAAACCTGTTGATTATGACATGCTACTCACTGATCTCAAATG
GGAGATTAAATATGGTGATGAAAAGGCCGAGCGAAAGGATCGATTGTCGC
GCGGGCGCGCAGGTCGAAATTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001258XLOC_001258Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002371-proteinTCONS_00002371-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002371-exon-sc0000019-1491911889:253317..253968TCONS_00002371-exon-sc0000019-1491911889:253317..253968Clytia hemisphaericaexon
TCONS_00002371-exon-sc0000019-1510915933:253317..253968TCONS_00002371-exon-sc0000019-1510915933:253317..253968Clytia hemisphaericaexon
TCONS_00002371-exon-sc0000019-1575043694:253317..253968TCONS_00002371-exon-sc0000019-1575043694:253317..253968Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000019supercontigsc0000019:253317..253968 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.480511	1.24953	0.906766	0.532277	2.69998	1.70685	0.823697	0.385568	0.337431	0.919519	0	0.320018	40.0531	20.9637	1.2733	0.341612	67.815	123.796	108.203	200.085	45.0648	52.7998	25.8026	25.7123	18.8305	16.8825	5.05138	2.92988	1.33332	0.543379
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR027817Costars_dom
Blast
[Close]
BLAST of TCONS_00002371 vs. Swiss-Prot (Human)
Match: ABRA (Actin-binding Rho-activating protein OS=Homo sapiens GN=ABRA PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 2.257e-22
Identity = 55/133 (41.35%), Postives = 81/133 (60.90%), Query Frame = -1 
Query:  218 WETIYQKHKEKQLINPFSK---WEGA-SHREALSKSHEEYGNPIYGTDTEVRGRAAGHLMMHEMKLLVFMIKEHGKKIGNNSIGITFGELFRLYTQVSNKLVGALLRARKYGLLDFKGEMLFQRRDEDTMISL 604
            W+    +H + Q +NPFS+   +E A S R  L K  E YG P  GT T  R + A   +  EM  + F+I    +   +  I +TFG+LF  Y ++S+K+VG L+RARK+GL+DF+GEML+Q RD+  +I+L
Sbjct:  249 WQQWADEHIQSQKLNPFSEEFDYELAMSTR--LHKGDEGYGRPKEGTKTAERAKRAEEHIYREMMDMCFIICTMARHRRDGKIQVTFGDLFDRYVRISDKVVGILMRARKHGLVDFEGEMLWQGRDDHVVITL 379
The following BLAST results are available for this feature:
BLAST of TCONS_00002371 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ABRA2.257e-2241.35Actin-binding Rho-activating protein OS=Homo sapie... [more]
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