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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00002368 ID=TCONS_00002368|Name=TCONS_00002368|organism=Clytia hemisphaerica|type=transcript|length=1246bp
gaaaaatttgattaaaatcgAGAATTTAGAGACTTGTTTCGACGAGGAAA
ATGGATTGGAACGTGTTACGTCTTTCGTTATCCATCATCGCATCACTGTT
GCATACTTTCGGTTTTATTGTTTTATGGAACGTCAAACAAACAAACCCAT
ATCTCGTCATGCAACGTTTTTATTTGTTGAATTTGAGTGTAGCTGAAAAC
GTACACGCCATTTTCTTGGCACATTATTATGGCTTCAAATTAGTTGGAAA
TGAACGTTGGATGAATTTTATGATGATTTGCTCTGGTGGTGGTTCTTTTA
TTTGGTTCTTATTAATCCTTATTGTTTTGACCGTGGACCGATTTTTTACC
GTGTATCTAAATCTAAGATACCTTAAACATAAAACGAACCGTCGAACCAA
AATAGTGCTTTTAATATGCTTTTTAATCTCTCTTATTCTCAACGTCATTT
TCTTAATCACGTTACCAAACCTTGACAGAACATTGACTGTCTTTGCAATG
TATATATGGTTCCCTTTAGAAGTCTTCTTCATATTCTTCTTGGTTATAAT
ATACGCGTACATCATATGGCGAGTATCTTACACGCGAACAACAGTTTTAC
CAAAGAACAAGGAATCGCCAGTGGAAAATCATACTGAAGATTTCCCATCC
ACTCCCAATTCCAATCGAGTCAAACCTGAAGTAACAGTCAATAGTAATGT
CTCCCAGGCTAATTTACCGAACAGGGAATCCCCATTATCAATCACGGAAT
TACCCTCAACAATCTGTTATAATCAAGACATCCCCTTATCTCcagcaaaa
ccaaaaacatCGAAACAGGTTCAAAAAGTGGCTAAGAAACATATGAAGCA
GTATAAACGCAGCCGAACGGATATGTCTAAACACaagaaagctattttag
taCCGGCTTGGTTGGTAACAACTTTTGTAGTCTTTATTGCGATACCAGAT
GTAGGTTACTTCATTACagtgactttgatgaaaatGCCACGACCGTTTGC
GTTGAAAGTTGCAGCGGCTTTTTATCCAGTGGGGATCATTTGTGATGCAA
TCATTTACATTTTCTTCGTAAAAGAAGTTCGAACGTATTTATTGAAGAAA
ATTAAATGTTGCTGAAATCATACTCGATTAAAATGAGTAGTACAgtttga
ctctctctaattcgatcttcatgcGACCATAATTGTTTttcgaattagaa
aaaaattcgaattatattgagtaatttaaaccaatttccagctgag Run BLAST on NCBI protein sequence of TCONS_00002368-protein >TCONS_00002368-protein ID=TCONS_00002368-protein|Name=TCONS_00002368-protein|organism=Clytia hemisphaerica|type=polypeptide|length=354bp
MDWNVLRLSLSIIASLLHTFGFIVLWNVKQTNPYLVMQRFYLLNLSVAEN
VHAIFLAHYYGFKLVGNERWMNFMMICSGGGSFIWFLLILIVLTVDRFFT
VYLNLRYLKHKTNRRTKIVLLICFLISLILNVIFLITLPNLDRTLTVFAM
YIWFPLEVFFIFFLVIIYAYIIWRVSYTRTTVLPKNKESPVENHTEDFPS
TPNSNRVKPEVTVNSNVSQANLPNRESPLSITELPSTICYNQDIPLSPAK
PKTSKQVQKVAKKHMKQYKRSRTDMSKHKKAILVPAWLVTTFVVFIAIPD
VGYFITVTLMKMPRPFALKVAAAFYPVGIICDAIIYIFFVKEVRTYLLKK
IKCC Run BLAST on NCBI transcript from alignment at sc0000019:182891..184136 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00002368 ID=TCONS_00002368|Name=TCONS_00002368|organism=Clytia hemisphaerica|type=transcript|length=1246bp|location=Sequence derived from alignment at sc0000019:182891..184136 (Clytia hemisphaerica)
ctcagctggaaattggtttaaattactcaatataattcgaatttttttct
aattcgaaAAACAATTATGGTCgcatgaagatcgaattagagagagtcaa
acTGTACTACTCATTTTAATCGAGTATGATTTCAGCAACATTTAATTTTC
TTCAATAAATACGTTCGAACTTCTTTTACGAAGAAAATGTAAATGATTGC
ATCACAAATGATCCCCACTGGATAAAAAGCCGCTGCAACTTTCAACGCAA
ACGGTCGTGGCattttcatcaaagtcactGTAATGAAGTAACCTACATCT
GGTATCGCAATAAAGACTACAAAAGTTGTTACCAACCAAGCCGGtactaa
aatagctttcttGTGTTTAGACATATCCGTTCGGCTGCGTTTATACTGCT
TCATATGTTTCTTAGCCACTTTTTGAACCTGTTTCGatgtttttggtttt
gctgGAGATAAGGGGATGTCTTGATTATAACAGATTGTTGAGGGTAATTC
CGTGATTGATAATGGGGATTCCCTGTTCGGTAAATTAGCCTGGGAGACAT
TACTATTGACTGTTACTTCAGGTTTGACTCGATTGGAATTGGGAGTGGAT
GGGAAATCTTCAGTATGATTTTCCACTGGCGATTCCTTGTTCTTTGGTAA
AACTGTTGTTCGCGTGTAAGATACTCGCCATATGATGTACGCGTATATTA
TAACCAAGAAGAATATGAAGAAGACTTCTAAAGGGAACCATATATACATT
GCAAAGACAGTCAATGTTCTGTCAAGGTTTGGTAACGTGATTAAGAAAAT
GACGTTGAGAATAAGAGAGATTAAAAAGCATATTAAAAGCACTATTTTGG
TTCGACGGTTCGTTTTATGTTTAAGGTATCTTAGATTTAGATACACGGTA
AAAAATCGGTCCACGGTCAAAACAATAAGGATTAATAAGAACCAAATAAA
AGAACCACCACCAGAGCAAATCATCATAAAATTCATCCAACGTTCATTTC
CAACTAATTTGAAGCCATAATAATGTGCCAAGAAAATGGCGTGTACGTTT
TCAGCTACACTCAAATTCAACAAATAAAAACGTTGCATGACGAGATATGG
GTTTGTTTGTTTGACGTTCCATAAAACAATAAAACCGAAAGTATGCAACA
GTGATGCGATGATGGATAACGAAAGACGTAACACGTTCCAATCCATTTTC
CTCGTCGAAACAAGTCTCTAAATTCTcgattttaatcaaatttttc Coding sequence (CDS) from alignment at sc0000019:182891..184136 >TCONS_00002368 ID=TCONS_00002368|Name=TCONS_00002368|organism=Clytia hemisphaerica|type=CDS|length=1065bp|location=Sequence derived from alignment at sc0000019:182891..184136 (Clytia hemisphaerica)
TCAGCAACATTTAATTTTCTTCAATAAATACGTTCGAACTTCTTTTACGA
AGAAAATGTAAATGATTGCATCACAAATGATCCCCACTGGATAAAAAGCC
GCTGCAACTTTCAACGCAAACGGTCGTGGCattttcatcaaagtcactGT
AATGAAGTAACCTACATCTGGTATCGCAATAAAGACTACAAAAGTTGTTA
CCAACCAAGCCGGtactaaaatagctttcttGTGTTTAGACATATCCGTT
CGGCTGCGTTTATACTGCTTCATATGTTTCTTAGCCACTTTTTGAACCTG
TTTCGatgtttttggttttgctgGAGATAAGGGGATGTCTTGATTATAAC
AGATTGTTGAGGGTAATTCCGTGATTGATAATGGGGATTCCCTGTTCGGT
AAATTAGCCTGGGAGACATTACTATTGACTGTTACTTCAGGTTTGACTCG
ATTGGAATTGGGAGTGGATGGGAAATCTTCAGTATGATTTTCCACTGGCG
ATTCCTTGTTCTTTGGTAAAACTGTTGTTCGCGTGTAAGATACTCGCCAT
ATGATGTACGCGTATATTATAACCAAGAAGAATATGAAGAAGACTTCTAA
AGGGAACCATATATACATTGCAAAGACAGTCAATGTTCTGTCAAGGTTTG
GTAACGTGATTAAGAAAATGACGTTGAGAATAAGAGAGATTAAAAAGCAT
ATTAAAAGCACTATTTTGGTTCGACGGTTCGTTTTATGTTTAAGGTATCT
TAGATTTAGATACACGGTAAAAAATCGGTCCACGGTCAAAACAATAAGGA
TTAATAAGAACCAAATAAAAGAACCACCACCAGAGCAAATCATCATAAAA
TTCATCCAACGTTCATTTCCAACTAATTTGAAGCCATAATAATGTGCCAA
GAAAATGGCGTGTACGTTTTCAGCTACACTCAAATTCAACAAATAAAAAC
GTTGCATGACGAGATATGGGTTTGTTTGTTTGACGTTCCATAAAACAATA
AAACCGAAAGTATGCAACAGTGATGCGATGATGGATAACGAAAGACGTAA
CACGTTCCAATCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00002368-exon-sc0000019-1491911889:182891..184136 | TCONS_00002368-exon-sc0000019-1491911889:182891..184136 | Clytia hemisphaerica | exon |
| TCONS_00002368-exon-sc0000019-1510915933:182891..184136 | TCONS_00002368-exon-sc0000019-1510915933:182891..184136 | Clytia hemisphaerica | exon |
| TCONS_00002368-exon-sc0000019-1575043694:182891..184136 | TCONS_00002368-exon-sc0000019-1575043694:182891..184136 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000019 | supercontig | sc0000019:182891..184136 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000276 | GPCR_Rhodpsn |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
The following BLAST results are available for this feature:
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