TCONS_00002365 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002365
Unique NameTCONS_00002365
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length341

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002365 ID=TCONS_00002365|Name=TCONS_00002365|organism=Clytia hemisphaerica|type=transcript|length=341bp
NNAAAAGAATGACTTAATTTCGACGTACAATTAGTATCGAGGAACTGAGG
TTTTCGTGACGGAGGAGTCGCAACCGTAGTTTTCGgggacaggagaaaat
ttctatttttacaccatgttttggactgatttttttatgaaaactaaGTA
CATCAAACGCTACTTTTTATGGATATCTTTGCCTAAGTTCTCAGTTAAGT
TCATTGGGGGAAATGAGGCATTACGCATGCCATCACCTTCGTTAAAGTTT
CCAGCTTCGTAAAGGAAAACCTAAATAataatgttatattttcttcaaaa
acaccaaaaatcctgtttttcaatgaaaacgccaacggagg
Run BLAST on NCBI

transcript from alignment at sc0000019:109575..109915

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002365 ID=TCONS_00002365|Name=TCONS_00002365|organism=Clytia hemisphaerica|type=transcript|length=341bp|location=Sequence derived from alignment at sc0000019:109575..109915 (Clytia hemisphaerica)
cctccgttggcgttttcattgaaaaacaggatttttggtgtttttgaaga
aaatataacattatTATTTAGGTTTTCCTTTACGAAGCTGGAAACTTTAA
CGAAGGTGATGGCATGCGTAATGCCTCATTTCCCCCAATGAACTTAACTG
AGAACTTAGGCAAAGATATCCATAAAAAGTAGCGTTTGATGTACttagtt
ttcataaaaaaatcagtccaaaacatggtgtaaaaatagaaattttctcc
tgtcccCGAAAACTACGGTTGCGACTCCTCCGTCACGAAAACCTCAGTTC
CTCGATACTAATTGTACGTCGAAATTAAGTCATTCTTTTNN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001252XLOC_001252Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002365-exon-sc0000019-1491911889:109575..109915TCONS_00002365-exon-sc0000019-1491911889:109575..109915Clytia hemisphaericaexon
TCONS_00002365-exon-sc0000019-1510915933:109575..109915TCONS_00002365-exon-sc0000019-1510915933:109575..109915Clytia hemisphaericaexon
TCONS_00002365-exon-sc0000019-1575043694:109575..109915TCONS_00002365-exon-sc0000019-1575043694:109575..109915Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000019supercontigsc0000019:109575..109915 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.262092	0	0	0.36245	0.553075	0.419497	0.777921	0.872474	0	2.84436	0.649225	0.269505	0.371267	2.02473	0.912914	0.241853	0	0.571415	0.674523	0.876191	0.861209	0	0.966303	0.728065	0.979564	0	0.825395	1.53349	1.93587
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00002365 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top