|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00002359 ID=TCONS_00002359|Name=TCONS_00002359|organism=Clytia hemisphaerica|type=transcript|length=861bp
AGAGCACTTTTAAGTtaaaaattatgtttgaaatttcaatcTGCGAATTT
TTGTTAGATTGATTTTCTGTTTAAGTCCTAGAGTTTTATGCTCTCTTTTG
ACATCCATGATTTCTTTCATAATTTTCTGAATATCGTAATCAATTTGTGT
TAGCTCTTTGCTTTTCTTTCGAACAAACCACTTCTCAGATACCATTttgt
ttctcaatttttcacaCTTCATGAAAGCCTCGTCAATCTTTTTCTCAATT
GCCAGAATCTGAGATCTTTTTGTGTCACACATTTTAATGTCATTGCACAA
ACTATTTCTTTCTACAGGCTGCAAAGTGCTTCCTTTCCTCTGTCGTGCTT
TATGATATTGAGAGTCTATGCGCTCGAGCAGAGTTTCTTGTTCTTGAGTC
TCATCCTTCAAAGATTGCTTCAAAGAATCCATGTTCTCCTCTTCAATCTG
TATCATTTTTAAATCAGACTCATCTTGCAGGCTACGTTCTCTCAAGTACC
CGATCACTTCATTTCTCATGGTCTGTAGGCTTGCTAATTTTTTATCGTTT
TCTTTCAACCTTTGTTCCATACTTTTAAGCATTTGTGCTGAAAATTGTGC
ATCGACCATAGTGTTCGTAAGAGCTTCTTCCTGCGCAGTATTCGATCTGT
TTCGACTCTTATTCCGTTTAGGCAGCCATACGTTGAGCAAAAATTCACGT
TCTTTCTTATAACCACTCAGTCGGTCATGATATAAACAATGCTGTACTAA
CTCCATGCATTTTTCTGCTTTGAAACAAAGATCGGGTATCAAGCGAAGAA
CAGGATAGAAATTGTGGAATCCTTCTTGAAGTTCAGCTTGTCGCAAAAGA
ACGTCACTTCC Run BLAST on NCBI protein sequence of TCONS_00002359-protein >TCONS_00002359-protein ID=TCONS_00002359-protein|Name=TCONS_00002359-protein|organism=Clytia hemisphaerica|type=polypeptide|length=279bp
GSDVLLRQAELQEGFHNFYPVLRLIPDLCFKAEKCMELVQHCLYHDRLSG
YKKEREFLLNVWLPKRNKSRNRSNTAQEEALTNTMVDAQFSAQMLKSMEQ
RLKENDKKLASLQTMRNEVIGYLRERSLQDESDLKMIQIEEENMDSLKQS
LKDETQEQETLLERIDSQYHKARQRKGSTLQPVERNSLCNDIKMCDTKRS
QILAIEKKIDEAFMKCEKLRNKMVSEKWFVRKKSKELTQIDYDIQKIMKE
IMDVKREHKTLGLKQKINLTKIRRLKFQT Run BLAST on NCBI transcript from alignment at sc0000019:58042..58902 Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00002359 ID=TCONS_00002359|Name=TCONS_00002359|organism=Clytia hemisphaerica|type=transcript|length=861bp|location=Sequence derived from alignment at sc0000019:58042..58902 (Clytia hemisphaerica)
GGAAGTGACGTTCTTTTGCGACAAGCTGAACTTCAAGAAGGATTCCACAA
TTTCTATCCTGTTCTTCGCTTGATACCCGATCTTTGTTTCAAAGCAGAAA
AATGCATGGAGTTAGTACAGCATTGTTTATATCATGACCGACTGAGTGGT
TATAAGAAAGAACGTGAATTTTTGCTCAACGTATGGCTGCCTAAACGGAA
TAAGAGTCGAAACAGATCGAATACTGCGCAGGAAGAAGCTCTTACGAACA
CTATGGTCGATGCACAATTTTCAGCACAAATGCTTAAAAGTATGGAACAA
AGGTTGAAAGAAAACGATAAAAAATTAGCAAGCCTACAGACCATGAGAAA
TGAAGTGATCGGGTACTTGAGAGAACGTAGCCTGCAAGATGAGTCTGATT
TAAAAATGATACAGATTGAAGAGGAGAACATGGATTCTTTGAAGCAATCT
TTGAAGGATGAGACTCAAGAACAAGAAACTCTGCTCGAGCGCATAGACTC
TCAATATCATAAAGCACGACAGAGGAAAGGAAGCACTTTGCAGCCTGTAG
AAAGAAATAGTTTGTGCAATGACATTAAAATGTGTGACACAAAAAGATCT
CAGATTCTGGCAATTGAGAAAAAGATTGACGAGGCTTTCATGAAGtgtga
aaaattgagaaacaaAATGGTATCTGAGAAGTGGTTTGTTCGAAAGAAAA
GCAAAGAGCTAACACAAATTGATTACGATATTCAGAAAATTATGAAAGAA
ATCATGGATGTCAAAAGAGAGCATAAAACTCTAGGACTTAAACAGAAAAT
CAATCTAACAAAAATTCGCAgattgaaatttcaaacataatttttaACTT
AAAAGTGCTCT Coding sequence (CDS) from alignment at sc0000019:58042..58902 >TCONS_00002359 ID=TCONS_00002359|Name=TCONS_00002359|organism=Clytia hemisphaerica|type=CDS|length=840bp|location=Sequence derived from alignment at sc0000019:58042..58902 (Clytia hemisphaerica)
GGAAGTGACGTTCTTTTGCGACAAGCTGAACTTCAAGAAGGATTCCACAA
TTTCTATCCTGTTCTTCGCTTGATACCCGATCTTTGTTTCAAAGCAGAAA
AATGCATGGAGTTAGTACAGCATTGTTTATATCATGACCGACTGAGTGGT
TATAAGAAAGAACGTGAATTTTTGCTCAACGTATGGCTGCCTAAACGGAA
TAAGAGTCGAAACAGATCGAATACTGCGCAGGAAGAAGCTCTTACGAACA
CTATGGTCGATGCACAATTTTCAGCACAAATGCTTAAAAGTATGGAACAA
AGGTTGAAAGAAAACGATAAAAAATTAGCAAGCCTACAGACCATGAGAAA
TGAAGTGATCGGGTACTTGAGAGAACGTAGCCTGCAAGATGAGTCTGATT
TAAAAATGATACAGATTGAAGAGGAGAACATGGATTCTTTGAAGCAATCT
TTGAAGGATGAGACTCAAGAACAAGAAACTCTGCTCGAGCGCATAGACTC
TCAATATCATAAAGCACGACAGAGGAAAGGAAGCACTTTGCAGCCTGTAG
AAAGAAATAGTTTGTGCAATGACATTAAAATGTGTGACACAAAAAGATCT
CAGATTCTGGCAATTGAGAAAAAGATTGACGAGGCTTTCATGAAGtgtga
aaaattgagaaacaaAATGGTATCTGAGAAGTGGTTTGTTCGAAAGAAAA
GCAAAGAGCTAACACAAATTGATTACGATATTCAGAAAATTATGAAAGAA
ATCATGGATGTCAAAAGAGAGCATAAAACTCTAGGACTTAAACAGAAAAT
CAATCTAACAAAAATTCGCAgattgaaatttcaaacataa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00002359-exon-sc0000019-1491911889:58042..58902 | TCONS_00002359-exon-sc0000019-1491911889:58042..58902 | Clytia hemisphaerica | exon |
| TCONS_00002359-exon-sc0000019-1510915933:58042..58902 | TCONS_00002359-exon-sc0000019-1510915933:58042..58902 | Clytia hemisphaerica | exon |
| TCONS_00002359-exon-sc0000019-1575043694:58042..58902 | TCONS_00002359-exon-sc0000019-1575043694:58042..58902 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000019 | supercontig | sc0000019:58042..58902 . |
Blast
The following BLAST results are available for this feature:
|
