TCONS_00002352 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002352
Unique NameTCONS_00002352
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2216

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002352 ID=TCONS_00002352|Name=TCONS_00002352|organism=Clytia hemisphaerica|type=transcript|length=2216bp
AAGGCACTGTTTGCCTGACTTAATGCTAATGaaatataaaAACACTTGTG
AAAGATTCTGTTTTCTTCATCAACGCTGCCTAGAAACTATGTGGCAGTAC
ATCTTTTTGTTCAGCAGACAAGGGAAAGTTCGTCTACAAAAATGGTATAA
TACATACACacagaaagagaagaaaaagatcATGCGCGATCTCTTAACCA
TCATTCTGGCCAGGAAACCTAAAATGTGTAGCTTCTTGGAATACAAAGAT
TCTAAAGTTTGCTATAAACGGTATgttaaaatttgttcattttataAACA
CTTTGAAGGAATagatttttgaaatgatttaaaaatttcttatatCAGCC
CCTTTTCACCTTATCATATTTAAACTTTCTGGGTTACCCCTCTTTTCATC
CTAAGAGGGTCCTACAAAACATAATACAACTGTTCACAGTTCAGGCTAAT
GGCCCCTCAATAAAGAGTATCTGACAAAACTTATCCTTTTATATCTATGT
AATTTTTCCCTCTGAAATTTTAGGTATGCAAgtttgtattttgttgttgg
AATTGAGCCTACTGACAATGAGTTGATCGCACTTGAATGTATACACCGAT
ATGTTGAATTATTAGACAAATATTTTGGAAATGTATGTGAACTTgacata
attttcaattttgagaaGGCGTACTACATGTTAGATGAACTCATTCTCGG
AGGGGAGATCCAAGAGACCAGCAAAAAGAAGGTGTTGAGTGCCATCCAAG
CCCAAGATTCTCTACAAGAGgATAGCGAAATCAAACAAGCATTGGAAGAA
ATGGGATTactgtaaaaaatgtttattcTTTATTATGTTTACGAATAATT
TACGAAAAAAAGTTGTTGTGCTGTTTAGCCGTAGACTAGGATGGACTGGG
TCTGAGATTTAACGATGCTTCGTCTATTTTAGGAGTTCTTTTCGAATCAT
TCACTGGTGTTACTAGAGAACTAGTTCGAGAAAGTTTTTTCTAATATATA
TAATGAATTGATTTTGATAACAATTTTCCATAggggataaaaaaatttaa
tattacAATGTatacaaatttcatttttagtaaaattctctttttattga
atgtacaaaagatttttatttttgtttttcgcTCATTAAAGAAgcaatgt
ttactttttttatacTTACGAAATTTTAATGAACCTaccaaatttttaat
tatttttttcaaagttccTGGAACTTCTTTTGCTGTCATCACATAAATAT
TTAgtcctttgtttttttgttaCTCTGTTTAAGGAATTTCTATGAGACAT
TTCATTATCAAGAGTTTGTTTGTCATCACCAGGCtcggcggaacaaccgt
taaagtgcggaggctgaaggctcaaaatcagataaaattcgctaggaatt
tgagaaaaaaatctcatttgctcaaagaCTTCAGTCTCCCCTCATCCGCC
GGGTCTGATCACGACTTATTTACTCTAATTTACTTTTAATATTGgattca
aagtttttcaatcaACGGTCAGTTTTCATgcattttgtttatattttttc
tacAGGGCTTCTTCTAAAACGTTTTTGATCATTGCAatcatttcattaaa
attttactaaATTTATTATTTGATGTTTGTtcaggcgaggccaatttagt
AAGTTGTTATACGGGAATATGTTTTCAGTAATCGAGATGAGCAGAGTGAA
ATATTTAGTCTTTAAATCAtaatcttttcaatttttttttcacatcatta
attattcattttcattattttccaCTTATCCGATTTTCGTAAATATTTTT
CGCAACTAATCTTTGAGCTATCTATTTTTTGCTGATCAACCGACGCATAG
TTTTTGAGAAGCTTGGCCGTAAAACAACTTTAAATTTAGACTGACCTTTA
ATATGTAATACAGTCAACTTTCTCTATTTTTTAATCTTATTGTGATTCGA
ACTGAAACATCTGCTCCCTCAGCATAAGATGCTTTTAAAGATTCGAATCT
TCCTctgttttgaagaaaattaatcGAATTGGAGAAAGTCAACTATATTG
AAAGTtaatctttaaaatcaaaaatatattattcacatttcattctaaaa
taaatattcaagacgaaaaaatttctttttgtgaCAAGTTCTTCTCCGAA
ATTATCACTTGCATGAATACCGTCCCCTAGGACACTTACACCAATTTGTT
TACTGCTAGTAGTTTT
Run BLAST on NCBI

protein sequence of TCONS_00002352-protein

>TCONS_00002352-protein ID=TCONS_00002352-protein|Name=TCONS_00002352-protein|organism=Clytia hemisphaerica|type=polypeptide|length=106bp
RHCLPDLMLMKYKNTCERFCFLHQRCLETMWQYIFLFSRQGKVRLQKWYN
TYTQKEKKKIMRDLLTIILARKPKMCSFLEYKDSKVCYKRYVKICSFYKH
FEGIDF
Run BLAST on NCBI

transcript from alignment at sc0000019:1050712..1059843-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002352 ID=TCONS_00002352|Name=TCONS_00002352|organism=Clytia hemisphaerica|type=transcript|length=9132bp|location=Sequence derived from alignment at sc0000019:1050712..1059843- (Clytia hemisphaerica)
AAGGCACTGTTTGCCTGACTTAATGCTAATGGTAAGGTAATCTATCCATC
TAATATTTCGTATTAAAAGGTCCTAGGATTTTCAGATTCAAATGCATTTA
ATCGGCTCTTATTATTCCATAGATTCCATAGAATTTCCATAGATTTTCCA
TCGAAAATGTATGAATTTCCAAGGCAATTGAATTGGGCCATTCCAGAATT
TGTCTGTAACTCACGGGGGCGGACGACACAGGATTTCCGAGGGCAAAAGT
TTTCACCAAAATTCAAAATTTCCAAGGCGAGAGAAGAAAATGTATGAATT
TCCAAGGCAATTGAATTGAAAAAGGCAAAATTTTTGCCATAGAGCATTAA
ATGAACGTTAAAACAACGCTGGGACTGAATCACTGAGACAGGGATGTTAT
AAATATAATAACGAGTTCATGTAAAAATACTCTAGTCTCCAACCACTCTT
TAACTAATTTATTATACAAAGCTCACGAGTGTAAACACAAAGTAAAATAT
TTTTCTTTCTTGTGTATACACAAAGAAAGATCAGACATAATCTGTATAAA
AGGCTATGACGTCAAAAGTAAAAGAAAAACTATCAAATAAAAGAGAAAAG
AGAAGCCTTTCACAAATCTGTATGATAAAAGGCTATGACGTCAAAAGTGA
AAGAAAAACTATCAAATGAAAGAGAAGAGAGATTTGTGGAAAGTCTGGGT
CACGAAAAAGGGAATCACAAGAGAGAAGCAAATATAAGCTATTTATAGTT
TACCTGCTTTGTTGAAAATAATTTTTACTACGCGCGTGCTATTGTTTTCA
AAGAGTATTTTAGGCGTGTTTAAATCGCACACCTTGGAGTTTTTTTAACA
TTTTTAGGCGTGTTATTTTCGCACTCATAAATCATTTTACGCGTGTGCCA
GCGCGTGCACGTGCTTTCACACGCCATTCATGGCCAGGCCTGTGATCAGG
TGAAAGTAATGAATATCTTATTTATTCAAAAATACCTCCAGGGTAATCTT
CTGTCTGATGTCCTATCAACACTTAATTTTGATGAAATTGATCACAAAAC
TGGCACCAGGGGCAAAGCTATTAAACTACTAAAAACTTTCAACGGTCAAA
ACCACAAATTTTGGACTCAACTCTTTCTCTCGTCTTTCGTCAAAACNCTA
AAACTTTCAACGGTCAAAACCAGTAATTTTGGACTTAACTCATTTCTCTC
GTCTTTCGACAAAACAATAGAATGAGTTACTAATAAATCATCCTGACATT
GATTTTCACAACCTTGATACTGATGAACTTAAATCTTTATCTACAAAATT
CTATTTAGACAAATACAAAACTGAAGAGGAATAATCTTTGTGTGTGTGTG
TACGTGTGTTTCTGTTCAAATGTGTGTGCGTGAACTTAGTGTGTTTTCCC
AGGGTGGGAGGGGGTGGGTGGTGTAACAGGAAGAACTTTTCAAATAAAAC
TACTCAAAGAAATTGTCATAAAATAAAAGTAAAAATATTTCTTATACCTA
TTCATTTGTTGTTACTATTAATATTATGATAATCGTTTATTCATTTTTTC
TTTAGTTCTGTAACAATTTTTCAGTTTCTTCTAAGGTTCCCCATTGTATT
AGAGAAATCTTTTTTTTTTGTAAGGGGTTATCCTGCTGCTTTGCTGCGAA
AATATATTCAATTCAATTCAATTCAAGTAACGGCTTTGTCACTGTGCCGG
GTGCATACTCGTCACCTTGGACTCGCAGGGTTGCTAGTAACGGCTCGAAT
TTCAGTCAGGTTAAAATAGGGGCAATTTTACCCATATTATAATAACATTA
CCCCGTCTTTTTTTTATTGTATAAGTATTTCCAAATTTTGTATTCTGCTG
TGCGAGTGTGGCTCAACAGATAGCGCGCTGGGTTTCTGATCAGAAACTCT
GTCATTTGGTGGGGTCGAACCTAGGTCGGGTCGATATTTTAAGGTAAGTT
AAAACACTTTAAAATAGTCAGAAAACATAGTAAATAAGTTAGAAAAGTCA
CCAGGGGGTCAGAAAAAAGCCTCAGAGAAGATAGACAGAAATAAAAAGTC
GATGTCGGAACGAGCAATAGACAAGAGTTCTTTCCGTTTTGGTTAGCCAG
TGCCCAGTCCAGTAATATGGGCAGTTCCAGAAAAAAACATTACCATAAGT
TGGTCTAATCTCAACATCCGTCTTCTAATTTGGACACCCTTCAGAGATAG
GAATAATATGAAAGTTGGAATCGGTGATTGAAAAAAGATTTATCCTCCCT
TTTACCACTAAGCAAAGAAAAATAATTTTGACCTTTTTTTTATTTTTCAG
CTCTAGACTGCTAGAAAAGGGTGTCGAATTTAGACGAGGGATGTCGACAG
GAATTTTTTGCACTTGGAAATCGTGAGAAATTTTGAAAAAGTCTGAAAAT
TCAGGATTTCCCTAATTTGTTGGTCTTCCGTATTGGAAATAATCCATAAA
ATCTGCTCCATTTTCATACCAAGTATATATCGGAAAATCCAAGATTTTTC
CCTTAAAAATTCTTGAATGTTACGGAAATCATCCTGAAGTTTTTCAAAAG
TAAATTGGTAAGACTATAACTCGAACCGCCCAATTTTGCAGAGTATTGAG
AATAATTTGAGCATGGGTAGCTGATAGTTGGGGGTATGACACGCGGAAGC
GCCAATAAATACTATCTTGTTTAAAACAATACTATCCTTTTTTTAAACAT
ACTATCTTCATTTATAAACATACTATCTTTTTAAAACAATACTATCTTCG
TTTAAAAACATACTATCTTTTAAAAGAATACTATGTTTTTACAAAACATA
CTTTCTTCGTTTAAAAACATACTATTTCATTTAAAAAGAAACAGTTTGAA
AGGCCGAGTTAACAGTTTAACGAGTGAAAAAATATTTAAAAAACATGTTG
AGTAAGGTTTTGTCTCTTTTACCCAAATCATTAGGGGCAATGGTCGAGAG
TGGGTACCTTGATGGAGAGTGACACACAGTGAACGCAATCAGTGTTTCAA
ATAAACATGGTGTAAAGGAGGAGGGAAAGACCAACCAAAATCATTGACGA
GAAACAAGTTACTGGTTTAAAAAGGATTGGACTCAAATGGAGACAAATTG
CAGAGCTTTTGGCGTTGTGGAAAACACTCTCCATTAGATTTGCCTTTTTT
CCTTCCTCCATTTTATTTTTGGTCAAGAAACTGAGAAATCAGTTCTACCC
CATGCCTTTGTTGATCGGCCACATGTTATCGTAATGCGCATGCGCACAGT
GGGAAACTGGATAAGCGAGACAAGAAAGATTTATAACTCGGAATTTTTTA
TAATCAGTCAAATTAGTCGATCTATAACTCGACCTGACTCGGCAACCTTA
ACTTGGCCTTATTGAAGAAAGAAGAAAAGTAGCGATTTCAATTTTGGATG
CAAGTATCGGTTCAACTTAGATAGTTTCGGTTTAAATATGATAGTTTCTT
TTTAAATGAGATAGTATGTTTTTAAACGAAGATAGTATGTTTTTGAAAAA
GATAGTATTGTTTTAAAAAGAAAGTATGTTTTAAAGAAAATAGTATTTAT
TGGCGCTTCTGCGCGCCAGATGGGGGCACTCTTACACTGTTATAAAGCCC
CAAATGTGGTTAGCCCGAACTTTGATGTTAGGCCAAAGTTCAGCCAGCAA
AATTTTGGATTTTTGCCTCAAAAAGCTTGGCCCAAGCACCCCTTGAACAT
ATTTTCATGTACCTCTTTGTACCTCTTTAAGATTTTAATCTTTGCAACGC
CTCAAAAGGTGCTGACTTCTTGGTATTATACAGATAAAAACTGTGTAATT
GCACTTTTAGATCTCAAAAGTTTAAGCGCGTCGTAATTAAGAGGATTTCC
CAGACTGTTGGTATGGAAACATAGGATTAAAGGCCCGTGGTAGGTGTACT
GTAACTAGGGTTGGGGCTAACCCTAGTATGTAAATATATTTGGGTCTGTA
AAATATACATCATAAATAGCTTGTGAATTTGATTGAATATCTAATCTAGT
GGTAGCGTATGGAGCTTCTGAAGCAAAGGTATGTTTCATGTGTGGGTTCA
AAATTCACTCAGGACTCAACTTTGGCAACTTTCAAAATACCTAAAAATGA
CTAAAAAAGTCTAGCTTTGAAAAATCCAAAAGTTTCAGAAACTCCACACC
AAAAATAAAAAGTACAGGATCTCACCTGTACGAAGTCAAGACCCATTCCA
AATATGTCAGAATATTGTTTGATTTTCTATCAAAAATAGATCATTTATTA
CGCTCAGAACTTAGAACTTACGCTCTATAGACTCCGGTGAGGATCAAGCT
CTGCTTCTTCCTTCACCTCCAGCGTTTAAGCAAAGCTCAACACTCTGGTG
CCAACAGCAGTCTATGCTTGCTAACCCAAGCCGCACTGATGAGTCCTGGG
GAGGATGAAAACGTGTTTGCAGATGGATGTAAGAAAGTAAGAGTGTGCAT
ATCTGGCCTTTCTTACCTTTCCAAGGCCTTTATTTTTGGGAAAAGCCCAG
TTGACCTCGCATAGTAAAAATTAATCACTTGATCTAGATAGGTTAAAACA
GTAATTGAACTCTATTCAAAAACTTTTAACCCTTTTTGAATTCCTACTTT
GACATTTGCGTTTTTCCATACAACTCCAAGTGTTGTGATTAGCATTAGAA
AGCTAAATACCTTTGGCAGACTGGATGGTGCTGATAAGTGGTCCAGCTGT
CTCCAGTTTTTGGCTTTGCTTGAGCATGTAGCAAATCCATATCACTAGAT
TCAGTCCCTTTTGAAGAAAAACAAACGAAAAATTGAGATCAGTTGACCAT
TTTCTTTCAAATTTTGGAGGTGTTTTCATGTTTTCAATATAGTTTAATAA
ACTTTTATGGGGCTTTGAAATATGTTTTCTTTTTGGTCTATGTATATATA
ATCTTTGAAAACAAAAGTAAAAAAATTCAAGATGGCGATATCCTCTAGTC
TACTTCACTGGTCCTTTTTTCTGTAGTATTCATGGTGCTGCTGCACCAGA
TCTTTAATACTGTTCTGATGCATTTGTAGATACTTTTGTATTGCATTTAT
TTTAAGAAATATAAAAACACTTGTGAAAGATTCTGTTTTCTTCATCAACG
CTGCCTAGAAACTATGGTAAGTAATTTTCTCTTCATTCAATCTTAAGTTC
TTGCACAAGACATTTAATTCACATACACATATAATAAAATGAATTCTAGG
ATTGATGAAAAGATTGAGCTCCAGTTTTTCCGATACCCCACTGATACAAA
CACAGAATTGTTACAATACATCCAGTTTGACTGCTGATGAAATAAAAGTA
AATGTAATACCTTAATAAATATTTACCATCTTTTATTATAGTGGCAGTAC
ATCTTTTTGTTCAGCAGACAAGGGAAAGTTCGTCTACAAAAATGGTATAA
TACATACACACAGAAAGAGAAGAAAAAGATCATGCGCGATCTCTTAACCA
TCATTCTGGCCAGGAAACCTAAAATGTGTAGCTTCTTGGAATACAAAGAT
TCTAAAGTTTGCTATAAACGGTATGTTAAAATTTGTTCATTTTATAAACA
CTTTGAAGGAATAGATTTTTGAAATGATTTAAAAATTTCTTATATCAGCC
CCTTTTCACCTTATCATATTTAAACTTTCTGGGTTACCCCTCTTTTCATC
CTAAGAGGGTCCTACAAAACATAATACAACTGTTCACAGTTCAGGCTAAT
GGCCCCTCAATAAAGAGTATCTGACAAAACTTATCCTTTTATATCTATGT
AATTTTTCCCTCTGAAATTTTAGGTATGCAAGTTTGTATTTTGTTGTTGG
AATTGAGCCTACTGACAATGAGTTGATCGCACTTGAATGTATACACCGAT
ATGTTGAATTATTAGACAAATATTTTGGAAATGTAAGAACAGTATTTTCA
TAGGAAGTGGTATAAGTTTGATAAATTTCAAGTGCTATTGAAATGCCAGT
ACAAATCAAAGCTTTTTAAATTCCAAGATTTAAGTTTTGGCGTTTGTAGA
GGTAATTTGGATAGGTAACGAGGTAATTTGATGATAAAATTTGACTTGCT
TTAAAGTCTTACTTCTGTAAGGCAGTACTCTTTTTTCAAAATTCAAAAAA
TATAGGACATCCCGCTTCAAACAAAATTGGGAGCGAGGCTCTCTACTCAC
AAGATTCAACATGCTTTAGATGTTGTAATCCAGGCATTCAACTAACTGAT
ATTTTGAGGTTTTCTACAATTTGAATATGATATATGATAAAATTTGACTT
GCTAAAATAAATACCCCATCATAAGATAAATTGACGATTGTTTTTATCTG
TTTTAGGTATGTGAACTTGACATAATTTTCAATTTTGAGAAGGTATGTAC
ATATATGTGGTGTGTTTTTAAAGTTCTTCTTAAACTATTCCTCTCTGAAA
AGAGAATCTATTGTTTAATTAAATCTTAAATTCTTCAATATTCGGTGAAT
TTTTATGAAGCAATCTGTAAAGTATATTTTTAAGGGAAATAATTGACGAG
GAGCAAAAATCGATAAAATTAAATTCATTTGGTTTTCAGTCTAGTGAGAT
AAATGCTTTAGTTCAAAAGGATTATTTCATTGAACTCTTATTTTTTGTTT
CCAACAGGCGTACTACATGTTAGATGAACTCATTCTCGGAGGGGAGATCC
AAGAGACCAGCAAAAAGAAGGTGTTGAGTGCCATCCAAGCCCAAGATTCT
CTACAAGAGGTACAGAGTAAATTGATGATTGTTTGGACCAATGAAGTACA
AACCCGAAGGGCTAGAATCGAATCTCCTTGGTAGGATTTGAATACCAAAT
CCTATCAAAGTTGCGCAACCTAGCGTGGTCCGCCTAGTTTTTACACAAAT
GACAGATTGAAACTAAAATTTATACTTTAAATTTCGAAAAATATATCACT
CGAAAACAAAGGAATGACTAGATTCAATCCGTCGTCAAAAATAAGGCGCA
TATTTTAAGGCTCCATTTTTCCTTGCCTGAGAAAGGTTAAAGTTCGATTC
TAGCCCTGCGGGCTTATACTTTCTTGGTTTGGACTGCAATAAATATGGAT
TCACTCTTTGTACAGGAGACATCAACATCAAAGTTGAATAGAGAAGAGAC
ATTTGAAACTTTCGCTTTAATTTCACGTCTTTCGATCCTTTGGAAATTTT
TGATGCTATCGCAATTAAAGGGACATAAAAGTAGTAAAATGTAAACATTG
CGCAAACCACGTGTCATTAAAGAGAACAATTAAAATCACGTGTCCAAAAC
AAACTTGTAAAACAATTGAAACAGTCAAAATCAGCCATATTTGTTTAGAT
TTTTTATTTTAACATGTGACATTTGTTTTGGTTTTGTCTCCCGCTGCACA
CGGTTTGTTTACAAATTTCGTCAGTACTTTTATGTCCCTTTAAATCTATA
CTTTGAAAATTAGATAATAATGAATATTTTTATCCGCAAAGCAGTTCACA
CATTTATTATCTGATATTCCGATGGCAGATTGACGGCCGCCCACACTAAA
GCTCTAAATGAGCGGGCCAATTTCCCATCGGAGAGGAATGATAGTCGACC
TTTGATGTGCCGTATCCCCAGTCGGGGATTAAATAATTCAATAACCTTTT
AGTGTAGTTTAGTGAAGAGTTGGTACTTTCATATATTTGTACTGATATCT
ATCTACTGAATTAAATTTGTTTTCTCTTTTTTTTAGGATAGCGAAATCAA
ACAAGCATTGGAAGAAATGGGATTACTGTAAAAAATGTTTATTCTTTATT
ATGTTTACGAATAATTTACGAAAAAAAGTTGTTGTGCTGTTTAGCCGTAG
ACTAGGATGGACTGGGTCTGAGATTTAACGATGCTTCGTCTATTTTAGGA
GTTCTTTTCGAATCATTCACTGGTGTTACTAGAGAACTAGTTCGAGAAAG
TTTTTTCTAATATATATAATGAATTGATTTTGATAACAATTTTCCATAGG
GGATAAAAAAATTTAATATTACAATGTATACAAATTTCATTTTTAGTAAA
ATTCTCTTTTTATTGAATGTACAAAAGATTTTTATTTTTGTTTTTCGCTC
ATTAAAGAAGCAATGTTTACTTTTTTTATACTTACGAAATTTTAATGAAC
CTACCAAATTTTTAATTATTTTTTTCAAAGTTCCTGGAACTTCTTTTGCT
GTCATCACATAAATATTTAGTCCTTTGTTTTTTTGTTACTCTGTTTAAGG
AATTTCTATGAGACATTTCATTATCAAGAGTTTGTTTGTCATCACCAGGC
TCGGCGGAACAACCGTTAAAGTGCGGAGGCTGAAGGCTCAAAATCAGATA
AAATTCGCTAGGAATTTGAGAAAAAAATCTCATTTGCTCAAAGACTTCAG
TCTCCCCTCATCCGCCGGGTCTGATCACGACTTATTTACTCTAATTTACT
TTTAATATTGGATTCAAAGTTTTTCAATCAACGGTCAGTTTTCATGCATT
TTGTTTATATTTTTTCTACAGGGCTTCTTCTAAAACGTTTTTGATCATTG
CAATCATTTCATTAAAATTTTACTAAATTTATTATTTGATGTTTGTTCAG
GCGAGGCCAATTTAGTAAGTTGTTATACGGGAATATGTTTTCAGTAATCG
AGATGAGCAGAGTGAAATATTTAGTCTTTAAATCATAATCTTTTCAATTT
TTTTTTCACATCATTAATTATTCATTTTCATTATTTTCCACTTATCCGAT
TTTCGTAAATATTTTTCGCAACTAATCTTTGAGCTATCTATTTTTTGCTG
ATCAACCGACGCATAGTTTTTGAGAAGCTTGGCCGTAAAACAACTTTAAA
TTTAGACTGACCTTTAATATGTAATACAGTCAACTTTCTCTATTTTTTAA
TCTTATTGTGATTCGAACTGAAACATCTGCTCCCTCAGCATAAGATGCTT
TTAAAGATTCGAATCTTCCTCTGTTTTGAAGAAAATTAATCGAATTGGAG
AAAGTCAACTATATTGAAAGTTAATCTTTAAAATCAAAAATATATTATTC
ACATTTCATTCTAAAATAAATATTCAAGACGAAAAAATTTCTTTTTGTGA
CAAGTTCTTCTCCGAAATTATCACTTGCATGAATACCGTCCCCTAGGACA
CTTACACCAATTTGTTTACTGCTAGTAGTTTT

Coding sequence (CDS) from alignment at sc0000019:1050712..1059843-

>TCONS_00002352 ID=TCONS_00002352|Name=TCONS_00002352|organism=Clytia hemisphaerica|type=CDS|length=963bp|location=Sequence derived from alignment at sc0000019:1050712..1059843- (Clytia hemisphaerica)
TGGCAGTACATCTTTTTGTTCAGCAGACAAGGGAAAGTTCGTCTACAAAA
ATGGTATAATACATACACACAGAAAGAGAAGAAAAAGATCATGCGCGATC
TCTTAACCATCATTCTGGCCAGGAAACCTAAAATGTGTAGCTTCTTGGAA
TACAAAGATTCTAAAGTTTGCTATAAACGGTATGTTAAAATTTGTTCATT
TTATAAACACTTTGAAGGAATAGATTTTTGAAAATATAAAAACACTTGTG
AAAGATTCTGTTTTCTTCATCAACGCTGCCTAGAAACTATGAGGCACTGT
TTGCCTGACTTAATGCTAATGTGGCAGTACATCTTTTTGTTCAGCAGACA
AGGGAAAGTTCGTCTACAAAAATGGTATAATACATACACACAGAAAGAGA
AGAAAAAGATCATGCGCGATCTCTTAACCATCATTCTGGCCAGGAAACCT
AAAATGTGTAGCTTCTTGGAATACAAAGATTCTAAAGTTTGCTATAAACG
GTATGTTAAAATTTGTTCATTTTATAAACACTTTGAAGGAATAGATTTTT
GAAAATATAAAAACACTTGTGAAAGATTCTGTTTTCTTCATCAACGCTGC
CTAGAAACTATGAGGCACTGTTTGCCTGACTTAATGCTAATGTGGCAGTA
CATCTTTTTGTTCAGCAGACAAGGGAAAGTTCGTCTACAAAAATGGTATA
ATACATACACACAGAAAGAGAAGAAAAAGATCATGCGCGATCTCTTAACC
ATCATTCTGGCCAGGAAACCTAAAATGTGTAGCTTCTTGGAATACAAAGA
TTCTAAAGTTTGCTATAAACGGTATGTTAAAATTTGTTCATTTTATAAAC
ACTTTGAAGGAATAGATTTTTGAAAATATAAAAACACTTGTGAAAGATTC
TGTTTTCTTCATCAACGCTGCCTAGAAACTATGAGGCACTGTTTGCCTGA
CTTAATGCTAATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001240XLOC_001240Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002352-proteinTCONS_00002352-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002352-exon-sc0000019-1575043694:1059813..1059843TCONS_00002352-exon-sc0000019-1575043694:1059813..1059843Clytia hemisphaericaexon
TCONS_00002352-exon-sc0000019-1575043694:1054728..1054787TCONS_00002352-exon-sc0000019-1575043694:1054728..1054787Clytia hemisphaericaexon
TCONS_00002352-exon-sc0000019-1575043694:1053962..1054502TCONS_00002352-exon-sc0000019-1575043694:1053962..1054502Clytia hemisphaericaexon
TCONS_00002352-exon-sc0000019-1575043694:1053502..1053537TCONS_00002352-exon-sc0000019-1575043694:1053502..1053537Clytia hemisphaericaexon
TCONS_00002352-exon-sc0000019-1575043694:1053135..1053236TCONS_00002352-exon-sc0000019-1575043694:1053135..1053236Clytia hemisphaericaexon
TCONS_00002352-exon-sc0000019-1575043694:1050712..1052157TCONS_00002352-exon-sc0000019-1575043694:1050712..1052157Clytia hemisphaericaexon
TCONS_00002352-exon-sc0000019-1510915933:1059813..1059843TCONS_00002352-exon-sc0000019-1510915933:1059813..1059843Clytia hemisphaericaexon
TCONS_00002352-exon-sc0000019-1510915933:1054728..1054787TCONS_00002352-exon-sc0000019-1510915933:1054728..1054787Clytia hemisphaericaexon
TCONS_00002352-exon-sc0000019-1510915933:1053962..1054502TCONS_00002352-exon-sc0000019-1510915933:1053962..1054502Clytia hemisphaericaexon
TCONS_00002352-exon-sc0000019-1510915933:1053502..1053537TCONS_00002352-exon-sc0000019-1510915933:1053502..1053537Clytia hemisphaericaexon
TCONS_00002352-exon-sc0000019-1510915933:1053135..1053236TCONS_00002352-exon-sc0000019-1510915933:1053135..1053236Clytia hemisphaericaexon
TCONS_00002352-exon-sc0000019-1510915933:1050712..1052157TCONS_00002352-exon-sc0000019-1510915933:1050712..1052157Clytia hemisphaericaexon
TCONS_00002352-exon-sc0000019-1491911889:1059813..1059843TCONS_00002352-exon-sc0000019-1491911889:1059813..1059843Clytia hemisphaericaexon
TCONS_00002352-exon-sc0000019-1491911889:1054728..1054787TCONS_00002352-exon-sc0000019-1491911889:1054728..1054787Clytia hemisphaericaexon
TCONS_00002352-exon-sc0000019-1491911889:1053962..1054502TCONS_00002352-exon-sc0000019-1491911889:1053962..1054502Clytia hemisphaericaexon
TCONS_00002352-exon-sc0000019-1491911889:1053502..1053537TCONS_00002352-exon-sc0000019-1491911889:1053502..1053537Clytia hemisphaericaexon
TCONS_00002352-exon-sc0000019-1491911889:1053135..1053236TCONS_00002352-exon-sc0000019-1491911889:1053135..1053236Clytia hemisphaericaexon
TCONS_00002352-exon-sc0000019-1491911889:1050712..1052157TCONS_00002352-exon-sc0000019-1491911889:1050712..1052157Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000019supercontigsc0000019:1050712..1059843 -
Expression

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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
9.99496	10.2176	24.4402	26.5582	89.4042	63.4622	58.0645	60.933	43.5217	36.9807	35.1454	37.2307	23.8529	21.283	30.0732	32.3814	29.6794	28.5358	17.9825	18.2802	28.7754	29.2058	26.3525	25.485	19.4609	23.9833	22.9078	17.5873	45.3888	36.7266
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR016635AP_complex_ssu
IPR022775AP_mu_sigma_su
IPR011012Longin-like_dom
Vocabulary: Molecular Function
TermDefinition
GO:0008565protein transporter activity
Vocabulary: Biological Process
TermDefinition
GO:0015031protein transport
GO:0006810transport
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015031 protein transport
biological_process GO:0006810 transport
molecular_function GO:0008565 protein transporter activity
Blast
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BLAST of TCONS_00002352 vs. Swiss-Prot (Human)
Match: AP1S2 (AP-1 complex subunit sigma-2 OS=Homo sapiens GN=AP1S2 PE=1 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 7.150e-38
Identity = 70/97 (72.16%), Postives = 81/97 (83.51%), Query Frame = 3 
Query:  522 RYASLYFVVGIEPTDNELIALECIHRYVELLDKYFGNVCELDIIFNFEKAYYMLDELILGGEIQETSKKKVLSAIQAQDSLQEDSEIKQA-LEEMGL 809
            RYASLYF   IE  DNELI LE IHRYVELLDKYFG+VCELDIIFNFEKAY++LDE +LGGE+QETSKK VL AI+  D LQE++E  ++ LEE+GL
Sbjct:   60 RYASLYFCCAIEDQDNELITLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLLGGEVQETSKKNVLKAIEQADLLQEEAETPRSVLEEIGL 156

HSP 2 Score: 88.1965 bits (217), Expect = 1.315e-19
Identity = 40/63 (63.49%), Postives = 51/63 (80.95%), Query Frame = 2 
Query:   95 QYIFLFSRQGKVRLQKWYNTYTQKEKKKIMRDLLTIILARKPKMCSFLEYKDSKVCYKRYVKI 283
            Q++ LFSRQGK+RLQKWY   + KEKKKI R+L+  +LARKPKMCSFLE++D K+ YKRY  +
Sbjct:    2 QFMLLFSRQGKLRLQKWYVPLSDKEKKKITRELVQTVLARKPKMCSFLEWRDLKIVYKRYASL 64
The following BLAST results are available for this feature:
BLAST of TCONS_00002352 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
AP1S27.150e-3872.16AP-1 complex subunit sigma-2 OS=Homo sapiens GN=AP... [more]
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