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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00002351 ID=TCONS_00002351|Name=TCONS_00002351|organism=Clytia hemisphaerica|type=transcript|length=3752bpRun BLAST on NCBI protein sequence of TCONS_00002351-protein >TCONS_00002351-protein ID=TCONS_00002351-protein|Name=TCONS_00002351-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1060bp MKVTLASLAKHNYWYEKEPNSTIDVICLLWNGMFIKLSNIRADLPLEKIKRun BLAST on NCBI transcript from alignment at sc0000019:1012840..1027875- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00002351 ID=TCONS_00002351|Name=TCONS_00002351|organism=Clytia hemisphaerica|type=transcript|length=15036bp|location=Sequence derived from alignment at sc0000019:1012840..1027875- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000019:1012840..1027875- >TCONS_00002351 ID=TCONS_00002351|Name=TCONS_00002351|organism=Clytia hemisphaerica|type=CDS|length=57294bp|location=Sequence derived from alignment at sc0000019:1012840..1027875- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00002351 vs. Swiss-Prot (Human)
Match: PK3CB (Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit beta isoform OS=Homo sapiens GN=PIK3CB PE=1 SV=1) HSP 1 Score: 609.757 bits (1571), Expect = 0.000e+0 Identity = 417/1095 (38.08%), Postives = 592/1095 (54.06%), Query Frame = 1
Query: 106 NSTIDVICLLWNGMFIKLSNIRADLPLEKIKEDLWSQRGKHSK----EPKENYVFVVVSNNHGTEELVDEKLSLFDVKPVKPYLK-VTRKQGNEEXXXXXXXXXMLIG---HNISACNQEEVKEAQKNLSDMCNRISIERGKSSWYRRAIYTYPPDFEEDSKLPRFLEEKFPNKRIHISVSVLKNSSNVFDVEYS--IKPLELIEKALRKRAQTLRVDYKDD---PDQYMLKVLGSESYFLGNIVFENDQECYKEIPLIQYKYIREALYWDRRPSLIVMKREDMDICKLSSTNQDYPPAL----------LPKNRQSKRNKFI-NLWDLSPKTMFKVKIKSALDLNSGKLWE-KVQCGIFHGGDEVCETRSTSRIQGSSP-VWNEFLNFDLPVCDIPRMARLCFCIVG------------------YENKKKGQAV--PLAWVNMPLFNYKGFLHTGSFRIYCWQHSKKSNRTAANLTFNPLGTVMNS--NESGPCLAFELTEHDGKRPVVYPSEEDVYEKAANDITKGTQESDGENILLVKGGKQHKEQIEDIIKRDSLAPMFEQDKELLWRLRAECCLEYPESLPKLLQCVKWNNKEQVAQIHFLLQSWNCRTLEVEIALELLDYKFPDLKVRQRAVEVLNNISDNQLEMYLLHLVQALKYESYLDSPLARYLLKRALNNRRIGHYLFWHLKADVGNTEHSLQFGLLLELYCFGAVEHIDSLYKQVELMKKLKTVSSXXXXXXXX---XXXXXXXXXCFK--GFSRFFQDLVSPLDPRYRLKQLRVEKCNMMSSKKKPFWLVFENXXXXXXXXXXXXXSGDDLRQDMLTLLSLQLMDSVWKSAGLDYGIIPYRCLSTGPSIGLIQVVTNSKTIASIQSKSGVI--RGALSASVLYNWL-EANSTKVTNTDQVSPLTGEQKLELLTRNFTRSLVGYSVGMYVLGVGDRHNDNIMMKEDTGQLFHIDFGHFLGNFKTKFGIQRERAKFVLTSDMCYVI--AKDGADDASSRFKSMCLEAFSCLRERGNLFITVFAMLLSSGLPELRRPTDIDYLRDSLALLKDEADAQKHFIEIFEEALNKGGWTTIQFLIHNIR 3216
+ +I V LL G++I+L R + + IK+ LW Q + ++Y+F V+ EEL DE L DV+P P LK VTR E K +LIG H + EV E ++ + + SW TYPP E + +P LE+K ++ ++V +N +VF + S + P+++ E A++KR L + K+D P Y+L+V G Y G + PLIQ++YIR + P I++ + CK+ + A+ LP K+ + I ++W+ F++ + LN+ + + V+ G+FHG + +C+T +S + G + +WNE L FD+ +CD+PRMARLCF + Y+ +K V P+AWVN +F++KG L TG ++ W S NP+GTV + E+ L + E + K+P YP + + EKAA SD N+ +GGK+ +++I+ RD L+ + E + +L+W LR +C +P+SLPKLL +KWN E VAQ+ LLQ W L ALELLD+ +PD VR+ AV L +SD +L YLL LVQ LKYE +LD L+R+LL+RAL NRRIG +LFWHL+++V S+QFG++LE YC G+V H+ L KQVE + KLKT++S++ + M C K + DL SPL+P L +L VEKC M SK KP WLV+ N D + +IFK+GDDLRQDMLTL L+LMD +WK AGLD ++PY CL+TG GLI+VV+ S+TIA IQ S + A + L NWL E NS L+ FT S GY V YVLG+GDRH+DNIM+K+ TGQLFHIDFGH LGNFK+KFGI+RER F+LT D +VI K G + RF+ C +A+ LR GNLFIT+FA++L++GLPEL DI YL+DSLAL K E +A K F + F+EAL + T + ++ H +R
Sbjct: 27 DGSIPVDFLLPTGIYIQLEVPR-EATISYIKQMLWKQVHNYPMFNLLMDIDSYMFACVNQTAVYEELEDETRRLCDVRPFLPVLKLVTRSCDPGEKLDSKIG--VLIGKGLHEFDSLKDPEVNEFRRKMRKFSEEKILSLVGLSWMDWLKQTYPP--EHEPSIPENLEDKLYGGKLIVAVH-FENCQDVFSFQVSPNMNPIKVNELAIQKR---LTIHGKEDEVSPYDYVLQVSGRVEYVFG------------DHPLIQFQYIRNCVMNRALPHFILV-----ECCKIKKMYEQEMIAIEAAINRNSSNLPLPLPPKKTRIISHVWE--NNNPFQIVLVKGNKLNTEETVKVHVRAGLFHGTELLCKTIVSSEVSGKNDHIWNEPLEFDINICDLPRMARLCFAVYAVLDKVKTKKSTKTINPSKYQTIRKAGKVHYPVAWVNTMVFDFKGQLRTGDIILHSWS----SFPDELEEMLNPMGTVQTNPYTENATALHVKFPE-NKKQPYYYPPFDKIIEKAAE-----IASSDSANVS-SRGGKKFLPVLKEILDRDPLSQLCENEMDLIWTLRQDCREIFPQSLPKLLLSIKWNKLEDVAQLQALLQIWP--KLPPREALELLDFNYPDQYVREYAVGCLRQMSDEELSQYLLQLVQVLKYEPFLDCALSRFLLERALGNRRIGQFLFWHLRSEVHIPAVSVQFGVILEAYCRGSVGHMKVLSKQVEALNKLKTLNSLIKLNAVKLNRAKGKEAMHTCLKQSAYREALSDLQSPLNPCVILSELYVEKCKYMDSKMKPLWLVYNNKVFGEDSVGVIFKNGDDLRQDMLTLQMLRLMDLLWKEAGLDLRMLPYGCLATGDRSGLIEVVSTSETIADIQLNSSNVAAAAAFNKDALLNWLKEYNSG--------------DDLDRAIEEFTLSCAGYCVASYVLGIGDRHSDNIMVKK-TGQLFHIDFGHILGNFKSKFGIKRERVPFILTYDFIHVIQQGKTGNTEKFGRFRQCCEDAYLILRRHGNLFITLFALMLTAGLPELTSVKDIQYLKDSLALGKSEEEALKQFKQKFDEALRESWTTKVNWMAHTVR 1065 The following BLAST results are available for this feature:
BLAST of TCONS_00002351 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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