TCONS_00002347 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002347
Unique NameTCONS_00002347
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1643

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002347 ID=TCONS_00002347|Name=TCONS_00002347|organism=Clytia hemisphaerica|type=transcript|length=1643bp
GATTAATTTTCGCTTAGACTTTTTTTCGGTCAAAATTCGAATTTTAAATT
TTAGCAATGACTATTTTTCGCGAAAATGGCCAAAGTTCAGGAAAATCGCG
AATATTAATCCACGCGAAAGTCAACCCACTTAAGATAAGGCAAAATTAAA
ATTTGTATGTACGTAAAAAAACCATCGCCATGGTAAAAAGCAACACGAAA
AATTGCTGAGATTGTCAATGCATCATGTCTCATTTTCATCATCGTCCTCA
CAAGTAACATTATATTAAGTGGTTGTGGAGTGAGACTTTGGTATGGACCA
CCAGTGAAATTAACAGCTGTACCATGAAGTTTATGTCCATTACCACCATA
ATTGATTAAATTAAGATAGGGTTGGTGCGCAGAAAAATTGTAATCATGAA
ATGAATTGCTAGATGGATTAGCATTTTGAAACATAGACACATGACTGACA
TTGCTAAACGGTGAAGACCTCTGTGTGTTGGAGGAATTAGATTTCTGAGC
CACCAGACACAGCAGTAAGATTATTGATGGCTGGAGCAACATTACTTCTT
GGCTGGGGAGAAGATTTTGTTTTCTTCAATGGTGATGGTTTCGAATCACT
AGCATATCCGATTTCAGTAGAAGAATTACCTCTTTTCATTGGACTTATAT
TTGGTTTCCGTGGTTGACACATTTCTTTCACTATGTCCAAATTGTTTGTG
AATGTTTTGTCAACCTTTTCAAACTCTTTCCTTAATTTACAAAAGGCTTT
GTATCGAGAAGACATCATACCGAACATGATTTGTATATTATTTCCCAGAA
CAGTAGCTTCACCTCCTTGCTGGTTAAGGACTTTCAGGAAATCAATATAG
ATGAAAACAATGTGAGCGATTCTCTCCATTTGCTCCCCTCGAACATACAA
ACATTTACTCTGGGGATCGATCCATAAATAATTTTGACCACTCTTTCGAG
GACCAGTATCTGTTGTTTCTggaatttttgatgttttactcCAAAATACA
CTGCCAGCAAATTGATTTTGTAGTCGATCACGATTAAATTTATCCATATC
TGGCTTGGTTACCTTTTTCTTATCCTTGGCTTCAATAGCAACTGTTCCCA
AATCAGGAACTTCAATTCTTATGTCACACGAATGATTTTTTGATTCTTCG
TCTATGTCATAATCCTTTACATTCAAATCTTCGATTGCACGATCCAAAGC
AAATTTAATACATTCTTCCAAAGTTTTACCTTTTGCAGAAGATTCAACGC
TATCATAAAGCTCTTTTTTCTGGATTAAATGTTCAGCTTTTTTAACCTTT
TCCTCATTTTCAGCTATTTGTGAGGTAAGTTGCTGAGTTTTTTGACGTTC
CAAGGCTGTGATTCGTTTTTGCTCTTCTCGGTCTTTTTCTGCTCTCTcag
cttttttcttttcaacttcTACGAGCTTTTTCTGTTCCTCTCGGTCTTTT
TCTGCTTCTTCTCTGTCTTTTTCTGCTTCTTCTCGGTCTTTTTCTGCTTC
TTCTCGGTCTTTTTCTGCTCTCTcagcttttttcttttcaacttcTACGA
GCTTTTTCTGTTCCTCTTGGTCCTTTTGTGCTTTCTcagctttttctttt
tcgatttcTGTGAGCTTTTTCTGCTCCTCTCTGTCTTTTTCNN
Run BLAST on NCBI

transcript from alignment at sc0000019:980987..982629-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002347 ID=TCONS_00002347|Name=TCONS_00002347|organism=Clytia hemisphaerica|type=transcript|length=1643bp|location=Sequence derived from alignment at sc0000019:980987..982629- (Clytia hemisphaerica)
GATTAATTTTCGCTTAGACTTTTTTTCGGTCAAAATTCGAATTTTAAATT
TTAGCAATGACTATTTTTCGCGAAAATGGCCAAAGTTCAGGAAAATCGCG
AATATTAATCCACGCGAAAGTCAACCCACTTAAGATAAGGCAAAATTAAA
ATTTGTATGTACGTAAAAAAACCATCGCCATGGTAAAAAGCAACACGAAA
AATTGCTGAGATTGTCAATGCATCATGTCTCATTTTCATCATCGTCCTCA
CAAGTAACATTATATTAAGTGGTTGTGGAGTGAGACTTTGGTATGGACCA
CCAGTGAAATTAACAGCTGTACCATGAAGTTTATGTCCATTACCACCATA
ATTGATTAAATTAAGATAGGGTTGGTGCGCAGAAAAATTGTAATCATGAA
ATGAATTGCTAGATGGATTAGCATTTTGAAACATAGACACATGACTGACA
TTGCTAAACGGTGAAGACCTCTGTGTGTTGGAGGAATTAGATTTCTGAGC
CACCAGACACAGCAGTAAGATTATTGATGGCTGGAGCAACATTACTTCTT
GGCTGGGGAGAAGATTTTGTTTTCTTCAATGGTGATGGTTTCGAATCACT
AGCATATCCGATTTCAGTAGAAGAATTACCTCTTTTCATTGGACTTATAT
TTGGTTTCCGTGGTTGACACATTTCTTTCACTATGTCCAAATTGTTTGTG
AATGTTTTGTCAACCTTTTCAAACTCTTTCCTTAATTTACAAAAGGCTTT
GTATCGAGAAGACATCATACCGAACATGATTTGTATATTATTTCCCAGAA
CAGTAGCTTCACCTCCTTGCTGGTTAAGGACTTTCAGGAAATCAATATAG
ATGAAAACAATGTGAGCGATTCTCTCCATTTGCTCCCCTCGAACATACAA
ACATTTACTCTGGGGATCGATCCATAAATAATTTTGACCACTCTTTCGAG
GACCAGTATCTGTTGTTTCTGGAATTTTTGATGTTTTACTCCAAAATACA
CTGCCAGCAAATTGATTTTGTAGTCGATCACGATTAAATTTATCCATATC
TGGCTTGGTTACCTTTTTCTTATCCTTGGCTTCAATAGCAACTGTTCCCA
AATCAGGAACTTCAATTCTTATGTCACACGAATGATTTTTTGATTCTTCG
TCTATGTCATAATCCTTTACATTCAAATCTTCGATTGCACGATCCAAAGC
AAATTTAATACATTCTTCCAAAGTTTTACCTTTTGCAGAAGATTCAACGC
TATCATAAAGCTCTTTTTTCTGGATTAAATGTTCAGCTTTTTTAACCTTT
TCCTCATTTTCAGCTATTTGTGAGGTAAGTTGCTGAGTTTTTTGACGTTC
CAAGGCTGTGATTCGTTTTTGCTCTTCTCGGTCTTTTTCTGCTCTCTCAG
CTTTTTTCTTTTCAACTTCTACGAGCTTTTTCTGTTCCTCTCGGTCTTTT
TCTGCTTCTTCTCTGTCTTTTTCTGCTTCTTCTCGGTCTTTTTCTGCTTC
TTCTCGGTCTTTTTCTGCTCTCTCAGCTTTTTTCTTTTCAACTTCTACGA
GCTTTTTCTGTTCCTCTTGGTCCTTTTGTGCTTTCTCAGCTTTTTCTTTT
TCGATTTCTGTGAGCTTTTTCTGCTCCTCTCTGTCTTTTTCNN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001237XLOC_001237Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002347-exon-sc0000019-1575043694:980987..982629TCONS_00002347-exon-sc0000019-1575043694:980987..982629Clytia hemisphaericaexon
TCONS_00002347-exon-sc0000019-1510915933:980987..982629TCONS_00002347-exon-sc0000019-1510915933:980987..982629Clytia hemisphaericaexon
TCONS_00002347-exon-sc0000019-1491911889:980987..982629TCONS_00002347-exon-sc0000019-1491911889:980987..982629Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000019supercontigsc0000019:980987..982629 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.95005	1.43764	1.2486	0.6621	2.68285	2.07002	2.87919	3.57793	2.44225	2.13232	1.88686	1.4462	2.88591	3.74876	4.17257	3.5809	3.78403	3.81632	1.75797	1.9178	2.88546	2.43751	1.71649	2.53955	2.73672	2.35546	2.22774	1.28488	2.43209	1.63364
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00002347 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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