TCONS_00002341 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002341
Unique NameTCONS_00002341
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1289

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002341 ID=TCONS_00002341|Name=TCONS_00002341|organism=Clytia hemisphaerica|type=transcript|length=1289bp
TTTTTATAGGAACTTAGATTATTTTGGCAGGGTGAGTGTTGTGATTTATA
TTTTCGGGGGGAATGTCGTGGAATAGAAATTATGATTGACAGTTTGACCA
CGTGAGCAGTAGGGTCACGTGGATATATAAATAGCGCGACATTTGTAATT
TATGATTAGTACGAAACTAGAAAGAGAAGAAGCAACATCTAATAGAAATA
TATAGTCCTCCATTTATTTCGTTTCGGACATTTGGTCCAAACGAACCGGA
TATGAATCTGGTATAAAAGTTTTTNCAAATTTACGAATAATTCCTATCCG
TCATTGGGGAATATATCGTCACACATTTGATTTGAGAATTTGATCTTTAC
ACATTTGATTTAGGATTTGAGAACTTTGGAGTTACACATGATTTGGATAC
TTCAGACTTGATTGAGAATTTGAGATTTACGACTTAACGAACGGGAACAA
AGTTTGATATTTTCTCGgccccattggaaatttggccCCTACGACTAAAG
AATATATCGAAAATTAGTTACTTGAACGTTGAGAATTGTACGTATTTAGA
AAGCAAGAAATTTTGAATCGTCAAAATTGGGAAACTTTACTGGAACTTNt
ggaaatttaatgaaatatttattGATTGAACTTATGCTGTTGAACTTGGA
ACTCACACGGATACGATTTATGGATTTACATTTGATTTAGATACTTTTGA
GATTTGGAATTTATCGAAAATTGGAGAACTTTGGATACAAATTTACGAAT
AATTCCTATCCGTCATTGGGGGAATATATCGTCACACATTGATTTgagat
ttgaatttgaaaacttttgagatTTAGATTGTATCGAAAATTGGAGAAGT
TTGGATACAAATTCACGAATAATTCCTACCCGTCATTGGGGAATATATCG
TCATACATTTATTTGAGATTTGAATTGAAAACCTTATAGATTGTATcgaa
aattggaaaactttgGATACAAATTTACGAATAATTCCTATCCGTCATTT
GGGGATATATCGTCACACAATTTGATTTGAGATTTGAGGATACAAATTTA
CGAATAATTCCTATCCGTCATTGGGGGATATATCGTCATACAAATTGATT
TGAGATTTGAGGATACACATTTACGAATAATTCCTATCCGTCATTGGGGG
GATATATCGTCACACATTTGATTTGAGATTTGAGGATACAAATTCACGAA
TAATTCCTACCCGTCATTGGGGAATATATCGTCATACATTGATTTGAGAT
TTGAATTGAAAACCTTTGAGACTTATATAGATTGTATTN
Run BLAST on NCBI

transcript from alignment at sc0000019:965170..966580-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002341 ID=TCONS_00002341|Name=TCONS_00002341|organism=Clytia hemisphaerica|type=transcript|length=1411bp|location=Sequence derived from alignment at sc0000019:965170..966580- (Clytia hemisphaerica)
TTTTTATAGGAACTTAGATTATTTTGGCAGGGTGAGTGTTGTGATTTATA
TTTTCGGGGGGAATGTCGTGGAATAGAAATTATGATTGACAGTTTGACCA
CGTGAGCAGTAGGGTCACGTGGATATATAAATAGCGCGACATTTGTAATT
TATGATTAGTACGAAACTAGAAAGAGAAGAAGCAACATCTAATAGAAATA
TATAGTCCTCCATTTATTTCGTTTCGGACATTTGGTCCAAACGAACCGGA
TATGAATCTGGTATAAAAGTTTTTNCAAATTTACGAATAATTCCTATCCG
TCATTGGGGAATATATCGTCACACATTTGATTTGAGAATTTGATCTTTAC
ACATTTGATTTAGGATTTGAGAACTTTGGAGTTACACATGATTTGGATAC
TTCAGACTTGATTGAGAATTTGAGATTTACGACTTAACGAACGGGAACAA
AGTTTGATATTTTCTCGGCCCCATTGGAAATTTGGCCCCTACGACTAAAG
AATATATCGAAAATTAGTTACTTGAACGTTGAGAATTGTACGTATTTAGA
AAGCAAGAAATTTTGAATCGTCAAAATTGGGAAACTTTACTGGAACTTNT
GGAAATTTAATGAAATATTTATTGATTGAACTTATGCTGTTGAACTTGGA
ACTCACACGGATACGATTTATGGATTTACATTTGATTTAGATACTTTTGA
GATTTGGAATTTATCGAAAATTGGAGAACTTTGGATACAAATTTACGAAT
AATTCCTATCCGTCATTGGGGGAATATATCGTCACACATTGATTTGAGAT
TTGAATTTGAAAACTTTTGAGATTTAGATTGTATCGAAAATTGGAGAAGT
TTGGATACAAATTCACGAATAATTCCTACCCGTCATTGGGGAATATATCG
TCATACATCGAATTGAGATTTGAATTGAAAACCTTTGAGACTTATATAGA
TTGTATCGAAAATTGGATAAGTTTGGATACAAATTCACGAATAATTCCTA
CCCGTCATTGGGGAATATATCGCCATACATTTATTTGAGATTTGAATTGA
AAACCTTATAGATTGTATCGAAAATTGGAAAACTTTGGATACAAATTTAC
GAATAATTCCTATCCGTCATTTGGGGATATATCGTCACACAATTTGATTT
GAGATTTGAGGATACAAATTTACGAATAATTCCTATCCGTCATTGGGGGA
TATATCGTCATACAAATTGATTTGAGATTTGAGGATACACATTTACGAAT
AATTCCTATCCGTCATTGGGGGGATATATCGTCACACATTTGATTTGAGA
TTTGAGGATACAAATTCACGAATAATTCCTACCCGTCATTGGGGAATATA
TCGTCATACATTGATTTGAGATTTGAATTGAAAACCTTTGAGACTTATAT
AGATTGTATTN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001236XLOC_001236Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002341-exon-sc0000019-1575043694:965675..966580TCONS_00002341-exon-sc0000019-1575043694:965675..966580Clytia hemisphaericaexon
TCONS_00002341-exon-sc0000019-1575043694:965170..965552TCONS_00002341-exon-sc0000019-1575043694:965170..965552Clytia hemisphaericaexon
TCONS_00002341-exon-sc0000019-1510915933:965675..966580TCONS_00002341-exon-sc0000019-1510915933:965675..966580Clytia hemisphaericaexon
TCONS_00002341-exon-sc0000019-1510915933:965170..965552TCONS_00002341-exon-sc0000019-1510915933:965170..965552Clytia hemisphaericaexon
TCONS_00002341-exon-sc0000019-1491911889:965675..966580TCONS_00002341-exon-sc0000019-1491911889:965675..966580Clytia hemisphaericaexon
TCONS_00002341-exon-sc0000019-1491911889:965170..965552TCONS_00002341-exon-sc0000019-1491911889:965170..965552Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000019supercontigsc0000019:965170..966580 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.32585	2.30005	1.64301	1.2818	17.1447	9.41492	15.2859	16.0729	12.6767	14.5949	32.3903	8.02885	12.6727	14.3632	41.5358	37.9515	15.5221	17.029	9.32018	10.9324	63.533	60.5292	26.4062	26.2652	2.85483	6.20287	79.285	68.0659	50.8295	44.6799
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00002341 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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