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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00002332 ID=TCONS_00002332|Name=TCONS_00002332|organism=Clytia hemisphaerica|type=transcript|length=3627bpRun BLAST on NCBI protein sequence of TCONS_00002332-protein >TCONS_00002332-protein ID=TCONS_00002332-protein|Name=TCONS_00002332-protein|organism=Clytia hemisphaerica|type=polypeptide|length=695bp MAYRLLRKHSFAALLKNTRLVRHASTTNAKPFDKVLIANRGEIACRVMETRun BLAST on NCBI transcript from alignment at sc0000019:862071..881838- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00002332 ID=TCONS_00002332|Name=TCONS_00002332|organism=Clytia hemisphaerica|type=transcript|length=19768bp|location=Sequence derived from alignment at sc0000019:862071..881838- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000019:862071..881838- >TCONS_00002332 ID=TCONS_00002332|Name=TCONS_00002332|organism=Clytia hemisphaerica|type=CDS|length=45936bp|location=Sequence derived from alignment at sc0000019:862071..881838- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00002332 vs. Swiss-Prot (Human)
Match: PCCA (Propionyl-CoA carboxylase alpha chain, mitochondrial OS=Homo sapiens GN=PCCA PE=1 SV=4) HSP 1 Score: 738.413 bits (1905), Expect = 0.000e+0 Identity = 378/664 (56.93%), Postives = 479/664 (72.14%), Query Frame = 2
Query: 281 NAKPFDKVLIANRGEIACRVMETCRRLGIKTVAVYSEADARSKHVDMADEAVCIGPARSNESYLVIDKVIEACHQTGAQAVHPGYGFLSENYHFYEELEKAGITFVGPNKYALQAMGDKIESKRIGVQAKVNVIPGFDGVVKDPDEAVQLAESIGYPVMLKASAGGGGKGMRIAYNEKEVRSGFVLSSQEAAKSFNDDRLLIEKFVEEPRHIEIQIMADSHGNCVYLNERECSVQRRNQKVVEEAPSPFIDPDTRAAMGQQAVMLAKEVGYNSAGTVEFLVDKHKNFYFLEMNTRLQVEHPITECITGVDLVELMLRSAAGQTLPLEQKDVPLNGWAVECRVYAEDPYKNFGLPSIGLLSNYVEPKQINNVRCDSGIKEGSEISIYYDSMICKLVTYGKDRASALNTMDKALDSYVIRGLAHNISLLRDICDNPNFRAGTITTGFLPQEYPEGFHGKQLKVQELDELLA-----GVAF----MHLKRDEISRTFLDRPISLKSKESVDLYITVGGEKHLVTGLYDTDSIKITVNGDREIVLKSNWDYSSLIYEANVNGKDVIFQKHERN-GNSYKLQHCGTVFSLDVKTELENQLDEYMLEKPDEGASPMLRTPMPGTVISVDCKVGDKVFEGQEVAVIEAMKLQNSLTMGKGGIVKKIYVSPG 2242
N K FDK+L+ANRGEIACRV+ TC+++GIKTVA++S+ DA S HV MADEAVC+GPA +++SYL +D ++EA +T AQAVHPGYGFLSEN F L + F+GP+ +A+QAMGDKIESK + +A+VN IPGFDGVVKD +EAV++A IGYPVM+KASAGGGGKGMRIA++++E R GF LSSQEAA SF DDRLLIEKF++ PRHIEIQ++ D HGN ++LNERECS+QRRNQKVVEEAPS F+D +TR AMG+QAV LA+ V Y+SAGTVEFLVD KNFYFLEMNTRLQVEHP+TECITG+DLV+ M+R A G L +Q D+ +NGWAVECRVYAEDPYK+FGLPSIG LS Y EP + VR DSGI+ GS+ISIYYD MI KL+TYG DR AL M ALD+YVIRG+ HNI+LLR++ N F G I+T FL YP+GF G L E ++LLA VAF H + E SR + +P + SV L+ V H V + + V+G + + + S W+ +S + +V+G Q R G + +Q GTV+ +++ T L +L+++MLEK E S +LR+PMPG V++V K GD V EGQE+ VIEAMK+QNS+T GK G VK ++ G
Sbjct: 59 NEKTFDKILVANRGEIACRVIRTCKKMGIKTVAIHSDVDASSVHVKMADEAVCVGPAPTSKSYLNMDAIMEAIKKTRAQAVHPGYGFLSENKEFARCLAAEDVVFIGPDTHAIQAMGDKIESKLLAKKAEVNTIPGFDGVVKDAEEAVRIAREIGYPVMIKASAGGGGKGMRIAWDDEETRDGFRLSSQEAASSFGDDRLLIEKFIDNPRHIEIQVLGDKHGNALWLNERECSIQRRNQKVVEEAPSIFLDAETRRAMGEQAVALARAVKYSSAGTVEFLVDSKKNFYFLEMNTRLQVEHPVTECITGLDLVQEMIRVAKGYPLRHKQADIRINGWAVECRVYAEDPYKSFGLPSIGRLSQYQEPLHLPGVRVDSGIQPGSDISIYYDPMISKLITYGSDRTEALKRMADALDNYVIRGVTHNIALLREVIINSRFVKGDISTKFLSDVYPDGFKGHMLTKSEKNQLLAIASSLFVAFQLRAQHFQ--ENSRMPVIKPDIANWELSVKLHDKV----HTVVASNNGSVFSVEVDGSK-LNVTSTWNLASPLLSVSVDGTQRTVQCLSREAGGNMSIQFLGTVYKVNILTRLAAELNKFMLEKVTEDTSSVLRSPMPGVVVAVSVKPGDAVAEGQEICVIEAMKMQNSMTAGKTGTVKSVHCQAG 715 The following BLAST results are available for this feature:
BLAST of TCONS_00002332 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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