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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00002320 ID=TCONS_00002320|Name=TCONS_00002320|organism=Clytia hemisphaerica|type=transcript|length=741bp
gaaaaaggaaaaataatttcatgaAATATTATGCTCCATTGTTGTATTTT
AATCAGAAAGCAATAATATGATGTTGTATGCGTTACAAAGTatattcata
attttttcaTGGAGTATAAGTTACGGATTTGCATGTCAAAAGTATTTAGG
AGTGCCGAGAAATAATCATGGAATTAAACCAACTTTGCTGGTCGACGAAG
AAACTGAAATCACCAAAGGCAAGCTTATTGCGATTGTCCCTGTTTTGAGT
CCAGAATGGTCTGTTGCATTCAATATTAGATTAACACAAGCTGCTGGGAG
TGTGCATAGAAATGTCTTTCGAATGGCAGAAATAGATGACAACAGCTTTA
CCCATGGCACTCGCATACCTGCTGTATTTATTTTGGAAGATACATCAGAT
CTGAGCATTCACAGTTCTGTTAATGCTCACCCGCATAAAACTTTCACGAT
CCCAAATTTGTTAATGAACCAAACATATCATGTGTTTATTAAACAAAGAT
ATGTAAGCGGTGGTGATTACAAATATTCAATCATCTTTGATGGCGTTGAA
GTTTTTTCTCAAATCAACACAATTGCTCGTCAATTCTACAATGTCAAAGT
CTACAACAGTGATCGCTGGTATCAAGCAGCTTTTGGTTATATTAGTAAAT
TTGAATTAACCAATTTTCTTTGAAACCCAACTAAGAGTAGGAGGGGGGCT
ATAAATGGATGTtattcaaaatatgtcaaactaaatttttt Run BLAST on NCBI transcript from alignment at sc0000019:675305..679026- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00002320 ID=TCONS_00002320|Name=TCONS_00002320|organism=Clytia hemisphaerica|type=transcript|length=3722bp|location=Sequence derived from alignment at sc0000019:675305..679026- (Clytia hemisphaerica)
GAAAAAGGAAAAATAATTTCATGAAATATTATGCTCCATTGTTGTATTTT
AATCAGAAAGCAATAATATGATGTTGTATGCGTTACAAAGTATATTCATA
ATTTTTTCATGGAGTATAAGTTACGGATTTGCATGTCAAAAGGTATGTTT
ATTTGAAATATAATTTACTTTACTAACAAAAACAGAACTGGCTCTGAAAG
GAAGATTCCCTGAGACCATGTTCAGACGTTACGGTTTCTCTCCGTTCCGT
CCCGAAACAAATGTGAACGTCAAAATTCGAAACGTCAAAAAAGAAAAACG
TTACAAAGCAAAACAGATCGAAACGGTTTCGCTCCACTTTTTTTATCGGA
ATGGAACTGCTCCGTTTTCTTGCTCCAAAACGTTCCAAAACCAATATGAG
CACTCTCGATCTGTAACGAAAATCGTACCGGAGCGAAACGGAACAGTAGC
GTGTGAACATGGTCTGAGTCTATGAAAAGATTAGAAAACAACACCAAAAA
TTTGCCTTTTTCATAGGGGAATCATGCATCCGCTATTTGGTTATAAGCTA
TTTCCAATGAATTTAATGACAAAAAATACTGCATTGACGTACGACAAAAA
ACTTATGCTAAAATCACGAGGGTGAATTGCGCCAAATCCGTACCGTGATT
TTGTAAACTAGGAAAATTGTTTTCAAATCACCATAGAATGGGATACGTTA
GGTATTAGAGCTTAAGTTTTTGTGGATTTGGTACTGCCGCAAAAAATATC
AGTCAGGACTAAGTCATTGTTTAATATTTTGTTTTTTCTTTGAAATACTA
GCAAAAATCTGTGACGCATATGCCTGGTTTCCTATCACTAAATTTTTAAT
TAGACTTTCTAAATTCTTGTCAACTTTATGTAAAAATGTTACTCTATAAT
GGAAATATATGCTTTGCAAATTACAAGCCATTTTCTTGAACCAAACTAGA
GTTATAAATGAAAATGTGTGACGGAAGGGACACAATTTTGTTGTTTTCAG
AGCAAAAGTTGGTTTTCAAAGCTTCTTAGAGGAAAAACTCTTAACAGTTT
TCTGCACTATTTGGTCACATCTTGATAGGAGAATACTCAAATACAAAAAT
GCATCCTCAGAATATACAGTTCTTGAACAAATAAGCATCTTGTGCCGAAT
TTACCTTTGAAAAAATAGTGTCCTGTTCGTCACACATTTCCAGTTATAAC
TCAAGTTTGGTTCAAGAAAATAGCTTAAAATTTTCAAATTATATACTTCC
ATTATAAAATAATACTCTTACATAAAATTGACAAGAATCTACAAAGTCTA
ATAAAAAATTAAGGGGATAGAAGACAGGCATATGCGTGACGGATGGGACG
TTCCGTCCGTGACAGATTTTTGCTAATATTTCAAAGACGAAACAAAGTAT
CAAAAATTACTTTAGCTCTGACTAATACCTTCTGCCACAGTACCATATCC
ACAACAACTCAAGTTCCAATACCTAACACACCTACTTCTATGGCAATTTG
AAGACAGTTTGTCTCGTTTACAAACCCATGGTACAGATTTGGTACAATTC
ACCCACGAATCCCTATTTCATAGGATTTCATCTTTCATAGTGTGCACTTA
CTCTTGTCTCCCGAATAGACGGGGGAGTCCGAATAAGCAGGGGGTAGGAA
AGCTTTCTAAATTCTAATAAGCGGTTGGGATGGAATAAGAGAGGGGGATA
ATTCGAAGACAGAATTTTTTTTTAACTGATATCAATTTCAACAACAAAAA
AAGAAACTTTAACAAATGAACACGTAAAATAAGAACCAATACTAACAAAA
AGGAAAATTTTAACAAGTTTAAGTTCTATCTACACTGTAATAAAATATTA
TAAATTATTCGAATTTAATTAGCGGGGGGTCTTAATAAGAGGGCGGGGTG
GATTTTTTTTTCATTTAACAATTAGCGGGGGGGGGACATCTATTCGGGAG
ACAAGAGTATGGGAAACCGGCGTTAGTAGATTATAAATGGTAAAATTATT
TCAATAATTGAATAAGACTTTAAATTTTCATAAAATCAAACAATACCCTA
AGATCTATTTCTTTTATTTAGTATTTAGGAGTGCCGAGAAATAATCATGG
AATTAAACCAACTTTGCTGGTCGACGAAGGTGAGACTTTATGCGTATGTC
TTTAGAAAAGGAGAAAAAAGAATTTTCATTTCAACAGCCCCTGCCACCGG
AAGAATTGGTAATAATATAGTCCCGAGTGGAAAATTATAATCCAATTTTT
GTCCCAGCTCAATCAAATAAAGTAATCTTGACTGCAAAGTATTGTGCTCT
TTTTCGCTTTCTTCCCCACCGAGCTTTCTGGCTTGCAATAATGGAATTCA
AATCTCAGTCATAACCATATGAATATCAACCCACATCGAGTTTCAGTCCG
TTATTTTTATCCCAATGGCTGAAAAAATCTTAACGAGTCTGTGAAAAGGG
GGTATTTCATTTCACTCTTTAATGCGGTTGGATCTATCCTAGCCTCGTTT
ACCCTGATTATCAGAGGTTAAGATTTCAAAGAATATATATTGACCTCTGA
AGACCAATAATAGAAATTTTATCGCCCATGTGTTAATCTAATCACTGTAG
AAAAAATCAAAGATGAAGAGCAACTATTACCATATTAATGTCTAGCAGAC
TGTATCAGTATGCAGTTTACTATTTACGAATTCCCCAAAAACCTCCAAGT
GTAATTGAAATGAGTTTCTTTCAAAAGAAATCTTTTACATGATCCCCAAA
TGTATAACAGTAATTACTAAACTTTTAATTATAGAAATGTCACTTTAATT
GAACCGAAATAATAGACAAACTTTATGTTATGATTCTCTATCACTGACTT
TTTTTAAAAAGCATTAATGACATTCTTGAGTTGTGTTTTCAACGACGGGA
ATAAAAATATCAACTTTGAACTTCATCCAAGATCTTGGATAGTCGTCATG
GTTACTTTTATCTTCGTTGATTGCGCACTGAATAGAATCTTGATTGGTTG
GCACAGCGTCGATATATGATTTCGACCTGTACTTTTCACGGTAAACCTCG
TTAAGCTCTTATCATTTTTTTGCCTTTCATCACCCACCAGATTAATTTCC
CGCCAAACTTTACATATTATACTTGTCAGATCAGCAAAATTGTAAAATCA
TACTTATTTTTTTCAATTCTCACCCTTTCAGAAACTGAAATCACCAAAGG
CAAGCTTATTGCGATTGTCCCTGTTTTGAGTCCAGAATGGTCTGTTGCAT
TCAATATTAGATTAACACAAGCTGCTGGGAGTGTGCATAGAAATGTCTTT
CGAATGGCAGAAATAGATGACAACAGCTTTACCCATGGCACTCGCATACC
TGCTGTATTTATTTTGGAAGATACATCAGATCTGAGCATTCACAGTTCTG
TTAATGCTCACCCGCATAAAACTTTCACGATCCCAAATTTGTTAATGAAC
CAAACATATCATGTGTTTATTAAACAAAGATATGTAAGCGGTGGTGATTA
CAAATATTCAATCATCTTTGATGGCGTTGAAGTTTTTTCTCAAATCAACA
CAATTGCTCGTCAATTCTACAATGTCAAAGTCTACAACAGTGATCGCTGG
TATCAAGCAGCTTTTGGTTATATTAGTAAATTTGAATTAACCAATTTTCT
TTGAAACCCAACTAAGAGTAGGAGGGGGGCTATAAATGGATGTTATTCAA
AATATGTCAAACTAAATTTTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00002320-exon-sc0000019-1575043694:678885..679026 | TCONS_00002320-exon-sc0000019-1575043694:678885..679026 | Clytia hemisphaerica | exon |
| TCONS_00002320-exon-sc0000019-1575043694:676898..676955 | TCONS_00002320-exon-sc0000019-1575043694:676898..676955 | Clytia hemisphaerica | exon |
| TCONS_00002320-exon-sc0000019-1575043694:675305..675845 | TCONS_00002320-exon-sc0000019-1575043694:675305..675845 | Clytia hemisphaerica | exon |
| TCONS_00002320-exon-sc0000019-1510915933:678885..679026 | TCONS_00002320-exon-sc0000019-1510915933:678885..679026 | Clytia hemisphaerica | exon |
| TCONS_00002320-exon-sc0000019-1510915933:676898..676955 | TCONS_00002320-exon-sc0000019-1510915933:676898..676955 | Clytia hemisphaerica | exon |
| TCONS_00002320-exon-sc0000019-1510915933:675305..675845 | TCONS_00002320-exon-sc0000019-1510915933:675305..675845 | Clytia hemisphaerica | exon |
| TCONS_00002320-exon-sc0000019-1491911889:678885..679026 | TCONS_00002320-exon-sc0000019-1491911889:678885..679026 | Clytia hemisphaerica | exon |
| TCONS_00002320-exon-sc0000019-1491911889:676898..676955 | TCONS_00002320-exon-sc0000019-1491911889:676898..676955 | Clytia hemisphaerica | exon |
| TCONS_00002320-exon-sc0000019-1491911889:675305..675845 | TCONS_00002320-exon-sc0000019-1491911889:675305..675845 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000019 | supercontig | sc0000019:675305..679026 - |
Blast
The following BLAST results are available for this feature:
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