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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00002308 ID=TCONS_00002308|Name=TCONS_00002308|organism=Clytia hemisphaerica|type=transcript|length=583bp
AAACAAAAGAACTTATATACACCCGGGATTACAAATTAAACATAATTAAA
ACTAAATTATAAAGTTCATTAAAGATGGCTTTTCTGCCATCAACATATAG
CAGCCCTTGAAATTAAGACTTAATAACTTTAGAGGAATTTTTTATTATCT
CAGAATTATACTGGCAGtgaataaatataaaaattgaGAAAACATGAAGC
CAGTAGAGCAAGACGAAATGTTTCCTGAAGCCTCTTCATCAACAAACTGG
GAAGATGAGGTAGCAAATGAAGGTGTTGTATTACCTAAAATGTGCATGGA
AGGAAGTATTTCCATTTCTGAAAAAGGAGTCCACACAGACTTCTATAACT
ctttTGATGACTTATTTGACGATGATGATTTGGCATGAATAATTTATATT
AAAATTGCCTACTGAATCGTATGAAATGATCATTTTTATGTCATTTGGat
attttatttattctgagattcttttcttcttgtaaatatattaaaaatta
acaaaaatcttGTTTGATCCTGATAAAGTTTTTATGGGCGGAACCATTGG
TTACCTTTACTCTCACAGATTTTCGAAACCAAG Run BLAST on NCBI transcript from alignment at sc0000019:423267..426012- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00002308 ID=TCONS_00002308|Name=TCONS_00002308|organism=Clytia hemisphaerica|type=transcript|length=2746bp|location=Sequence derived from alignment at sc0000019:423267..426012- (Clytia hemisphaerica)
AAACAAAAGAACTTATATACACCCGGGATTACAAATTAAACATAATTAAA
ACTAAATTATAAAGTTCATTAAAGATGGCTTTTCTGCCATCAACATATAG
CAGCCCTTGAAATTAAGACTTAATAACTTTAGAGGAATTTTTTATTATCT
CAGAATTATACTGGCAGTGAATAAATATAAAAATTGAGAAAACATGAAGC
CAGTAGAGCAAGACGAAATGTTTCCTGAAGCCTCTTCATCAACAAACTGG
GAAGATGAGGTAAAGTTTAATAGTTACTATATAATAAATGTTGAATTCAT
ACAGAGTTTTCCCTTTATTTCATATCTTATCCTTTTCTGTTCTGTTAAGG
GCTCTGGACATACCCAATTTTTCGATTTTACACTAACTGAAATGGCAATT
TCTGCATTTAAAAAAAGATTAATGTATAACTTTTTTTATAATGTCCTGTT
ACACCTACCATTTTAGAATTTAAAAATCGAAAAATTGAAATGAAAAAATT
AAATGAAGAAGAAAACGAAGAGTTTTTCGAAGAAGAGTATTTCACCTGTT
CAAAGCCCTAATCTCGGTAAAAATCAAACATTTTGGAATTTTTTTAGGTT
CAGGTGATATGTATCTGTTTAGTATCTAAAAATACAATTTCGGAAAATTT
TTGTGGAAGTATCTTTCCTTTAAAATCTCCAAAAAACCTCATTTTTGGCA
ATTTTCTCCACTAAATTTCCATACAAAAACTGCTATAACTTGTGCTGTAG
CCAAATAGAAAATTTTTCTGAAAAAATCTAAATAAAGAAATTATTTAGCA
TTAACTCAAAAAAAGTTTGAAACAATAAAATGATTTCCTTAAGGAGATTA
GGCTTTTTTTGTGAAAACTATATGAATAGCGTAACATTTTTACGATGTTT
TATTAAGGTCCATGCCACACTTATTCCTTACTAATTACTTAAAAATTCAT
TTTTTCAAAAGCAGTTTGTTCTTAACATGTCAAAGAAGCGAAAACATGAG
GTTTTATCTTCAAATTCTGAAATTGATTTTTCACTATGACCAGAGCCCTT
AAAACAGAACATTTGTTATGTATATTTTGATGATACAAGGCAGAACTATA
AAAATAATTTTTCAGTTTTTGGATTGGACCTACCTCCGGGTACCCCGGTG
GAGGTTCTATAAATTAACCCGTGTCCGTTCGTCCGTCCGTCCGTCCGTCC
GTTCGTCTGTCTGTTACCAGCTTTTCTCAGGATTGGCTCATTAGTTTTTT
CTGATTTTTTGCACAATGATGCAAAATGGCAATGCCCAGAACTTGACGGA
GCCCGATTTTTGAGAAAAAATTTATTTGGGCAAATTTGGGTCAAAAAGTA
CCTAAAAATAGGGTTTTTTGGACTTTGTGCAAAATCCTGTCATTACTTTT
TTCTGATTTTTTGTACAAAGATGGAGGGCAAGATTTTCTAAAGAATTGCT
GAAGTGGTTTTTCCCGGAAAATTCTTATTCGCCTTAAAAAACGAATTTTC
GTATTTTGGGGAAATTCCCTCTAACCAAATAAGGAAATATAGCTTTTCTC
AATGTTGACTCAAAAATTTTTTCTGATTTTTTGCACAATGATCCAAAATG
GCAATGCCCAAAATGTGACGGAGCCAGAGAGCCGAGGCCTGAATGGTTTA
AGTGATTTTCGTATTTGGGGAAATTCCTTTTTACCATTTTACATTATTCA
ACACACAAGCTTTATTTTTCCATTCTGAATTTTTGNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTTTTCCATTCTG
AATTTTTGTACAATTATTGTCACTTTTTTCTTATTTTCATCTGATGTTAA
TCATTAGGTAGGTCCATTCAGCATGTTGCTTGTTTTTCTTGCGGTGCAAA
AAAATGAAGATTGTTGTTTAAAAATGTAATAACCAAAATATTTAAATTTC
CGAGTCTATTGATAACTTTATTAAAAGTTGTTGAGAATTTATAAATTAAA
TCAGAATTCGAGGACTACAAAGCACTTTTAGACCATGGCATGAAAAATAT
AAATATAATGAATCACTCTTCTTGTTTCCAGGTAGCAAATGAAGGTGTTG
TATTACCTAAAATGTGCATGGAAGGAAGTATTTCCATTTCTGAAAAAGGA
GTCCACACAGACTTCTATAACTGTAAGCATATAGAAAATGTCCATAGTTC
GTTCTTAAATTGGTCTTATTTTCGGCATTTTTTGAGTCTCATTGTTCTTA
TAAAATTGCTCTTTTTAAAAAGAATGTAAGGTATCTTTCGCCTTTTTTAC
ATGAATCCTAAGCAAGCGCCAGACTCTTCCACGCCAACCCGCAATCTGAC
ACTGCCTAATTTCGAGCTTAAGTCAAGATTAAGGCCATAAATTACATTCA
ATTTGCCAGGCGGCGTAAGAAGGCCGACAATGTATGTAACAATAAAATCT
TTTTCTTTTTCAGCTTTTGATGACTTATTTGACGATGATGATTTGGCATG
AATAATTTATATTAAAATTGCCTACTGAATCGTATGAAATGATCATTTTT
ATGTCATTTGGATATTTTATTTATTCTGAGATTCTTTTCTTCTTGTAAAT
ATATTAAAAATTAACAAAAATCTTGTTTGATCCTGATAAAGTTTTTATGG
GCGGAACCATTGGTTACCTTTACTCTCACAGATTTTCGAAACCAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00002308-exon-sc0000019-1575043694:425754..426012 | TCONS_00002308-exon-sc0000019-1575043694:425754..426012 | Clytia hemisphaerica | exon |
| TCONS_00002308-exon-sc0000019-1575043694:423791..423881 | TCONS_00002308-exon-sc0000019-1575043694:423791..423881 | Clytia hemisphaerica | exon |
| TCONS_00002308-exon-sc0000019-1575043694:423267..423499 | TCONS_00002308-exon-sc0000019-1575043694:423267..423499 | Clytia hemisphaerica | exon |
| TCONS_00002308-exon-sc0000019-1510915933:425754..426012 | TCONS_00002308-exon-sc0000019-1510915933:425754..426012 | Clytia hemisphaerica | exon |
| TCONS_00002308-exon-sc0000019-1510915933:423791..423881 | TCONS_00002308-exon-sc0000019-1510915933:423791..423881 | Clytia hemisphaerica | exon |
| TCONS_00002308-exon-sc0000019-1510915933:423267..423499 | TCONS_00002308-exon-sc0000019-1510915933:423267..423499 | Clytia hemisphaerica | exon |
| TCONS_00002308-exon-sc0000019-1491911889:425754..426012 | TCONS_00002308-exon-sc0000019-1491911889:425754..426012 | Clytia hemisphaerica | exon |
| TCONS_00002308-exon-sc0000019-1491911889:423791..423881 | TCONS_00002308-exon-sc0000019-1491911889:423791..423881 | Clytia hemisphaerica | exon |
| TCONS_00002308-exon-sc0000019-1491911889:423267..423499 | TCONS_00002308-exon-sc0000019-1491911889:423267..423499 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000019 | supercontig | sc0000019:423267..426012 - |
Blast
The following BLAST results are available for this feature:
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