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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00002300 ID=TCONS_00002300|Name=TCONS_00002300|organism=Clytia hemisphaerica|type=transcript|length=781bp
AAACATCCTTTATCGTATAGAACTATAAGTTGATAAATATTGCACTTTCT
GAGTGTATGTAGAGCAGATAAAATGTGTACTGTATTATATTTTTACGTGT
TTTTGATTTTCACATTTTGTTTCGAAGTATCTCATGGAATCGAGCCCAGG
ACTATTCACGTGTCACGTGACATGATGAGTAAAGACACGATCAATTGTGG
TTCAATTCATCAACCATGCTTTTATTTAAATCACGCTATTAACATTTCAC
TGGATGGAGATATCATTTTACTGGATTCACAATATCAATACGTTCGCAAT
GAAACTATTGTAATACCTCATTCTTTGGAAATCTCAAGCTATTGTGGTAA
TACTAGTTTCAACTGTAGTGGAGAAAGGGCTAATGTATTGTTCGAGAGCG
ATCAAAAGATGTTATCTCTTACGTTATTTTCACTATCAGGGAATGTATCT
CTACAACATCTCTCAATTGGATTTCGTCGTTTACTTAACATTTCTCATCC
AGGATCATGGTCCAGGGTTAATATTTCAGTTTTACATTTAAACCCTTCTT
TGAAGAAAGTGAAATTTGTGAAATGTAATTTTGAATGGCCAAAATCACCA
AGATTGGTATTTGTTCAAACTGTTCTGATCGATGGCTATGGGTTTTGCAA
TGTAACATTTACGGCTTGTAGATTCAAAACACCGTTACaccataaaaaaa
taaatgagagAGATTCCCAAATAAAACCATCGAAAGGATCACACGAGGAG
CTAATACCAGAAAGACAAACTGTAATGAAGG Run BLAST on NCBI protein sequence of TCONS_00002300-protein >TCONS_00002300-protein ID=TCONS_00002300-protein|Name=TCONS_00002300-protein|organism=Clytia hemisphaerica|type=polypeptide|length=236bp
MCTVLYFYVFLIFTFCFEVSHGIEPRTIHVSRDMMSKDTINCGSIHQPCF
YLNHAINISLDGDIILLDSQYQYVRNETIVIPHSLEISSYCGNTSFNCSG
ERANVLFESDQKMLSLTLFSLSGNVSLQHLSIGFRRLLNISHPGSWSRVN
ISVLHLNPSLKKVKFVKCNFEWPKSPRLVFVQTVLIDGYGFCNVTFTACR
FKTPLHHKKINERDSQIKPSKGSHEELIPERQTVMK Run BLAST on NCBI transcript from alignment at sc0000019:372494..373839- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00002300 ID=TCONS_00002300|Name=TCONS_00002300|organism=Clytia hemisphaerica|type=transcript|length=1346bp|location=Sequence derived from alignment at sc0000019:372494..373839- (Clytia hemisphaerica)
AAACATCCTTTATCGTATAGAACTATAAGTTGATAAATATTGCACTTTCT
GAGTGTATGTAGAGCAGATAAAATGTGTACTGTATTATATTTTTACGTGT
TTTTGATTTTCACATTTTGTTTCGAAGGTTAGTTTATCTTATTTCTGAAA
ATCATACGTTAACAGTCTCGACTTGAATTGTTGGGTATGTCTAGGGTTTC
AGAAGGTTTTCACATCTTGTCACATCCCTGTATCACAGACCCAGTGGGGG
CTCCACCCACTGCCGAAATTTTGTCCCCGGTTGGATAAAATACTCTACAA
TTTCAGCCCCACAGGAAAATTGAATCTAGTTCCATCCCAATTCATAGTTC
AAATGAGAAAAACATCAAAAAACCATACAAATTTGAAAACAATAGATTTT
CTATCCTCGTTGAGGTTTCGATAGAAATATGGGGAAAGGTTTCACCGGGG
CTGTGAGACAGGAGTGCATTCTCTGTATATTTATTGCCACTTTAGAAGAG
GTGGAGGAAGGGAACGATGGAAAGGCCAAAGCAAAAGTTGCCATTCAAAC
CAAATTCTGCTTTAAGTCACCTTGAAAAAGTCTCTATATTTAAACTATCA
TTACCACTTTGAAAAAGGAGCCGCAGCAGCTCCTAAAAATAATATTGTCA
AAAAATATTGTACTGTTAATGCTCAAATTTCTTACTTCTTAGTATCTCAT
GGAATCGAGCCCAGGACTATTCACGTGTCACGTGACATGATGAGTAAAGA
CACGATCAATTGTGGTTCAATTCATCAACCATGCTTTTATTTAAATCACG
CTATTAACATTTCACTGGATGGAGATATCATTTTACTGGATTCACAATAT
CAATACGTTCGCAATGAAACTATTGTAATACCTCATTCTTTGGAAATCTC
AAGCTATTGTGGTAATACTAGTTTCAACTGTAGTGGAGAAAGGGCTAATG
TATTGTTCGAGAGCGATCAAAAGATGTTATCTCTTACGTTATTTTCACTA
TCAGGGAATGTATCTCTACAACATCTCTCAATTGGATTTCGTCGTTTACT
TAACATTTCTCATCCAGGATCATGGTCCAGGGTTAATATTTCAGTTTTAC
ATTTAAACCCTTCTTTGAAGAAAGTGAAATTTGTGAAATGTAATTTTGAA
TGGCCAAAATCACCAAGATTGGTATTTGTTCAAACTGTTCTGATCGATGG
CTATGGGTTTTGCAATGTAACATTTACGGCTTGTAGATTCAAAACACCGT
TACACCATAAAAAAATAAATGAGAGAGATTCCCAAATAAAACCATCGAAA
GGATCACACGAGGAGCTAATACCAGAAAGACAAACTGTAATGAAGG Coding sequence (CDS) from alignment at sc0000019:372494..373839- >TCONS_00002300 ID=TCONS_00002300|Name=TCONS_00002300|organism=Clytia hemisphaerica|type=CDS|length=1416bp|location=Sequence derived from alignment at sc0000019:372494..373839- (Clytia hemisphaerica)
TATCTCATGGAATCGAGCCCAGGACTATTCACGTGTCACGTGACATGATG
AGTAAAGACACGATCAATTGTGGTTCAATTCATCAACCATGCTTTTATTT
AAATCACGCTATTAACATTTCACTGGATGGAGATATCATTTTACTGGATT
CACAATATCAATACGTTCGCAATGAAACTATTGTAATACCTCATTCTTTG
GAAATCTCAAGCTATTGTGGTAATACTAGTTTCAACTGTAGTGGAGAAAG
GGCTAATGTATTGTTCGAGAGCGATCAAAAGATGTTATCTCTTACGTTAT
TTTCACTATCAGGGAATGTATCTCTACAACATCTCTCAATTGGATTTCGT
CGTTTACTTAACATTTCTCATCCAGGATCATGGTCCAGGGTTAATATTTC
AGTTTTACATTTAAACCCTTCTTTGAAGAAAGTGAAATTTGTGAAATGTA
ATTTTGAATGGCCAAAATCACCAAGATTGGTATTTGTTCAAACTGTTCTG
ATCGATGGCTATGGGTTTTGCAATGTAACATTTACGGCTTGTAGATTCAA
AACACCGTTACACCATAAAAAAATAAATGAGAGAGATTCCCAAATAAAAC
CATCGAAAGGATCACACGAGGAGCTAATACCAGAAAGACAAACTGTAATG
AAGATGTGTACTGTATTATATTTTTACGTGTTTTTGATTTTCACATTTTG
TTTCGAAGTATCTCATGGAATCGAGCCCAGGACTATTCACGTGTCACGTG
ACATGATGAGTAAAGACACGATCAATTGTGGTTCAATTCATCAACCATGC
TTTTATTTAAATCACGCTATTAACATTTCACTGGATGGAGATATCATTTT
ACTGGATTCACAATATCAATACGTTCGCAATGAAACTATTGTAATACCTC
ATTCTTTGGAAATCTCAAGCTATTGTGGTAATACTAGTTTCAACTGTAGT
GGAGAAAGGGCTAATGTATTGTTCGAGAGCGATCAAAAGATGTTATCTCT
TACGTTATTTTCACTATCAGGGAATGTATCTCTACAACATCTCTCAATTG
GATTTCGTCGTTTACTTAACATTTCTCATCCAGGATCATGGTCCAGGGTT
AATATTTCAGTTTTACATTTAAACCCTTCTTTGAAGAAAGTGAAATTTGT
GAAATGTAATTTTGAATGGCCAAAATCACCAAGATTGGTATTTGTTCAAA
CTGTTCTGATCGATGGCTATGGGTTTTGCAATGTAACATTTACGGCTTGT
AGATTCAAAACACCGTTACACCATAAAAAAATAAATGAGAGAGATTCCCA
AATAAAACCATCGAAAGGATCACACGAGGAGCTAATACCAGAAAGACAAA
CTGTAATGAAGATGTGTACTGTATTATATTTTTACGTGTTTTTGATTTTC
ACATTTTGTTTCGAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00002300-exon-sc0000019-1575043694:373713..373839 | TCONS_00002300-exon-sc0000019-1575043694:373713..373839 | Clytia hemisphaerica | exon |
| TCONS_00002300-exon-sc0000019-1575043694:372494..373147 | TCONS_00002300-exon-sc0000019-1575043694:372494..373147 | Clytia hemisphaerica | exon |
| TCONS_00002300-exon-sc0000019-1510915933:373713..373839 | TCONS_00002300-exon-sc0000019-1510915933:373713..373839 | Clytia hemisphaerica | exon |
| TCONS_00002300-exon-sc0000019-1510915933:372494..373147 | TCONS_00002300-exon-sc0000019-1510915933:372494..373147 | Clytia hemisphaerica | exon |
| TCONS_00002300-exon-sc0000019-1491911889:373713..373839 | TCONS_00002300-exon-sc0000019-1491911889:373713..373839 | Clytia hemisphaerica | exon |
| TCONS_00002300-exon-sc0000019-1491911889:372494..373147 | TCONS_00002300-exon-sc0000019-1491911889:372494..373147 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000019 | supercontig | sc0000019:372494..373839 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR012334 | Pectin_lyas_fold |
Blast
The following BLAST results are available for this feature:
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