|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00002299 ID=TCONS_00002299|Name=TCONS_00002299|organism=Clytia hemisphaerica|type=transcript|length=4652bpRun BLAST on NCBI protein sequence of TCONS_00002299-protein >TCONS_00002299-protein ID=TCONS_00002299-protein|Name=TCONS_00002299-protein|organism=Clytia hemisphaerica|type=polypeptide|length=673bp MTQTKEKKEHCSVPLTACCPKKDIESVSITNVSECTDKESVAYSERSSLIRun BLAST on NCBI transcript from alignment at sc0000019:331421..357995- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00002299 ID=TCONS_00002299|Name=TCONS_00002299|organism=Clytia hemisphaerica|type=transcript|length=26575bp|location=Sequence derived from alignment at sc0000019:331421..357995- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000019:331421..357995- >TCONS_00002299 ID=TCONS_00002299|Name=TCONS_00002299|organism=Clytia hemisphaerica|type=CDS|length=26286bp|location=Sequence derived from alignment at sc0000019:331421..357995- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00002299 vs. Swiss-Prot (Human)
Match: ABCG1 (ATP-binding cassette sub-family G member 1 OS=Homo sapiens GN=ABCG1 PE=1 SV=3) HSP 1 Score: 651.744 bits (1680), Expect = 0.000e+0 Identity = 351/626 (56.07%), Postives = 448/626 (71.57%), Query Frame = 1
Query: 397 VDLEFKDLSYDVK----IKKNETKRILKSVNGGFKKGELTAVLGPSGAGKSSLLNILAGYNVSGTISGKVLVNGSERNLRRFRKISCYIMQDDILMPNLTVFESMMVSANLHLKSVLTIDEKHR-VIEDILSCLGLINVRNTYMSEISGGQRKRLAIALELVNNPPVIFLDEPTSGLDSLSAYQCISLMKSLAEGGRTVICTIHQPSAKLFEMFDKLYLLTSGQCIYHGEMKTLVPYFETQNLICPKYHNPADFIIEVASGEYGDRTSDLVKAWR-----IQEKRDELKRMEMGDF------GEGEDVDALLAQQMMVSMMPGCGYKXXXXXXXXXXXXXXQFAVLSKRAMVSIIRDKMFTHLRFISVVMVAILIGLLYLGVGNDGNKVQSNTGCLFFSMLFLMFIALMPTVLTFPLEKLVFIREHLNNWYSLKSYYLAITMADLPFQIVLPVIYCSIVYFMTSQPNDGARYTQYVAITILTCLVAQSIGLLLGAVAPNVPTAVFVAPVTGIPVLLFSGFFVSFDTIPKYMQWLTYISFARYSWEGMLVAIYGNNRGALDCGDEPHRCRFPQSGDVLDAMDIDESALQIAQGKFYFDCVVLGLFFVTLRLITYMVLRYKIKTSAER 2226
V++EF+DLSY V +K K +LK ++G F GEL A++GPSGAGKS+L+NILAGY +G + G VL+NG R+LR FRK+SCYIMQDD+L+P+LTV E+MMVSA+L L+ DE R ++++IL+ LGL++ NT +SGGQRKRLAIALELVNNPPV+F DEPTSGLDS S +Q +SLMK LA+GGR++ICTIHQPSAKLFE+FD+LY+L+ GQC+Y G++ LVPY L CP YHNPADF++EVASGEYGD+ S LV+A R KRD E+ F E + L + S M GC S + S TQF +L KR +SI+RD + THLR S + + +LIGLLYLG+GN+ KV SN+G LFFSMLFLMF ALMPTVLTFPLE VF+REHLN WYSLK+YYLA TMAD+PFQI+ PV YCSIVY+MTSQP+D R+ + A+ +T LVAQS+GLL+GA + ++ A FV PVT IPVLLFSGFFVSFDTIP Y+QW++YIS+ RY +EG++++IYG +R L C D C F +S +L +D++ + K Y D +VLG+FF++LRLI Y VLRYKI+ AER
Sbjct: 75 VNIEFRDLSYSVPEGPWWRKKGYKTLLKGISGKFNSGELVAIMGPSGAGKSTLMNILAGYRETG-MKGAVLINGLPRDLRCFRKVSCYIMQDDMLLPHLTVQEAMMVSAHLKLQEK---DEGRREMVKEILTALGLLSCANTRTGSLSGGQRKRLAIALELVNNPPVMFFDEPTSGLDSASCFQVVSLMKGLAQGGRSIICTIHQPSAKLFELFDQLYVLSQGQCVYRGKVCNLVPYLRDLGLNCPTYHNPADFVMEVASGEYGDQNSRLVRAVREGMCDSDHKRDLGGDAEVNPFLWHRPSEEVKQTKRLKGLRKDSSSMEGC--------HSFSASCLTQFCILFKRTFLSIMRDSVLTHLRITSHIGIGLLIGLLYLGIGNEAKKVLSNSGFLFFSMLFLMFAALMPTVLTFPLEMGVFLREHLNYWYSLKAYYLAKTMADVPFQIMFPVAYCSIVYWMTSQPSDAVRFVLFAALGTMTSLVAQSLGLLIGAASTSLQVATFVGPVTAIPVLLFSGFFVSFDTIPTYLQWMSYISYVRYGFEGVILSIYGLDREDLHC-DIDETCHFQKSEAILRELDVENA-------KLYLDFIVLGIFFISLRLIAYFVLRYKIR--AER 678 The following BLAST results are available for this feature:
BLAST of TCONS_00002299 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.