TCONS_00002291 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00002291
Unique Name	TCONS_00002291
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	2194

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at sc0000019:129706..138035-
coding sequence from alignment at sc0000019:129706..138035-

transcript sequence

>TCONS_00002291 ID=TCONS_00002291|Name=TCONS_00002291|organism=Clytia hemisphaerica|type=transcript|length=2194bp
CTATTATCTTGCAAACGATATCACCTCGTCCTCGTCAGGTCAGGACTTCT
ACAAACACTGCAGACAATAAAATACTTTCCAAAGAAAGCAACACAACAAT
aTACTAGaaacacaagatttttgctCTCAATAAAAGTTACATATCAAAAT
GAGTAGCAggcaaattttatcaaaattgggaTCATTCCAAGAGCAAGCTT
TTGTCAATGGGATTTGGCAAAGTAGTGCTTCACAGAAAACATTTCCAGTT
TACAGTCCTTCCACTGGAGAGTTGGTAGCAAACGTTGCTGATTGTGATGC
AAATGATACCAAGAAAGCAATCGATGTGGCTAATCAAGCTTTCCAACTAT
GGAAAACAACATCTTGTAGGGAACGATCAGCCTTGTTGAAAGATCTGTAT
GAAGGAATGATGAGTAACCAAAAAGATCTGGCAACTATCATGGCCATTGA
ATCAGGGAAGCCAATCTCAGAGGGTATGATGGAAGTCAAATTTGCTGCTT
CATTTTTCGAATGGTATGCCGGTGAAGCTATGCGTATGAATGGTGAAGTG
TTACCCAACGCTGAACCAAATAACCGGCGTATAGTCATCAAGCAACCTGT
TGGTGTCTGTGGTTTGATCACACCTTGGAATTTCCCAATTGGTATGATTA
CTAGAAAGTTGGGTCCAGCTCTTGCAGCTGGTTGCACAGCTGTCCTTAAG
CCATCTGAGGAGACACCTTTAACAGCTTTGGCTTTTGGTAAGATTGCTGA
GGAAGTTGGTATGCCTGCTGGTCTACTCAATATTGTGACTGCATCTCGTG
AGAATACAGACCAAGTTGGAGGAGCTCTTTGTGATAGTGATGTTATCAGG
AAGATCACTTTTACAGGATCAACTCGTGTTGGTAAATTACTGTACGAGAG
ATCCgctcaaaatgtcaaaagaCTTTCCATGGAGCTTGGTGGTAACGCAC
CATTTATTGTTTTTAATTCTGCAAATGCTAAACTAGCTGCCCAAaaagct
gtaatgtcaagattcCGAAACACTGGTCAAACGTGCGTATGTGCTGAACG
TGTCTTTGTACAAGATGAAATTTATGATGAATTTTTggaagaactgaaaa
aatgtgTAGCTGAATTACAACTAGGTGACCCANTGGTTTGATCACTCCTT
GGAATTTCCCAATTGGTATGATTACTAGAAAGTTGGGTCCAGCTCTTGCA
GCTGGTTGCACAGCTGTCCTTAAGCCATCTGAGGAGACACCTTTAACAGC
TTTGGCTTTTGGTAAGATTGCTGAGGAAGTTGGTATGCCTGCTGGTCTAC
TCAATATTGTGACTGCATCTCGTGAGAATACAGACCAAGTTGGAGGAGCT
CTTTGTGATAGTGATGTTATCAGGAAGATCACCTTTACAGGATCAACTCG
TGTTGGTAAATTACTGTACGAGAGATCCgctcaaaatgtcaaaagaCTTT
CCATGGAGCTTGGTGGTAACGCACCATTTATTGTTTTTAATTCTGCAAAT
GCTAAACTAGCTGCCCAAaaagctgtaatgtcaagattcCGAAACACTGG
TCAAACGTGCGTATGTGCTGAACGTGTCTTTGTACAAGATGAAATTTATG
ATGAATTTTTggaagaactgaaaaaatgtgTAGCTGAATTACAACTAGGT
GACCCACTTGATGCATCTACTACCCAATCAGCTGTCATCAATCAAAGAGC
GTTAGATTCAATCCAGGATAAGGTGACTGATGCTAAAGAAAAAGGTGCTT
CGATCGCAGTCGGAGGTAATCTTGCCGAGAGTAAAGGAAGCCTTTATTAT
GAGCCAACCATCATCACAGATTGTAAAATTGATATGAAAGTCTTCAAAGA
AGAAATCTTCGGCCCTGTCATTCCACTTATTAAATTCCAAAGTGAATCTG
TTGGAGTTTTAATGGCAAATGCTCATTCTACTGGTTTAGCTGGATATATC
ATGTCCAGAGATATGGCTCAAGTATGGAGAGTTTCTGAAGCACTTGAAGT
TGGTATGGTAGGTGTTAATGATCAAGCTATTTCTTGTGATATCATACCTT
TTGGTGGAGTTAAAGAATCTGGTTTGGGAAGAGAAGGTTCTGTTCATGGT
TTGAATGATTATACTGAACTCAAGTATATTCATTTCGGATTAGAGTAACT
TTCATTTTGAAACGAATTACATATGATGATATGAGATTATTACA

Run BLAST on NCBI

protein sequence of TCONS_00002291-protein

>TCONS_00002291-protein ID=TCONS_00002291-protein|Name=TCONS_00002291-protein|organism=Clytia hemisphaerica|type=polypeptide|length=330bp
MSSRQILSKLGSFQEQAFVNGIWQSSASQKTFPVYSPSTGELVANVADCD
ANDTKKAIDVANQAFQLWKTTSCRERSALLKDLYEGMMSNQKDLATIMAI
ESGKPISEGMMEVKFAASFFEWYAGEAMRMNGEVLPNAEPNNRRIVIKQP
VGVCGLITPWNFPIGMITRKLGPALAAGCTAVLKPSEETPLTALAFGKIA
EEVGMPAGLLNIVTASRENTDQVGGALCDSDVIRKITFTGSTRVGKLLYE
RSAQNVKRLSMELGGNAPFIVFNSANAKLAAQKAVMSRFRNTGQTCVCAE
RVFVQDEIYDEFLEELKKCVAELQLGDPXV

Run BLAST on NCBI

transcript from alignment at sc0000019:129706..138035-

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00002291 ID=TCONS_00002291|Name=TCONS_00002291|organism=Clytia hemisphaerica|type=transcript|length=8330bp|location=Sequence derived from alignment at sc0000019:129706..138035- (Clytia hemisphaerica)
CTATTATCTTGCAAACGATATCACCTCGTCCTCGTCAGGTCAGGACTTCT
ACAAACACTGCAGACAATAAAATACTTTCCAAAGAAAGCAACACAACAAT
GTGAGTTATCTCTAATTTCATATTTCACAATTGTAATATTGATTCTGTTT
TTAATCAATCAGTACAGTAATGCACAGTCACCCATCCCATCAATTTTTAA
GGTATTTTTTAAACAAAAAAAACGTGGACAGAAAAATGGGCAAAGGTTTT
TCTTGATGGGGAATTTTATCTAGTGTAAAGCTATTTTGATCACAATTTTG
TGTGAGGAGTTTGGAAGTTGAATGCAAAACGTGGATGCAGGATAGAAGAT
AAGATGATTTTTTATGTTTTGACTTATTTGGGGGCCGTCGACAAACGACT
TTCCTTTTTTTAACGGCCTGAGGCCGTGAAGGTTCAGACCCCCTCCCCCC
CTACGTCTTAGCGGCCAAATAAATCTTCAAAAGTAAATACTTTCACTGGT
CCATGGTAGCCATTCCAAGTTTGCTTGTTTTTTATTTGACGCTTATCAAA
ATCTTCAATTTTAGGTTAAGCAATTGTTCTTTGTGTAGTTGAGCTATAAA
ATTAATTATCTTTGAGTAATTTAGAGCTTTCTTTTAGCTTTCCAACCATA
TACAATATGCAGGTGTAATATTCTACACTTTTGTCTAAAAATTCGTTTCA
ACTAAGGCCATTTTTAGAAAAATTAGATCTGCGGGACACAAAAAATTTCA
CAACTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNAGAAATCCAATGGTGCTACTCTCTGAAATTAATTCTTTCATTAA
AGTTATTATTTTTTACTTTTCATACTTTGACAAGCATTTTCAGCCTGAAA
ATGAGGACCAGAATTATAGAGAGTGATACCACTGAAAAATTTGACCCTTT
TTTAGCCTAAAACAGTTATTTATATGCCATGGGGAATTTTTCCTCCGCAG
CGCTTATAGGTAGGTTCAGCAATTTTAACTTCCGCTTTATGACAGTTTTT
ATTGTTTTTTTGCAATGCAATTTCATTTCTTCCTTGAAGTGTTAGCAAGC
CATTACAAAAAGAATTTGATCAAAGTCTGCAGTCAAAATGAAGATATCTG
GAATATCTTGACTCAATACAAAAGCTTGAATTTTCAATTTTCGCAGCTTA
TTTCGGTGCCATTTTATATGCCATTTCTGGGCTAAATTGTCAACCTCAAA
TGTCTAGAGCGGTGCTATTTTAGCGGAACCAAAATCTCAATATCTCCGGA
ACCGCTTATCATTAAGAGGTGTATGACCCCTCATTTTTTTTTTTTTTCAA
ACTCTACAAGATGAACTAGGTTTGATTGCCACCAGAATAGTTTCAATTTG
ACCCTGGAATGGCTATCCATGGCCGCCATGTTCTTTCGATTCGTAATCCT
CAAAAACATGTGGTTTTGACCCGTGACCTTTCAATTTTAAAACTCCAAGC
CCCGCAGCAAGTCAGGGCGGGATGGGTGGAGCAAGGAGTCAACTGAGGCA
GTGGGAAAAATTGCCGACTTTCGTCACGTGACCAGTCATTTTTCTCGTCG
AAGCATTAATTGGTAATCGGGAATAAGGTGAATGTCGTGTGGTTGCTTTG
GTCTTAGCCTTTCTTCACATGTTTCTACTTTTTGGACTGATGAAATTTTT
AAGTGAGACTTTCCCTTTTTTTAAAAACTTTTTTAACGGCATTGCAGTGA
CCCCCTCCCACCCATTACGGCCAGAAGCCGTTAAAAAAAGGAAAATCGTT
TGTCGACGTCCCCTTGGATCATTGCAAAAATGTTTTATGAAAAAAAAAAC
ATCCTTTAAGGAGCCCCCCAGCGGACCTTCAATTCACGCAATCACGCAAA
TCTTTTTCCCAAATTCACGCATTCACGCAATGTTTTTCTGCAATTCACGC
AATTTTTCTTCACGCAAAGCTTTCCAATTCATGCATTCACGCAGTTTTTC
TTTAATTTTCACGCATTCACGCAAGTGAAAAAGCCCATTCACACACTCAC
GCAAACCGCTGGCTGGGGGCCCCTTCAAGCAAGACGGTACCAATAGACCT
TTTTTCAAAGAGGCCACCCTGTTGAAAAAATTTTGTAGTCCATCAAAAAA
AACAATGATAAAACCATGCATAATTATTACAATATGCATGATACAGTAAT
TATGCATGGCTCTTTCATTGATAATGATCAATAATAATTGAAGATGGTTA
GTTACCACAATATCGATTTTATTATCGGTGATCGAATACTCACTCGACTC
CAGATACCAGATGGCATTTTCTTCGACCATTTACATTTTCAATTTGTTCA
ATTATTTTGATTACTTTTCGATTCTTTCTATCATATTTGAATACCTTCGA
TTGTATCAAATACCTTTGATTTTGTCAAATATGTTTCCTTTAGCAGCGCA
TTTTTGAATCCGACCCCCCTAATAACTGCTATGAAAAAAAATTCTATGTT
TACAAACATTTCCCTCTCCAATTTGAACAATAAACTATTGCAAGAAATCT
CGTAACAAAACATCTAACAAGATGACTATATATAATGTCGAGATGTCAAT
TAATGTGATCAAAAAAGTGTGAGTTTTAAAAATAATTACCTCTATTATTC
TGAATCTGTTGCTCGTGTTCAAAAAACGTTAACAATTTTGCCATAAAAAT
TATGTTTAGTATAAGAAGCAATTATTGTTATTTGGTTCAATTGGTTCAGT
GTATCAAATCTTCCAGTTTAGTCGACACTTTGGTATCTTCATTGCGTCAC
AGCGAAAGATTTGTTTTTATTTTAGTTTGTATCTTTGAAAGACCCCATCG
GATTTAGGCAGGGCTGTCGGATTTAGGACCACTCACTGTACTTTTTTTAG
ACCTAATTCGCTTTTCAGCCCCTAGGGGCCAGTAGGGCCAGACTTTTTCA
TTTCAATCACTTCAAATGGATAGACCAGGGACTGAACTATCAGAAATTAT
TATTTTGAGCAGAAACAAACTCCCCGGAACAGGTTAGATGGCTCTAAAAT
ACCCCTAAAATCAAACTTGCAGTGTTTTTGTGACGTCATAACTCCAGCTA
CCATTTTGAAAATATGTATAGTTTACCAGCCAATAGTTTCAGAATCACCA
ACAAACAATTCCTCATTTTGATTTGGGAAAGCATGGTTTTATATCAAAAA
ACTTTTTAAGTGCAATGCCAAAAATGTCAAAAACTTCAAATTGACATAAA
TCCGCCATTATGGATTTTCAGACCAAAATATTTTGGGATTTTACTCAGTT
CATTGTACTTTAAAACAAATCCAAAAATGAAAACAATCTAAGTTTCAAAC
TATTGGACCTGCCCACTCTTAAAAAAACTGGCTCTTAGCCCTTAGCAAGG
CTGCAATCAAAAACTTAAAGTTCTCTTGTAAGTCTTTTATAGCATCCAAA
CATCATTTGGCCTTTAAGGGAGGTTGGCTAGAAGGTAATGATGCTGCACT
ACAAAAAAAAAGAGAAAAGAAATTCATAAAAAAGCATAAAAAAAGACTAC
GAATTTTAGAGAAAGTCTGTCTCAATATAATTTGCAGCGGAGACAATAAG
AGGCTGTAACTTTTGATAGAATTTGAATTAGATAGCGGTTTTGTGGTCGT
TAAAAAGATAATCCAAAATGGAATATCATCATAAAAGAAAAACATTTAAA
AAATGAAAAAACGAAGATGAAAAATGAAGAAGAAGCAAATCAACTTCTTG
TATATAGAATAATGCTATGATCTTCATTTTTATATCAGAAATTCTTGAAT
CTTAGAACACCTTTTGTAAATGCGAAAAAAAATAATCATTCAATTAAAAA
TTTGCCCCGGTTGACTTAAAAAAGGGCTCTTTTTTGTTGTTTTTTCACAT
TAATGATGCTCTAAGATCTAAGAATCACTCGTGTGAAAATGATAATCATA
GCACAATTATTGAAGAAGCTGATTTTCTTCTTCTTCATTTTCAATCTTCA
TCTCCTATTTGTCGATATTTTTTGAGTTTTTTCTTTATGATATTATTCCA
CTCCTGTTTGTTGTTTCAACAGAACAAGCACAAAATTGAAATGTATTGAA
ACAGACTTTAGTAATGAAACTTAAAAAATCACTTTCAGTAGCTTTCCATA
AGGAGGGAAGATTCTTGAAAATACTGCTTCAAAGCTATAAAAATAGACCT
ATAGACACGATTGTTTTTCTATTTCAGATTCAAATTCAGTACATCAAAAC
CATCAACCACATTAATTTTCCATTTGTAAACTGAGCATCATTTTTTTTCT
ATTTAAGATACTAGAAACACAAGATTTTTGCTCTCAATAAAAGTTACATA
TCAAAATGAGTAGCAGGCAAATTTTATCAAAATTGGGATCATTCCAAGAG
CAAGCTTTTGTCAATGGGATTTGGCAAAGTAGTGCTTCACAGAAAACATT
TCCAGTTTACAGTCCTTCCACTGGAGAGGTGAGTAATCAATGTTATGTTA
AAAAACGCTTCCTTCCTCTAGTGCTCTAGTGGTACCTGTCAAATTAAATT
TTGCCTTGACTAGTCAATTTTGCCTTGACTAGTCAATTTTGCCTTGATTA
GTCAATTTTGCCTTGATTAGTCAATTTTGAGGAAACATTTTTTCTTGTTG
TTGACCTCTACCCATCTCTAAGATCAAGTAGCAAGTATCGTCAAATCCCT
TCAGAGATCTTTCATTTGTTTTTCTGTCCATGTGCACCAGTATCACAACA
TTAGTAGGTGTATGTTTTACCACTGAAACCCTGAAAGCCTGAAACCCTGA
AACATAATGTTCTTCACAAATAAATTTCATTTTCTTTTCCATTCAATTCA
GTTGGTAGCAAACGTTGCTGATTGTGATGCAAATGATACCAAGAAAGCAA
TCGATGTGGCTAATCAAGCTTTCCAACTATGGAAAACAACATCTTGTAGG
GAACGATCAGCCTTGTTGAAAGATCTGTATGAAGGAATGATGAGTAACCA
AAAAGATCTGGCAACTATCATGGCCATTGAATCAGGTACACGCTTTCTTT
TAATAAGAATGGGTAAATCCATTTCATCATCTGTCATCATGGATATTCTT
AACTTTTTCGGGAAAATCATCCTAAAATATTCTTACATTATTCTTAGGTT
AGGATCCTAATTCAGACTAGATTTAACATTTAGAACATACGTCTCGAGTA
TAAAATAGCATTTTTGTGAAAGGAGTTAGCCTTACTTGGGGGTAATATTG
ACAATTTATAATTGAAAATGCTCTAAAAAAGGCTTTCTTATAGCTTGAGT
AGCAAAATTCCATGATGGTGATATTCTTAACATTATTCTTTAATTTTTGG
CCGTTTTCATCTTGAACATTCTTATAAAAGCGTATTCTTATAAAAAAGGG
TGTACCCAAAGCATTTTAATTTTATTCATTGGAAATTTATTTCTCCGTAA
GGTGCTCATTGGTAGCTTTGCGATATTGGGACTTCTACTGACAAAGAATC
ATTTTTCCTGCTTCCTTTTTTTCTTATTTCCCAAATTGCAGAAATTGCAT
TTTGTATCTGGTTCAAAAAGTTATACCCGAAGGCTAGAGTCGAATCTCAT
ATGTTGAATTGAGCTCACTTTTTTATATACATTAAGCGACCAGCTTTGTT
TTTATACAAACGCTGGATTGGAAATATCATTTCCCGGCAGAATTCGAAAA
AGTTTAAAATGCGAAAACAAAGAAAGTACCAGAAAAGCGGTACATCTGAA
AAGCGGTGCGAATTTTAAGGCTTCACTTATTCTTGCTTGGGACAGGTTGA
AGTGATGATTCACCTCTGTCATTCAGCTTGAAACTCGATGGTCAGTCTTT
TAGTTACCAGTAGTAATGCAGTGTTTTTCATTATGGTCAGTTTTTGTCTT
TTAGTTACCAGTAGCAATGCAGTGTTATTCATTTCATTATATCAAAATAT
CTTTTGATTAAAACAAAAATTTAGTTTTAAAAATATAGTTTAGTAAACTA
TATCATTTTTATGAACCTGATGATGGTATGAACACCGAAAAACTTCGAGA
AAAATTGTTTCATGAATTTTTAAATTTTTGTTATAATCCAATATGACATG
GCACACTTTGACACACAAAATATCTTTGTTATATTATTTAGGGAAGCCAA
TCTCAGAGGGTATGATGGAAGTCAAATTTGCTGCTTCATTTTTCGAATGG
TATGCCGGTGAAGCTATGCGTATGAATGGTGAAGTGTTACCCAACGCTGA
ACCAAATAACCGGCGTATAGTCATCAAGCAACCTGTTGGTGTCTGTGGTT
TGATCACACCTTGGAATTTCCCAATTGGTATGATTACTAGAAAGTTGGGT
CCAGCTCTTGCAGCTGGTTGCACAGCTGTCCTTAAGCCATCTGAGGAGAC
ACCTTTAACAGCTTTGGCTTTTGGTAAGATTGCTGAGGAAGTTGGTATGC
CTGCTGGTCTACTCAATATTGTGACTGCATCTCGTGAGAATACAGACCAA
GTTGGAGGAGCTCTTTGTGATAGTGATGTTATCAGGAAGATCACTTTTAC
AGGATCAACTCGTGTTGGTAAATTACTGTACGAGAGATCCGCTCAAAATG
TCAAAAGACTTTCCATGGAGCTTGGTGGTAACGCACCATTTATTGTTTTT
AATTCTGCAAATGCTAAACTAGCTGCCCAAAAAGCTGTAATGTCAAGATT
CCGAAACACTGGTCAAACGTGCGTATGTGCTGAACGTGTCTTTGTACAAG
ATGAAATTTATGATGAATTTTTGGAAGAACTGAAAAAATGTGTAGCTGAA
TTACAACTAGGTGACCCANTGGTTTGATCACTCCTTGGAATTTCCCAATT
GGTATGATTACTAGAAAGTTGGGTCCAGCTCTTGCAGCTGGTTGCACAGC
TGTCCTTAAGCCATCTGAGGAGACACCTTTAACAGCTTTGGCTTTTGGTA
AGATTGCTGAGGAAGTTGGTATGCCTGCTGGTCTACTCAATATTGTGACT
GCATCTCGTGAGAATACAGACCAAGTTGGAGGAGCTCTTTGTGATAGTGA
TGTTATCAGGAAGATCACCTTTACAGGATCAACTCGTGTTGGTAAATTAC
TGTACGAGAGATCCGCTCAAAATGTCAAAAGACTTTCCATGGAGCTTGGT
GGTAACGCACCATTTATTGTTTTTAATTCTGCAAATGCTAAACTAGCTGC
CCAAAAAGCTGTAATGTCAAGATTCCGAAACACTGGTCAAACGTGCGTAT
GTGCTGAACGTGTCTTTGTACAAGATGAAATTTATGATGAATTTTTGGAA
GAACTGAAAAAATGTGTAGCTGAATTACAACTAGGTGACCCACTTGATGC
ATCTACTACCCAATCAGCTGTCATCAATCAAAGAGCGTTAGATTCAATCC
AGGATAAGGTGACTGATGCTAAAGAAAAAGGTGCTTCGATCGCAGTCGGA
GGTAATCTTGCCGAGAGTAAAGGAAGCCTTTATTATGAGCCAACCATCAT
CACAGATTGTAAAATTGATATGAAAGTCTTCAAAGAAGAAATCTTCGGCC
CTGTCATTCCACTTATTAAATTCCAAAGTGAATCTGTTGGAGTTTTAATG
GCAAATGCTCATTCTACTGGTTTAGCTGGATATATCATGTCCAGAGATAT
GGCTCAAGTATGGAGAGTTTCTGAAGCACTTGAAGTTGGTATGGTAGGTG
TTAATGATCAAGCTATTTCTTGTGATATCATACCTTTTGGTGGAGTTAAA
GAATCTGGTTTGGGAAGAGAAGGTTCTGTTCATGGTTTGAATGATTATAC
TGAACTCAAGTATATTCATTTCGGATTAGAGTAACTTTCATTTTGAAACG
AATTACATATGATGATATGAGATTATTACA

Coding sequence (CDS) from alignment at sc0000019:129706..138035-

>TCONS_00002291 ID=TCONS_00002291|Name=TCONS_00002291|organism=Clytia hemisphaerica|type=CDS|length=2979bp|location=Sequence derived from alignment at sc0000019:129706..138035- (Clytia hemisphaerica)
GGAAGCCAATCTCAGAGGGTATGATGGAAGTCAAATTTGCTGCTTCATTT
TTCGAATGGTATGCCGGTGAAGCTATGCGTATGAATGGTGAAGTGTTACC
CAACGCTGAACCAAATAACCGGCGTATAGTCATCAAGCAACCTGTTGGTG
TCTGTGGTTTGATCACACCTTGGAATTTCCCAATTGGTATGATTACTAGA
AAGTTGGGTCCAGCTCTTGCAGCTGGTTGCACAGCTGTCCTTAAGCCATC
TGAGGAGACACCTTTAACAGCTTTGGCTTTTGGTAAGATTGCTGAGGAAG
TTGGTATGCCTGCTGGTCTACTCAATATTGTGACTGCATCTCGTGAGAAT
ACAGACCAAGTTGGAGGAGCTCTTTGTGATAGTGATGTTATCAGGAAGAT
CACTTTTACAGGATCAACTCGTGTTGGTAAATTACTGTACGAGAGATCCG
CTCAAAATGTCAAAAGACTTTCCATGGAGCTTGGTGGTAACGCACCATTT
ATTGTTTTTAATTCTGCAAATGCTAAACTAGCTGCCCAAAAAGCTGTAAT
GTCAAGATTCCGAAACACTGGTCAAACGTGCGTATGTGCTGAACGTGTCT
TTGTACAAGATGAAATTTATGATGAATTTTTGGAAGAACTGAAAAAATGT
GTAGCTGAATTACAACTAGGTGACCCANTGGTTTGATTGGTAGCAAACGT
TGCTGATTGTGATGCAAATGATACCAAGAAAGCAATCGATGTGGCTAATC
AAGCTTTCCAACTATGGAAAACAACATCTTGTAGGGAACGATCAGCCTTG
TTGAAAGATCTGTATGAAGGAATGATGAGTAACCAAAAAGATCTGGCAAC
TATCATGGCCATTGAATCAGATGAGTAGCAGGCAAATTTTATCAAAATTG
GGATCATTCCAAGAGCAAGCTTTTGTCAATGGGATTTGGCAAAGTAGTGC
TTCACAGAAAACATTTCCAGTTTACAGTCCTTCCACTGGAGAGGGAAGCC
AATCTCAGAGGGTATGATGGAAGTCAAATTTGCTGCTTCATTTTTCGAAT
GGTATGCCGGTGAAGCTATGCGTATGAATGGTGAAGTGTTACCCAACGCT
GAACCAAATAACCGGCGTATAGTCATCAAGCAACCTGTTGGTGTCTGTGG
TTTGATCACACCTTGGAATTTCCCAATTGGTATGATTACTAGAAAGTTGG
GTCCAGCTCTTGCAGCTGGTTGCACAGCTGTCCTTAAGCCATCTGAGGAG
ACACCTTTAACAGCTTTGGCTTTTGGTAAGATTGCTGAGGAAGTTGGTAT
GCCTGCTGGTCTACTCAATATTGTGACTGCATCTCGTGAGAATACAGACC
AAGTTGGAGGAGCTCTTTGTGATAGTGATGTTATCAGGAAGATCACTTTT
ACAGGATCAACTCGTGTTGGTAAATTACTGTACGAGAGATCCGCTCAAAA
TGTCAAAAGACTTTCCATGGAGCTTGGTGGTAACGCACCATTTATTGTTT
TTAATTCTGCAAATGCTAAACTAGCTGCCCAAAAAGCTGTAATGTCAAGA
TTCCGAAACACTGGTCAAACGTGCGTATGTGCTGAACGTGTCTTTGTACA
AGATGAAATTTATGATGAATTTTTGGAAGAACTGAAAAAATGTGTAGCTG
AATTACAACTAGGTGACCCANTGGTTTGATTGGTAGCAAACGTTGCTGAT
TGTGATGCAAATGATACCAAGAAAGCAATCGATGTGGCTAATCAAGCTTT
CCAACTATGGAAAACAACATCTTGTAGGGAACGATCAGCCTTGTTGAAAG
ATCTGTATGAAGGAATGATGAGTAACCAAAAAGATCTGGCAACTATCATG
GCCATTGAATCAGATGAGTAGCAGGCAAATTTTATCAAAATTGGGATCAT
TCCAAGAGCAAGCTTTTGTCAATGGGATTTGGCAAAGTAGTGCTTCACAG
AAAACATTTCCAGTTTACAGTCCTTCCACTGGAGAGGGAAGCCAATCTCA
GAGGGTATGATGGAAGTCAAATTTGCTGCTTCATTTTTCGAATGGTATGC
CGGTGAAGCTATGCGTATGAATGGTGAAGTGTTACCCAACGCTGAACCAA
ATAACCGGCGTATAGTCATCAAGCAACCTGTTGGTGTCTGTGGTTTGATC
ACACCTTGGAATTTCCCAATTGGTATGATTACTAGAAAGTTGGGTCCAGC
TCTTGCAGCTGGTTGCACAGCTGTCCTTAAGCCATCTGAGGAGACACCTT
TAACAGCTTTGGCTTTTGGTAAGATTGCTGAGGAAGTTGGTATGCCTGCT
GGTCTACTCAATATTGTGACTGCATCTCGTGAGAATACAGACCAAGTTGG
AGGAGCTCTTTGTGATAGTGATGTTATCAGGAAGATCACTTTTACAGGAT
CAACTCGTGTTGGTAAATTACTGTACGAGAGATCCGCTCAAAATGTCAAA
AGACTTTCCATGGAGCTTGGTGGTAACGCACCATTTATTGTTTTTAATTC
TGCAAATGCTAAACTAGCTGCCCAAAAAGCTGTAATGTCAAGATTCCGAA
ACACTGGTCAAACGTGCGTATGTGCTGAACGTGTCTTTGTACAAGATGAA
ATTTATGATGAATTTTTGGAAGAACTGAAAAAATGTGTAGCTGAATTACA
ACTAGGTGACCCANTGGTTTGATTGGTAGCAAACGTTGCTGATTGTGATG
CAAATGATACCAAGAAAGCAATCGATGTGGCTAATCAAGCTTTCCAACTA
TGGAAAACAACATCTTGTAGGGAACGATCAGCCTTGTTGAAAGATCTGTA
TGAAGGAATGATGAGTAACCAAAAAGATCTGGCAACTATCATGGCCATTG
AATCAGATGAGTAGCAGGCAAATTTTATCAAAATTGGGATCATTCCAAGA
GCAAGCTTTTGTCAATGGGATTTGGCAAAGTAGTGCTTCACAGAAAACAT
TTCCAGTTTACAGTCCTTCCACTGGAGAG

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_001215	XLOC_001215	Clytia hemisphaerica	gene

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00002291-protein	TCONS_00002291-protein	Clytia hemisphaerica	polypeptide

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00002291-exon-sc0000019-1575043694:137936..138035	TCONS_00002291-exon-sc0000019-1575043694:137936..138035	Clytia hemisphaerica	exon
TCONS_00002291-exon-sc0000019-1575043694:133108..133278	TCONS_00002291-exon-sc0000019-1575043694:133108..133278	Clytia hemisphaerica	exon
TCONS_00002291-exon-sc0000019-1575043694:132551..132734	TCONS_00002291-exon-sc0000019-1575043694:132551..132734	Clytia hemisphaerica	exon
TCONS_00002291-exon-sc0000019-1575043694:129706..131444	TCONS_00002291-exon-sc0000019-1575043694:129706..131444	Clytia hemisphaerica	exon
TCONS_00002291-exon-sc0000019-1510915933:137936..138035	TCONS_00002291-exon-sc0000019-1510915933:137936..138035	Clytia hemisphaerica	exon
TCONS_00002291-exon-sc0000019-1510915933:133108..133278	TCONS_00002291-exon-sc0000019-1510915933:133108..133278	Clytia hemisphaerica	exon
TCONS_00002291-exon-sc0000019-1510915933:132551..132734	TCONS_00002291-exon-sc0000019-1510915933:132551..132734	Clytia hemisphaerica	exon
TCONS_00002291-exon-sc0000019-1510915933:129706..131444	TCONS_00002291-exon-sc0000019-1510915933:129706..131444	Clytia hemisphaerica	exon
TCONS_00002291-exon-sc0000019-1491911889:137936..138035	TCONS_00002291-exon-sc0000019-1491911889:137936..138035	Clytia hemisphaerica	exon
TCONS_00002291-exon-sc0000019-1491911889:133108..133278	TCONS_00002291-exon-sc0000019-1491911889:133108..133278	Clytia hemisphaerica	exon
TCONS_00002291-exon-sc0000019-1491911889:132551..132734	TCONS_00002291-exon-sc0000019-1491911889:132551..132734	Clytia hemisphaerica	exon
TCONS_00002291-exon-sc0000019-1491911889:129706..131444	TCONS_00002291-exon-sc0000019-1491911889:129706..131444	Clytia hemisphaerica	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000019	supercontig	sc0000019:129706..138035 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
24.1463	21.6293	4.61395	1.70266	8.82156	6.41858	24.6099	23.4913	31.5531	24.327	18.506	24.6755	38.8101	36.5643	51.7692	76.9358	48.2748	40.9401	20.8802	18.4897	28.582	30.622	40.4527	37.8952	12.2428	11.1662	17.4982	16.3468	80.8578	51.9633

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR016162	Ald_DH_N
IPR015590	Aldehyde_DH_dom
IPR029510	Ald_DH_CS_GLU
IPR016160	Ald_DH_CS_CYS
IPR016161	Ald_DH/histidinol_DH

Vocabulary: **Biological Process**
Term	Definition
GO:0008152	metabolic process
GO:0055114	oxidation-reduction process

Vocabulary: **Molecular Function**
Term	Definition
GO:0016491	oxidoreductase activity

GO Annotation

GO Assignments

This transcript is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008152	metabolic process
biological_process	GO:0055114	oxidation-reduction process
molecular_function	GO:0016491	oxidoreductase activity

Blast

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BLAST of TCONS_00002291 vs. Swiss-Prot (Human)
Match: SSDH (Succinate-semialdehyde dehydrogenase, mitochondrial OS=Homo sapiens GN=ALDH5A1 PE=1 SV=2)

HSP 1 Score: 342.813 bits (878), Expect = 6.102e-108
Identity = 168/335 (50.15%), Postives = 238/335 (71.04%), Query Frame = 1

Query: 1138 LITPWNFPIGMITRKLGPALAAGCTAVLKPSEETPLTALAFGKIAEEVGMPAGLLNIVTASRENTDQVGGALCDSDVIRKITFTGSTRVGKLLYERSAQNVKRLSMELGGNAPFIVFNSANAKLAAQKAVMSRFRNTGQTCVCAERVFVQDEIYDEFLEELKKCVAE-LQLGDPLDASTTQSAVINQRALDSIQDKVTDAKEKGASIAVGGNLAESKGSLYYEPTIITDCKIDMKVFKEEIFGPVIPLIKFQSESVGVLMANAHSTGLAGYIMSRDMAQVWRVSEALEVGMVGVNDQAISCDIIPFGGVKESGLGREGSVHGLNDYTELKYIHFG 2139
            +ITPWNFP  MITRK+G ALAAGCT V+KP+E+TP +ALA  ++A + G+P+G+ N++  SR+N  +VG A+C   ++ KI+FTGST  GK+L   +A +VKR+SMELGG APFIVF+SAN   A   A+ S+FRNTGQTCVC+ +  VQ  I+D F++   + + + L++G+  +  TTQ  +IN++A++ ++ +V DA  KGA++  GG      G  ++EPT++ +   DM    EE FGP+ P+IKF +E   + +ANA   GLAGY  S+D AQ+WRV+E LEVGMVGVN+  IS    PFGGVK+SGLGREGS +G+++Y ELKY+ +G
Sbjct:  200 VITPWNFPSAMITRKVGAALAAGCTVVVKPAEDTPFSALALAELASQAGIPSGVYNVIPCSRKNAKEVGEAICTDPLVSKISFTGSTTTGKILLHHAANSVKRVSMELGGLAPFIVFDSANVDQAVAGAMASKFRNTGQTCVCSNQFLVQRGIHDAFVKAFAEAMKKNLRVGNGFEEGTTQGPLINEKAVEKVEKQVNDAVSKGATVVTGGK-RHQLGKNFFEPTLLCNVTQDMLCTHEETFGPLAPVIKFDTEEEAIAIANAADVGLAGYFYSQDPAQIWRVAEQLEVGMVGVNEGLISSVECPFGGVKQSGLGREGSKYGIDEYLELKYVCYG 533

HSP 2 Score: 298.13 bits (762), Expect = 5.007e-91
Identity = 145/316 (45.89%), Postives = 215/316 (68.04%), Query Frame = 2

Query:  185 FQEQAFVNGIWQSSASQKTFPVYSPSTGELVANVADCDANDTKKAIDVANQAFQLWKTTSCRERSALLKDLYEGMMSNQKDLATIMAIESGKPISEGMMEVKFAASFFEWYAGEAMRMNGEVLPNAEPNNRRIVIKQPVGVCGLITPWNFPIGMITRKLGPALAAGCTAVLKPSEETPLTALAFGKIAEEVGMPAGLLNIVTASRENTDQVGGALCDSDVIRKITFTGSTRVGKLLYERSAQNVKRLSMELGGNAPFIVFNSANAKLAAQKAVMSRFRNTGQTCVCAERVFVQDEIYDEFLEELKKCVAE-LQLGD 1129
             +  +FV G W  +A+  TFPV  P++G  +  VADC   + + A+  A +AF  W+  S +ERS+LL+  Y  M+ N+ DLA I+  ESGKP+ E   E+ ++A F EW++ EA R+ G+++     + R +V+KQP+GV  +ITPWNFP  MITRK+G ALAAGCT V+KP+E+TP +ALA  ++A + G+P+G+ N++  SR+N  +VG A+C   ++ KI+FTGST  GK+L   +A +VKR+SMELGG APFIVF+SAN   A   A+ S+FRNTGQTCVC+ +  VQ  I+D F++   + + + L++G+
Sbjct:   59 LRTDSFVGGRWLPAAA--TFPVQDPASGAALGMVADCGVREARAAVRAAYEAFCRWREVSAKERSSLLRKWYNLMIQNKDDLARIITAESGKPLKEAHGEILYSAFFLEWFSEEARRVYGDIIHTPAKDRRALVLKQPIGVAAVITPWNFPSAMITRKVGAALAAGCTVVVKPAEDTPFSALALAELASQAGIPSGVYNVIPCSRKNAKEVGEAICTDPLVSKISFTGSTTTGKILLHHAANSVKRVSMELGGLAPFIVFDSANVDQAVAGAMASKFRNTGQTCVCSNQFLVQRGIHDAFVKAFAEAMKKNLRVGN 372

The following BLAST results are available for this feature:

BLAST of TCONS_00002291 vs. Swiss-Prot (Human)

BLAST of TCONS_00002291 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
SSDH	6.102e-108	50.15	Succinate-semialdehyde dehydrogenase, mitochondria...	[more]

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TCONS_00002291 (transcript) - C. hemisphaerica