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TCONS_00002285 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002285
Unique NameTCONS_00002285
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1383

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002285 ID=TCONS_00002285|Name=TCONS_00002285|organism=Clytia hemisphaerica|type=transcript|length=1383bp
AAAATATATATTGGCGTTTTTACCACATATCTAGCTTTGCTTGCTGCGTC
AGTCTTTGATACTGATTTCTTTTCCCTTTTCTGGCCTTTTGGCTTTTTTT
AAACTTCCCACTTGCAGTAACAGCCAGCCCAACTCTTCATGTAATGCGGC
TGGTTAGCTCTTCGGGCTGCTACTTCTAGTACGTCGCTCTAACTAATGCC
TTCCGGCTCTGTAgagccaaaatcaaaatcaaaacaaagattttccTTGG
AGTCCGAAGAACTGCCCACCCGTAGTGGTGAATCTTACCAATAGCCGGAA
CCTGTTAAAATCCCTTACAAGATCTCTGACCAGTGACAAAAGGTTGGCTG
ACCCTGGCATAACAACTCCACTACAAATCCTACCAAATCTTTGGAATCAT
GAagctttttatttgcaaaatcaCAGgtaaagaaatctTCACAGATGCAA
GCAAATATGAATTAGTTGATGATGCCTACTACATTGTGAAAGGCAAAATT
GAAGCTTCATCTAATGAAATTGATGAATCAGCCATTGGAGGAAACAAATC
TGCTGAGGGTGGAGATGAGGAAGCTGCTGAAGTCCATGTTGCAATTGTTT
CAAGCCTTGTCAACTCATGCAAACTAGAAGAGAATGTCCCAATTGCTTCc
aagaaagatttcaaaggcaAATTTTCTGCCTATTGTAAAAAGATTACTGG
CTTTGTAAAAGAGGAATCTCCAGACCGCCTTGATCACGTTAAATCGGCAA
TGCAAAAGAAGGCTATGGAAATAATCGGTGACTTCGGTACTTATCAATGG
TATGCTGCTGAAGACGACGGTTTTGATTGCGACGGAGCACCTATCCCACA
TAAAACTATCAATTCTGATAGTAAGAAAGGTGATCAAGTAGGCGATGTTT
GCGAAATTATTGTGTGGAAGGATGGTGTCCGTGAAGAAAAATGTtAAATC
ATTAATCAATCAATGGGGAGAGGCTGGGTCAATGTTAACCAACCATCGGA
CGGGTCGATCGAATTTCATCTAAAAAAGATGATGTACTCAAAAGTCTTTA
TTGATTGAGAGGAAACTACTATTTAGGAATTGCCATATTGTACATTACTT
GAATTGAATACATTCAACGAACTAATAAAATAATCTTTTCTACAATTAAT
TCCGTTGTCAGTTTTAATTATTacaactagtcatagctttcactatcCTA
AATGCCCCCACTGAAAGGTCATGCCATGcacttttaaagcttttaatgct
ttaaagattgaagcataaaaacaatcaggaataattaattggtttttgtt
aattattgattggttgattgattgattgaggcaattgcttgaaaaaataa
tcatattccattaacaaaatacttgaagaattc
Run BLAST on NCBI

transcript from alignment at sc0000019:1034024..1042630+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002285 ID=TCONS_00002285|Name=TCONS_00002285|organism=Clytia hemisphaerica|type=transcript|length=8607bp|location=Sequence derived from alignment at sc0000019:1034024..1042630+ (Clytia hemisphaerica)
AAAATATATATTGGCGTTTTTACCACATATCTAGCTTTGCTTGCTGCGTC AGTCTTTGATACTGATTTCTTTTCCCTTTTCTGGCCTTTTGGCTTTTTTT AAACTTCCCACTTGCAGTAACAGCCAGCCCAACTCTTCATGTAATGCGGC TGGTTAGCTCTTCGGGCTGCTACTTCTAGTACGTCGCTCTAACTAATGCC TTCCGGCTCTGTAgagccaaaatcaaaatcaaaacaaagattttccTTGG AGTCCGAAGAACTGCCCACCCGTAGTGGTGAATCTTACCAATAGCCGGAA CCTGTTAAAATCCCTTACAAGATCTCTGACCAGTGACAAAAGGTTGGCTG ACCCTGGCATAACAACTCCACTACAAATCCTACCAAATCTTTGGAATCAT GAagctttttatttgcaaaatcaCAGGTATGTATTTTCAACCTTTCTTCA TTCTCAtgggtcaaaaatttttccatttcaaccaaaattttGGCTGCTTT ATTACAATCTAAAAGTGGGCTGTGATGGTTTGATATAATTTGGCATATTC TTTCCATGTTCCTGAGCAAAATTCCCAGATTCTTCCTTTCGTTTAAAGTC AAGATATGACTAATCTGATAAGAAAAGTTGAATAAAAAACATCGTTATAT CTAGATGTTTCGGTGTTTCTATCACCATCACGATGATAGTCCTGTGTTGT TGATGTCGAAAATTGATTCATTCAACCAGACATCcccgctcgataggatc gattaTCGGAacagctcgatgacggatcgatatgtgatcgatggattact taacaatccggataggagatcgatagggcggtcatcgaaaaaatgctctg ttcgcatCGCAatgggtgttaaaaatgcatgcgggcggacgggcggttAA AAACATTcccaggttttttttaatcacgccactAACTCAGGGacgggtgg taacgcgagcaaaacaatttttcaatagtCGTCAGaggaattgagaaaaa agctatactttaaaagaacaaattgcttttcccagatttttttccgcatc tccgcacaggaaaatcagcggaaaatttcatgcgggcgggtgacacgaat agaacaatttttcgatgaccgcctagatagcgactccagaagtcatgcaa ctttcgttgacgtcaaaccaaatgtttcatttttccgtgaactttgaacc cttggaacttttcttctatgtatgctaaagcgttccggtttttactaaat gaaagcccgtgatcttagctttccagcggtatataacactgtggacacag gCTAGACGGccaattggtaaaatgccgaacgttttgcaacattttgaaaa ttgtttgccgacgggagaaaatttttttgcaactATCGAaaaacaaatgt gtctggaaacggaggaaaatgtatttggaggctgaaactttgtatgttta tcagaaaaagggtgaggaattcaaaaatcacaatcgctaattctagttct ttcattttcatgtatagtgacacttacttacaaaattaatgacaaaatca taaaatatgatgcctaacaagacaaaagcacgaaaaatatttattatata tacaaaatgtgatgtggatggtgtgaatggataaaaaatggcaccataca gaagcttgcaaggtccctaagagagtggttttagaaagttggaactaatt aattattcaattattattttaatgtcttactgctgcttaatgacaatttt tgacaaaaatattaacagaatcataaaatctgatgcaagaaaagacgaaa acacgaaaaatatttattatacaaaatgtgatgtggatggtgtgaatgga tttAAAatggcaccaatcagaagcttgcaaggtccctaagagagtggttt tagaaggatgaaactaattaatcattcaattgttattttaatgacttaat gacaatttttgacaaaaatattgacagaattacaaaatttcatgtcttac aagagaaaaacaccaaaaatatttagcatgccgaatgtgatgataacatg ATGTAAGTTACATGTGAGTTTACCGTCGTCAACTTACCCgaaaatagatg cggcatgatttcatttaaattcattattcattattttcccaacagcacct tatccaccatttctgctaaccattctctctcaaaataaaaaattttgctt cgcttCAACCCTACGCATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNGGTcacattttctgtaaaaaatcttctttgtttacccgtgTTTA CTCTGGGAAAAAGGTCATGCGTAGAGGGAATCCTGcgtagagacgatttt aacaacaatggaggttgtagttgtaaagaaatatagaaataatgaaattt tgagcaGTTCAtcgaaataatgaaattttcatgcgggtgctttttagaga tgcgggcggccgacggtaaactcacATGTGACTTTCATCGGccatatggc tggatataaaattacaccaatcagaagctcatGAGTTCCCTGAGAaagta gttttagagcgatgtgttttattatatgtaaccatcatataacattacaa acattacaatatgtaatatacctgttatacgtataatatggttttaaata ttttctggtctgcgttatacacggcgcaaactgcgaaagatcgataaaag cacatggttaaattttgatgttcgaaatggttttatatggatgaaattgc ttgagaattatgtttttgataattctttgtgttttccaaacattttcctc tgcaatgacattgattagagtcNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNatttttagtcaaattttt gacactaaaatttgaatatctttacaaccacttatcctctggaggcctat gacccctcattttctttctttttcaaagctctacaatataggatagattt tgaaaaaaaaattaaaacttgaaaaatcttctggagttgctagcctagag gatcgatactcaagattttttgaagcttatgattagttattgATTATTTA TCAATCTTATCAACCCTATCGACTCCTACTCGATTTGCgaaatcgattaa cgattgatgacgaatcggtatactcaattgaaatactagctcgataatgt atcaacgaaggatcgatactcaacactttttaatggctgaatcttccatc gatctcctatccggatcgttaagttaatccatcgatcacatatccaTCCA TCATCGAGCCGTttcgatgatcgatcctatcgagcgcggacgtctggttg aagatagacaggcagctgatgacatcaaaaaagtgaataagtGAAAATTC GAGGGACAAATATTGAGTATTTATTATGAAATCTTTATAGTTTAGAgagt cagaaaaatttactCGGCTTGTTTAAAAATCATTACTGGACGTGTCCgag aataatttattaattgatgACAAGCAAAAGTGAGAAATTgatgttgcaaa atttcaaagtttcatATACCATTCGAAGCGTATtttgatgtagatttcaa attacatcaatcttaataagtaaaaatttgaataagaaaagctcttctat gacgtcatttttgaaaaaatgcttcattttATAAGGTgaaaaaatgcttc attttATAAGGAATTATGATCTCAATTTTCTCAAGTTAGGCTGAGAAATT GAATATNCTCCCTTCCCTTGGAAAGAATTCAGAAGAAATCCCTCTGAACA AAAGTACTTTTGAATGGTTCCACTGTGAACCCTTCATTCGATTCCTAATT GATGCCTAATCATTTCTATttttaggtaaagaaatctTCACAGATGCAAG CAAATATGAATTAGTTGATGATGCCTACTACATTGTGAAAGGCAAAATTG AAGCTTCATCTAATGAAATTGATGAATCAGCCATTGGAGGTACATTTTGT TATTTAATTTTGAATGGGTGTCTGAACAGGGGCTCTTCCAGAACTTTTTT GTACATGGGAGTGGAGGATAGTGTCCAgtgtacagtatatggcccccaaa acggagacggcccccaaaacggaggttgtcattaaaatgaggattctgac ttgtagatttattaGAATtgaacgatttttgtttatttagaaagaatgat ggttatactaaaaAGTNTGGTGTAAATTGTTTTTCGATTTGATgacgttg aaatttgacatttttaggggGTGAGAGGGTCATGATTGACCAAAATCACA TGTAAAAtttaagtcataacttttgaaatctaaatttttacctattgaga ttgattcttttaaatacccttcctaaaaggaaaattatttcataaaCGCC CCTTTTAATGAACGCCCCCTCTAGGCAAGcggcgtttattagaaacttgt gtctttaatacttcaataccagcgttgattgggtttgaaaaggaagattt tagtcatttctcgtaaccagagcagttttcgattcaataattcaataaac gcccccttcttttaaacgcccctcttAAAATCGAAAAACGTAATACAGTA CTTTTTTTCTCGATTATTTCTCCCTTCCCTTGGAAAGAATTCAGAAGAAA TCCCTCTGAACAAAAGTACTTTTGAATGGTTCCACTGTGAACCCTTCATT CGATTCCTAATTGATGCCTAATCATTTCTATttttaggtaaagaaatctT CACAGATGCAAGCAAATATGAATTAGTTGATGATGCCTACTACATTGTGA AAGGCAAAATTGAAGCTTCATCTAATGAAATTGATGAATCAGCCATTGGA GGTACATTTTGTTATTTAATTTTGAATGGGTGTCTGAACAGGGGCTCTTC CAGAACTTTTTTGTACATGGGAGTGGAGGATAGTGTCCAgtgtacagtat atggcccccaaaacggagacggcccccaaaacggaggttgtcattaaaat gaggattctgacttgtagatttattaGAATtgaacgatttttgtttattt agaaagaatgatggttatactaaaaagtgagcatgtttttgatggtttga gacagattcaaaataacatatttgcgtatGAAGgagatattttaacacca aaattagataaaaattgcatataactcactctagctcctttgatattgaa aataagttatgaaaatggggtattggaaactttctacacctaatgacgtg cagaaaatgcagatacatctgtgacttcagaggatgggtaaaagatatag catcttaaaggtcaaccagtattttgggagcctagaatcagcattgataa aaccgaaaattctaaatatgagaaacagcaaaatgtcttggaattccatt cctatcaggttgagttaatagcttatagcaaaaaattaacatcatatata aaaattttcgctgaatcagcaaaaatggcaaattctgtcatttttctgca aaatataggagaaaaatatctttaaagcttaatattttcagtttcagtga agcttttcttctcaaattttcacagctttttcCATTCATGAATgcaacta ttttcaaaagacattgattttcaaaaacttgattaagacgttgttaaatc taaattgtcattttgaaaatttctaaattttcagtttggactttgcaata tcgaacatcttgaaatatttcataaaaatcttaaattttacatCTATCAG GTTGTAAATTTAAGggtaaacacaaatatgttcatagtttttcctcctat taccactgggcttaataatttgattttaactatacctccgttttgggggc cccaaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtccgtt ttgggggccccaaacctgcattttgacaaccaggggtatactgtaaaaaa tttatcaaacaaatttatgcccaaaaccctctaaatcacatttcaaaact acggtcaaaattttgtattgatatcttaaagatatctcgagaaatcgcta aaattgcaaacctctgttttgggggccattagaaaaaagctacctatctt taagcgattgaataatattgttgaaattgaaaattttgaaaaagaactgt cGGGAAATAAaatagagatgttaaagttttgcatgcaagaaaaattcttg taaaacctcttttcccctagctttgagagaaattttaaatttgatcgccg ttgtgggggccacatactgtagtgaaaaatatacaaaatttgccttgtcc cgGGGTGATAAACTGGTTCTGTTTTTGGGTAATTTGGCTCTGTTTGAGAG TAATTTtaaatgtccagggggtcaaaagtcatgtccgggggtaaatttcc aaaaattgttatatcctctaCCCACATTCATGATCCATGtataaaacttc aaatttgGTCAGTTCGTTCCAATATTAAGAGGTTTTTAGTTTCGCCGGAA AggcttgtgatgacgtcatcataaaacTTTCAACCCTCATAACTTTTAAT AGGAAGATTAAGATAAGGCATgctttatacctcaattttcatcagcattt catgctttTTCCGCTgcaaccatcagattttgaatattttcaaaagaaat tgtttgcccagccacctgatgacgtcatctggcaggtggccaggtgacAA AATTTGGTATTACTGAaggttactgtttaaaattaagttttagacccttt aaggatcatctgtgccaaatttcacgattttatcaccatctgaagtattc ttacgtttttatgtgctatCAGACCTCGCTATACATTTTGTGTCACACAT GGTacatttttaataagaaaatatCTCATTTATTTTTCCAGATTCGAAAT AGTCTTGTTTCACCAATATGCCAATTATATTAGTGAGTATCTACCTCATC AAACACAATCCTATCTCATTTTCCCTGTTAGGAAACAAATCTGCTGAGGG TGGAGATGAGGAAGCTGCTGAAGTCCATGTTGCAATTGTTTCAAGCCTTG TCAACTCATGCAAACTAGAAGAGAATGTCCCAATTGCTTCcaagaaagat ttcaaaggcaAATTTTCTGCCTATTGTAAAAAGATTACTGGCTTTGTAAA AGAGGAATCTCCAGACCGCCTTGATCACGTTAAATCGGCAATGCAAAAGA AGGCTATGGAAATAATCGGTGACTTCGGTACTTATCAATGGTATGCTGCT GAAGACGACGGTTTTGATTGCGACGGAGCACCTATCCCACATAAAACTAT CAATTCTGATAGTAAGAAAGGTGATCAAGTAGGCGATGTTTGCGAAATTA TTGTGTGGAAGGATGGTGTCCGTGAAGAAAAATGTGTAAGTTTGACATTT CCTTTGAGTAAATTCTTCGAATACAGTCGAAATAATCTGCTTAATTTTCA TGGCGGGTTTCATTAGGAtttattaccttaagggaagcaATTTTGGCGGA attaattttagcatttttgggTGTCTGACCCGAACATTaattccgcaaaa attagttccgttTAGGTAATCTCCTGCCGTTTGctcaaaatgtatttttg aaCTCAAGATAAAACAACTTTCTCCCTCTCCTGCTTCCTGCGTGCACAAA AAAATTTGAGTGTTCCTTTAttaattctgcaaaattttaaaaatgggCTG GGCTAACTAGGGCTACGTTATTTTCAGAATTAATTTTCTTCGATGCAAGT GATTTCTCTCACGCCTTTCGAACTTTAAACTCCATGATATCGACttattt tgatttcctttttttcagtAAATCATTAATCAATCAATGGGGAGAGGCTG GGTCAATGTTAACCAACCATCGGACGGGTCGATCGAATTTCATCTAAAAA AGATGATGTACTCAAAAGTCTTTATTGATTGAGAGGAAACTACTATTTAG GAATTGCCATATTGTACATTACTTGAATTGAATACATTCAACGAACTAAT AAAATAATCTTTTCTACAATTAATTCCGTTGTCAGTTTTAATTATTacaa ctagtcatagctttcactatcCTAAATGCCCCCACTGAAAGGTCATGCCA TGcacttttaaagcttttaatgctttaaagattgaagcataaaaacaatc aggaataattaattggtttttgttaattattgattggttgattgattgat tgaggcaattgcttgaaaaaataatcatattccattaacaaaatacttga agaattc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001211XLOC_001211Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002285-exon-sc0000019-1491911889:1034024..1034449TCONS_00002285-exon-sc0000019-1491911889:1034024..1034449Clytia hemisphaericaexon
TCONS_00002285-exon-sc0000019-1510915933:1034024..1034449TCONS_00002285-exon-sc0000019-1510915933:1034024..1034449Clytia hemisphaericaexon
TCONS_00002285-exon-sc0000019-1575043694:1034024..1034449TCONS_00002285-exon-sc0000019-1575043694:1034024..1034449Clytia hemisphaericaexon
TCONS_00002285-exon-sc0000019-1491911889:1039111..1039224TCONS_00002285-exon-sc0000019-1491911889:1039111..1039224Clytia hemisphaericaexon
TCONS_00002285-exon-sc0000019-1510915933:1039111..1039224TCONS_00002285-exon-sc0000019-1510915933:1039111..1039224Clytia hemisphaericaexon
TCONS_00002285-exon-sc0000019-1575043694:1039111..1039224TCONS_00002285-exon-sc0000019-1575043694:1039111..1039224Clytia hemisphaericaexon
TCONS_00002285-exon-sc0000019-1491911889:1041355..1041758TCONS_00002285-exon-sc0000019-1491911889:1041355..1041758Clytia hemisphaericaexon
TCONS_00002285-exon-sc0000019-1510915933:1041355..1041758TCONS_00002285-exon-sc0000019-1510915933:1041355..1041758Clytia hemisphaericaexon
TCONS_00002285-exon-sc0000019-1575043694:1041355..1041758TCONS_00002285-exon-sc0000019-1575043694:1041355..1041758Clytia hemisphaericaexon
TCONS_00002285-exon-sc0000019-1491911889:1042192..1042630TCONS_00002285-exon-sc0000019-1491911889:1042192..1042630Clytia hemisphaericaexon
TCONS_00002285-exon-sc0000019-1510915933:1042192..1042630TCONS_00002285-exon-sc0000019-1510915933:1042192..1042630Clytia hemisphaericaexon
TCONS_00002285-exon-sc0000019-1575043694:1042192..1042630TCONS_00002285-exon-sc0000019-1575043694:1042192..1042630Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000019supercontigsc0000019:1034024..1042630 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
474.84 512.995 597.777 666.09 292.804 228.359 300.943 315.582 596.473 455.851 610.201 698.736 697.487 636.635 547.254 490.411 497.729 554.669 437.935 465.365 657.769 647.507 516.454 504.07 396.371 405.016 511.094 579.369 397.688 442.204
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00002285 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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