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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00002280 ID=TCONS_00002280|Name=TCONS_00002280|organism=Clytia hemisphaerica|type=transcript|length=906bp
TCACTTTGTTTCCATTCTAGAAGGATCTGTCGAAAGTCTTTAGTCCTTCT
ATAACCAGGCTTTATAAGAATCTTATGTCTCACTGAAGCGTGTCCAAAAC
TGTGAAATTTACAATTTCCAGTCTCATCACAAGAAATTTAGTTGAATTGA
ATTATGTGGAGAGCTTTGGAAACTTGAAGGATTGACAACAATGGCAAACA
AGGTAATGGACCATCACTCACATGAACTATACTACCAAACCAAAACAGAA
ATACGAAAGATGAAGTCAGACCTTGAAGAACAAATGAGATGTAAAAACGA
AAGTGTGTTGCGGCTGAGCGAACGGTTGAAGAATACTGAGAGACTGGTCA
CCAGGCTAGAGGAAGAGAACATGTACAAGGAAACTAGGCTAGTTGAACAG
TTATCAAGTATGGAGCTGCAGCTAAAGGAAACAACGGATGCtttgaaaat
ggtccaaaaagaACAAAGAGAAATGAAAACAAAGCTGACTCAGCAATCAG
ATGTGAAAAGTAGTCAGATATCAAACCTGGAAGAACGATTGTTGAAAATA
GAGCAGCATTTATCCGAGCAAAATTAATTCAACTTTGTGATATATGAATA
TCAACAATTGTTTGCAACCTGCAGTGGCTGAAGCTCATGGCAAATTTAGT
ATTATAAAAAGATCTGCGTCCGAATCTCCGAAATAGCCTTAAACAGGTTT
TGTCGGACACCCTTTTTAACGGTATAGGAAAACCTGTACTGATAATTCTT
AATTTACGGAACAGTTAAATTTAACTTCATttgtatatatataaaaattg
taGATAGTCTTAAATTAATTTATGCTTGTCAGAAATGTCCGGGTTTAGAA
TGATTCTTCGACTCAATATTTTCAATACCACTTTTGATTGTAGTTTTCAT
TCTCAC Run BLAST on NCBI protein sequence of TCONS_00002280-protein >TCONS_00002280-protein ID=TCONS_00002280-protein|Name=TCONS_00002280-protein|organism=Clytia hemisphaerica|type=polypeptide|length=128bp
MANKVMDHHSHELYYQTKTEIRKMKSDLEEQMRCKNESVLRLSERLKNTE
RLVTRLEEENMYKETRLVEQLSSMELQLKETTDALKMVQKEQREMKTKLT
QQSDVKSSQISNLEERLLKIEQHLSEQN Run BLAST on NCBI transcript from alignment at sc0000019:902669..905810+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00002280 ID=TCONS_00002280|Name=TCONS_00002280|organism=Clytia hemisphaerica|type=transcript|length=3142bp|location=Sequence derived from alignment at sc0000019:902669..905810+ (Clytia hemisphaerica)
TCACTTTGTTTCCATTCTAGAAGGATCTGTCGAAAGTCTTTAGTCCTTCT
ATAACCAGGCTTTATAAGAATCTTATGTCTCACTGAAGCGTGTCCAAAAC
TGTGAAATTTACAATTTCCAGTCTCATCACAAGAAATTTAGTTGAATTGA
ATTATGTGGAGAGCTTTGGAAACTTGAAGGATTGACAACAATGGCAAACA
AGGGTAAGACTTTtgttttcttatatttctttcgCATCAAGCTATCATNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCTGAttt
agcggccgaagacctggaCTGACCTTGTTTTGACGTGTGTGTCAGGTGAA
AACCCTGTCTCACTTTTCCTGACAATTGTCACAGGAAAATTTTAGTAAAT
CACCTGGGTGGGAAAAGTATATTTCACACCATGGGATGATTGATTTTCCC
ACCCGTGTGAATTTATTCTACGTTCCAAGGTGTGAAATGCACTTTTCCCA
CCCGGGTGATATACTCAATTTTCCTTGTGATAAGTCACTTACCAAGTAAC
ATTCACCGTGACTAACAATCCTAACGCCTAACGTCACCTTTCTATCTTTT
ACATAAATTCATGGGATCACTGAAAATTAGATGAAAATCCAAGGGAGGTT
TGACCCCCAAGAATGACAGCCTTAACAAATAGGGGATAAAGATTCTTTAT
GGAATAGGATGTTAGATGTGCATTCAAAGAACTTAAATTTTAACGGAAAA
GTTAGTTTCAATTGGAAAATAATTTCTCCCTGGATGATTTTGTTATCTCG
AAGTTAACGCTTTGGATCACTCGCTATCAAATAGAAATTTCATAGTTTTG
TTGTTCTGGCCTTTTTCTTATCTCAATATAATGTTTTGAGATAGATGTTA
CTTTTTGAGATTGCGCTATCTTAGACCATCTTCTTGTGGTTAAAAATTTA
TCCTTTTGTTCTTCCTTGAAATTCCTTATTTACAAAAGCACGACTTAGCC
AAATAAAATTCCCTTCATAAGTCTTCATAACCCTAGAGATATTAGTTGAC
AGCTTTTCGGctttgaataattatttttcgtTTAACCTTAtaatttttta
ctcattttaacAATATATTTCATCTAAAACAGTTTGACGCCGACAGTGAA
ACATATACTTTTTGATAGACAAGAATTTCTTCGTCGAACTTGTATCCCCT
CTTTttattttcgcaatttttttttttatattttttcttgatttcacNCC
TTGTATCCCCTCTTTATTTTcgcaatttttattttatatttttcttgatt
tcacaGTCAAAATTTAACTGACGAATTATCATGTTGGAAATAAAttctat
ttcttcttctttcttcgtCTTCACAGAAAAAAAGGAAAGGGAATTAACGG
TTTTTTTTATTcgagtttcaaaaataaagaaaacctcTGGATTAACTTTT
CACGGATGGTCTAAATTCGCCTTGtatcaacaacaaaagaaataaataaa
gaaaGGCTTTCATAGAACTTTGCCCTTTTTCTCACCACAGCTTTAAGAAC
TAGCTGAATTTAGCTAAGTTAAAGGTTTCTTGTTAAGCTACTTGTCCAGC
AACTACTTTGGCTCTCTAGAACTTATTGTAACATCACTTGTAAATTGCAA
ATTGACCTTCGCCCTAAATAGGTAAGATGTCAATAATCGATGACGCCGAG
AAGGGAATTGTGTAGTCAACCCTTTGTTTTATTAGACTGAAACTGGGCTT
TTTACTGGGATGTAGGCATAGGAAGTCGCTAGGTTGTTAGTTTTTCGGTA
CATATGGGGTCATTTTTCTCAATTATCGCTTTGTGTTTTGTAAGCTGCTT
TCCTTAGGCTTTGAACGTCCCCTTAACTATTTCCTAATTATCTTCTCATT
CTGCAGTATACCTCcattgacctttatatatccctggaccaagctataac
caccatctttgatcaggttttttttggaattattacccaagaagaagcca
ttgcaatgttaaaaattaacgtctaacggcgctacatcatcaaaagtatt
cgaggaaaagtatctcgatgcattttcaccgctattgagtagtgccgcca
ttagggtaccaatttcaaaatgaTTTGAATCAAAGAATTTTGGTTGGCCg
agattgagtaacttggtccagggatatataaaggtcagtgtatACCTTAG
AGTAACGACAAGTATGATAAATCTTTTCCCAAATTCGCGTTTATGCGATT
GGTAAGAGTTTCATCTGTtttctttcgttatttttctaGTAATGGACCAT
CACTCACATGAACTATACTACCAAACCAAAACAGAAATACGAAAGATGAA
GTCAGACCTTGAAGAACAAATGAGATGTAAAAACGAAAGTGTGTTGCGGC
TGAGCGAACGGTTGAAGAATACTGAGAGACTGGTCACCAGGCTAGAGGAA
GAGAACATGTACAAGGAAACTAGGCTAGTTGAACAGTTATCAAGTATGGA
GCTGCAGCTAAAGGAAACAACGGATGCtttgaaaatggtccaaaaagaAC
AAAGAGAAATGAAAACAAAGCTGACTCAGCAATCAGATGTGAAAAGTAGT
CAGATATCAAACCTGGAAGAACGATTGTTGAAAATAGAGCAGCATTTATC
CGAGCAAAATTAATTCAACTTTGTGATATATGAATATCAACAATTGTTTG
CAACCTGCAGTGGCTGAAGCTCATGGCAAATTTAGTATTATAAAAAGATC
TGCGTCCGAATCTCCGAAATAGCCTTAAACAGGTTTTGTCGGACACCCTT
TTTAACGGTATAGGAAAACCTGTACTGATAATTCTTAATTTACGGAACAG
TTAAATTTAACTTCATttgtatatatataaaaattgtaGATAGTCTTAAA
TTAATTTATGCTTGTCAGAAATGTCCGGGTTTAGAATGATTCTTCGACTC
AATATTTTCAATACCACTTTTGATTGTAGTTTTCATTCTCAC Coding sequence (CDS) from alignment at sc0000019:902669..905810+ >TCONS_00002280 ID=TCONS_00002280|Name=TCONS_00002280|organism=Clytia hemisphaerica|type=CDS|length=774bp|location=Sequence derived from alignment at sc0000019:902669..905810+ (Clytia hemisphaerica)
ATGGCAAACAAGGTAATGGACCATCACTCACATGAACTATACTACCAAAC
CAAAACAGAAATACGAAAGATGAAGTCAGACCTTGAAGAACAAATGAGAT
GTAAAAACGAAAGTGTGTTGCGGCTGAGCGAACGGTTGAAGAATACTGAG
AGACTGGTCACCAGGCTAGAGGAAGAGAACATGTACAAGGAAACTAGGCT
AGTTGAACAGTTATCAAGTATGGAGCTGCAGCTAAAGGAAACAACGGATG
CtttgaaaatggtccaaaaagaACAAAGAGAAATGAAAACAAAGCTGACT
CAGCAATCAGATGTGAAAAGTAGTCAGATATCAAACCTGGAAGAACGATT
GTTGAAAATAGAGCAGCATTTATCCGAGCAAAATTAAATGGCAAACAAGG
TAATGGACCATCACTCACATGAACTATACTACCAAACCAAAACAGAAATA
CGAAAGATGAAGTCAGACCTTGAAGAACAAATGAGATGTAAAAACGAAAG
TGTGTTGCGGCTGAGCGAACGGTTGAAGAATACTGAGAGACTGGTCACCA
GGCTAGAGGAAGAGAACATGTACAAGGAAACTAGGCTAGTTGAACAGTTA
TCAAGTATGGAGCTGCAGCTAAAGGAAACAACGGATGCtttgaaaatggt
ccaaaaagaACAAAGAGAAATGAAAACAAAGCTGACTCAGCAATCAGATG
TGAAAAGTAGTCAGATATCAAACCTGGAAGAACGATTGTTGAAAATAGAG
CAGCATTTATCCGAGCAAAATTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00002280-exon-sc0000019-1491911889:902669..902871 | TCONS_00002280-exon-sc0000019-1491911889:902669..902871 | Clytia hemisphaerica | exon |
| TCONS_00002280-exon-sc0000019-1510915933:902669..902871 | TCONS_00002280-exon-sc0000019-1510915933:902669..902871 | Clytia hemisphaerica | exon |
| TCONS_00002280-exon-sc0000019-1575043694:902669..902871 | TCONS_00002280-exon-sc0000019-1575043694:902669..902871 | Clytia hemisphaerica | exon |
| TCONS_00002280-exon-sc0000019-1491911889:905108..905810 | TCONS_00002280-exon-sc0000019-1491911889:905108..905810 | Clytia hemisphaerica | exon |
| TCONS_00002280-exon-sc0000019-1510915933:905108..905810 | TCONS_00002280-exon-sc0000019-1510915933:905108..905810 | Clytia hemisphaerica | exon |
| TCONS_00002280-exon-sc0000019-1575043694:905108..905810 | TCONS_00002280-exon-sc0000019-1575043694:905108..905810 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000019 | supercontig | sc0000019:902669..905810 + |
Blast
The following BLAST results are available for this feature:
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