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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00002262 ID=TCONS_00002262|Name=TCONS_00002262|organism=Clytia hemisphaerica|type=transcript|length=841bp
CCAGATAGTTTATTATCATATCATTTCTATAATTGTTTTTGATGGTATGC
TTTTATTACCTCTGTTTTTATGAAGTTTTTTTGTCTAATCTGATTTTTGT
GTTTTCAGTTGTTGGAAAAGTCTTGGTAAAATTATACGAAAACAAAGCAG
AGACAGGTAATATTGTGACTTTCAAAGAAAGCGCAGAATATCCAGACAAT
CCCATTCAAACTGGTCGACAAGATGATTTTATGAGTCTTGGCttgaaaat
taaagatggcgcCGCTGTTAGTTACCAAGGCTTGTTCAAACCACCAACAA
CCGGAAGATACAAGTTTCGAGTTTTTTGCGATCGCAAATGTGAATTTTAC
TTAAGTTCGGATCACCGTAAAAGTCAGAAGATAGAGATTCTAAAACTTCC
GTATCCAAGTGATTTCTTTGATCTTGAatatccTTTACTCCAAGAAACAC
CAGAGTCTGCAGAATTAATAGAAGGTGATGAATATTACATTGAATTGTTT
GTTTTGTCACTACCAGATAACAACAACCATGGAGAAGTGAAATTTTTCCA
TCCTGATGTACAGAAATGGTACCCTATGATCGGACAGTTTCTCGGTACAT
ACAcagaaaattaacaaaaatccAGGACAAGACCGATTTCCATTTTCCAT
CggttgaataaattttttatagAAACTCAAAGGAGACAGAGCCTACATCC
TcttggaaataaaaaaatatcaagtttCAGTGTTTTacatttaaaatata
tttttttattttttagcctTTATTGTATaatatgaattttaaaattaata
atgttgaatttagatatttttgtttttggcaATAACAAAAT Run BLAST on NCBI protein sequence of TCONS_00002262-protein >TCONS_00002262-protein ID=TCONS_00002262-protein|Name=TCONS_00002262-protein|organism=Clytia hemisphaerica|type=polypeptide|length=190bp
MVCFYYLCFYEVFLSNLIFVFSVVGKVLVKLYENKAETGNIVTFKESAEY
PDNPIQTGRQDDFMSLGLKIKDGAAVSYQGLFKPPTTGRYKFRVFCDRKC
EFYLSSDHRKSQKIEILKLPYPSDFFDLEYPLLQETPESAELIEGDEYYI
ELFVLSLPDNNNHGEVKFFHPDVQKWYPMIGQFLGTYTEN Run BLAST on NCBI transcript from alignment at sc0000019:605263..606510+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00002262 ID=TCONS_00002262|Name=TCONS_00002262|organism=Clytia hemisphaerica|type=transcript|length=1248bp|location=Sequence derived from alignment at sc0000019:605263..606510+ (Clytia hemisphaerica)
CCAGATAGTTTATTATCATATCATTTCTATAATTGTTTTTGATGGTATGC
TTTTATTACCTCTGTTTTTATGAAGTTTTTTTGTCTAATCTGATTTTTGT
GTTTTCAGTTGTTGGAAAAGTCTTGGTAAAATTATACGAAAACAAAGCAG
AGACAGGTAATATTGTGACTTTCAAAGAAAGCGCAGAATATCCAGACAAT
CCCATTCAAACTGGTCGACAAGATGATTTTATGAGTCTTGGCttgaaaat
taaagatggcgcCGCTGTTAGTTACCAAGGCTTGTTCAAACCACCAACAA
CCGGAAGATACAAGTTTCGAGTTTTTTGCGATCGCAAATGTGAATTTTAC
TTAAGTTCGGATCACCGTAAAAGTCAGAAGATAGAGATTCTAAAACTTCC
GTATCCAAGTGATTTCTTTGATCTTGAGTAAGTTTTatcaaaagtatgtg
gacactttatatagttttttgacctttttttaacACCCATGCATGCTATG
ttagaaagatatttccaaggagaataatctaaaagattaaagattttgta
aaactaaagaagaaaaatgaagaaatcatGACATCAGGCCATTTAGAAAA
TTCAAGCCTTGCAGATTTCAAATCTGTGCTCAGATTGTTTTTGTCATTCC
TGGATAAAAAGTTATAGCCCTTTGAAGTAGAACTAAAATAACCAACTTCA
CTGTTGATATTTTGTTTGATTCGAAACTCTctataattcaaagaaataag
cAGACTTTCCCATTCGAGTTAAACTCGAAATTTCACtttcgaatattttt
ttcaaaaatcatttctaactatttttttttttagatatccTTTACTCCAA
GAAACACCAGAGTCTGCAGAATTAATAGAAGGTGATGAATATTACATTGA
ATTGTTTGTTTTGTCACTACCAGATAACAACAACCATGGAGAAGTGAAAT
TTTTCCATCCTGATGTACAGAAATGGTACCCTATGATCGGACAGTTTCTC
GGTACATACAcagaaaattaacaaaaatccAGGACAAGACCGATTTCCAT
TTTCCATCggttgaataaattttttatagAAACTCAAAGGAGACAGAGCC
TACATCCTcttggaaataaaaaaatatcaagtttCAGTGTTTTacattta
aaatatatttttttattttttagcctTTATTGTATaatatgaattttaaa
attaataatgttgaatttagatatttttgtttttggcaATAACAAAAT Coding sequence (CDS) from alignment at sc0000019:605263..606510+ >TCONS_00002262 ID=TCONS_00002262|Name=TCONS_00002262|organism=Clytia hemisphaerica|type=CDS|length=1146bp|location=Sequence derived from alignment at sc0000019:605263..606510+ (Clytia hemisphaerica)
ATGGTATGCTTTTATTACCTCTGTTTTTATGAAGTTTTTTTGTCTAATCT
GATTTTTGTGTTTTCAGTTGTTGGAAAAGTCTTGGTAAAATTATACGAAA
ACAAAGCAGAGACAGGTAATATTGTGACTTTCAAAGAAAGCGCAGAATAT
CCAGACAATCCCATTCAAACTGGTCGACAAGATGATTTTATGAGTCTTGG
CttgaaaattaaagatggcgcCGCTGTTAGTTACCAAGGCTTGTTCAAAC
CACCAACAACCGGAAGATACAAGTTTCGAGTTTTTTGCGATCGCAAATGT
GAATTTTACTTAAGTTCGGATCACCGTAAAAGTCAGAAGATAGAGATTCT
AAAACTTCCGTATCCAAGTGATTTCTTTGATCTTGAatatccTTTACTCC
AAGAAACACCAGAGTCTGCAGAATTAATAGAAGGTGATGAATATTACATT
GAATTGTTTGTTTTGTCACTACCAGATAACAACAACCATGGAGAAGTGAA
ATTTTTCCATCCTGATGTACAGAAATGGTACCCTATGATCGGACAGTTTC
TCGGTACATACAcagaaaattaaATGGTATGCTTTTATTACCTCTGTTTT
TATGAAGTTTTTTTGTCTAATCTGATTTTTGTGTTTTCAGTTGTTGGAAA
AGTCTTGGTAAAATTATACGAAAACAAAGCAGAGACAGGTAATATTGTGA
CTTTCAAAGAAAGCGCAGAATATCCAGACAATCCCATTCAAACTGGTCGA
CAAGATGATTTTATGAGTCTTGGCttgaaaattaaagatggcgcCGCTGT
TAGTTACCAAGGCTTGTTCAAACCACCAACAACCGGAAGATACAAGTTTC
GAGTTTTTTGCGATCGCAAATGTGAATTTTACTTAAGTTCGGATCACCGT
AAAAGTCAGAAGATAGAGATTCTAAAACTTCCGTATCCAAGTGATTTCTT
TGATCTTGAatatccTTTACTCCAAGAAACACCAGAGTCTGCAGAATTAA
TAGAAGGTGATGAATATTACATTGAATTGTTTGTTTTGTCACTACCAGAT
AACAACAACCATGGAGAAGTGAAATTTTTCCATCCTGATGTACAGAAATG
GTACCCTATGATCGGACAGTTTCTCGGTACATACAcagaaaattaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00002262-exon-sc0000019-1491911889:605263..605689 | TCONS_00002262-exon-sc0000019-1491911889:605263..605689 | Clytia hemisphaerica | exon |
| TCONS_00002262-exon-sc0000019-1510915933:605263..605689 | TCONS_00002262-exon-sc0000019-1510915933:605263..605689 | Clytia hemisphaerica | exon |
| TCONS_00002262-exon-sc0000019-1575043694:605263..605689 | TCONS_00002262-exon-sc0000019-1575043694:605263..605689 | Clytia hemisphaerica | exon |
| TCONS_00002262-exon-sc0000019-1491911889:606097..606510 | TCONS_00002262-exon-sc0000019-1491911889:606097..606510 | Clytia hemisphaerica | exon |
| TCONS_00002262-exon-sc0000019-1510915933:606097..606510 | TCONS_00002262-exon-sc0000019-1510915933:606097..606510 | Clytia hemisphaerica | exon |
| TCONS_00002262-exon-sc0000019-1575043694:606097..606510 | TCONS_00002262-exon-sc0000019-1575043694:606097..606510 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000019 | supercontig | sc0000019:605263..606510 + |
Blast
The following BLAST results are available for this feature:
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