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TCONS_00002262 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002262
Unique NameTCONS_00002262
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length841

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002262 ID=TCONS_00002262|Name=TCONS_00002262|organism=Clytia hemisphaerica|type=transcript|length=841bp
CCAGATAGTTTATTATCATATCATTTCTATAATTGTTTTTGATGGTATGC
TTTTATTACCTCTGTTTTTATGAAGTTTTTTTGTCTAATCTGATTTTTGT
GTTTTCAGTTGTTGGAAAAGTCTTGGTAAAATTATACGAAAACAAAGCAG
AGACAGGTAATATTGTGACTTTCAAAGAAAGCGCAGAATATCCAGACAAT
CCCATTCAAACTGGTCGACAAGATGATTTTATGAGTCTTGGCttgaaaat
taaagatggcgcCGCTGTTAGTTACCAAGGCTTGTTCAAACCACCAACAA
CCGGAAGATACAAGTTTCGAGTTTTTTGCGATCGCAAATGTGAATTTTAC
TTAAGTTCGGATCACCGTAAAAGTCAGAAGATAGAGATTCTAAAACTTCC
GTATCCAAGTGATTTCTTTGATCTTGAatatccTTTACTCCAAGAAACAC
CAGAGTCTGCAGAATTAATAGAAGGTGATGAATATTACATTGAATTGTTT
GTTTTGTCACTACCAGATAACAACAACCATGGAGAAGTGAAATTTTTCCA
TCCTGATGTACAGAAATGGTACCCTATGATCGGACAGTTTCTCGGTACAT
ACAcagaaaattaacaaaaatccAGGACAAGACCGATTTCCATTTTCCAT
CggttgaataaattttttatagAAACTCAAAGGAGACAGAGCCTACATCC
TcttggaaataaaaaaatatcaagtttCAGTGTTTTacatttaaaatata
tttttttattttttagcctTTATTGTATaatatgaattttaaaattaata
atgttgaatttagatatttttgtttttggcaATAACAAAAT
Run BLAST on NCBI

protein sequence of TCONS_00002262-protein

>TCONS_00002262-protein ID=TCONS_00002262-protein|Name=TCONS_00002262-protein|organism=Clytia hemisphaerica|type=polypeptide|length=190bp
MVCFYYLCFYEVFLSNLIFVFSVVGKVLVKLYENKAETGNIVTFKESAEY
PDNPIQTGRQDDFMSLGLKIKDGAAVSYQGLFKPPTTGRYKFRVFCDRKC
EFYLSSDHRKSQKIEILKLPYPSDFFDLEYPLLQETPESAELIEGDEYYI
ELFVLSLPDNNNHGEVKFFHPDVQKWYPMIGQFLGTYTEN
Run BLAST on NCBI

transcript from alignment at sc0000019:605263..606510+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002262 ID=TCONS_00002262|Name=TCONS_00002262|organism=Clytia hemisphaerica|type=transcript|length=1248bp|location=Sequence derived from alignment at sc0000019:605263..606510+ (Clytia hemisphaerica)
CCAGATAGTTTATTATCATATCATTTCTATAATTGTTTTTGATGGTATGC TTTTATTACCTCTGTTTTTATGAAGTTTTTTTGTCTAATCTGATTTTTGT GTTTTCAGTTGTTGGAAAAGTCTTGGTAAAATTATACGAAAACAAAGCAG AGACAGGTAATATTGTGACTTTCAAAGAAAGCGCAGAATATCCAGACAAT CCCATTCAAACTGGTCGACAAGATGATTTTATGAGTCTTGGCttgaaaat taaagatggcgcCGCTGTTAGTTACCAAGGCTTGTTCAAACCACCAACAA CCGGAAGATACAAGTTTCGAGTTTTTTGCGATCGCAAATGTGAATTTTAC TTAAGTTCGGATCACCGTAAAAGTCAGAAGATAGAGATTCTAAAACTTCC GTATCCAAGTGATTTCTTTGATCTTGAGTAAGTTTTatcaaaagtatgtg gacactttatatagttttttgacctttttttaacACCCATGCATGCTATG ttagaaagatatttccaaggagaataatctaaaagattaaagattttgta aaactaaagaagaaaaatgaagaaatcatGACATCAGGCCATTTAGAAAA TTCAAGCCTTGCAGATTTCAAATCTGTGCTCAGATTGTTTTTGTCATTCC TGGATAAAAAGTTATAGCCCTTTGAAGTAGAACTAAAATAACCAACTTCA CTGTTGATATTTTGTTTGATTCGAAACTCTctataattcaaagaaataag cAGACTTTCCCATTCGAGTTAAACTCGAAATTTCACtttcgaatattttt ttcaaaaatcatttctaactatttttttttttagatatccTTTACTCCAA GAAACACCAGAGTCTGCAGAATTAATAGAAGGTGATGAATATTACATTGA ATTGTTTGTTTTGTCACTACCAGATAACAACAACCATGGAGAAGTGAAAT TTTTCCATCCTGATGTACAGAAATGGTACCCTATGATCGGACAGTTTCTC GGTACATACAcagaaaattaacaaaaatccAGGACAAGACCGATTTCCAT TTTCCATCggttgaataaattttttatagAAACTCAAAGGAGACAGAGCC TACATCCTcttggaaataaaaaaatatcaagtttCAGTGTTTTacattta aaatatatttttttattttttagcctTTATTGTATaatatgaattttaaa attaataatgttgaatttagatatttttgtttttggcaATAACAAAAT

Coding sequence (CDS) from alignment at sc0000019:605263..606510+

>TCONS_00002262 ID=TCONS_00002262|Name=TCONS_00002262|organism=Clytia hemisphaerica|type=CDS|length=1146bp|location=Sequence derived from alignment at sc0000019:605263..606510+ (Clytia hemisphaerica)
ATGGTATGCTTTTATTACCTCTGTTTTTATGAAGTTTTTTTGTCTAATCT
GATTTTTGTGTTTTCAGTTGTTGGAAAAGTCTTGGTAAAATTATACGAAA
ACAAAGCAGAGACAGGTAATATTGTGACTTTCAAAGAAAGCGCAGAATAT
CCAGACAATCCCATTCAAACTGGTCGACAAGATGATTTTATGAGTCTTGG
CttgaaaattaaagatggcgcCGCTGTTAGTTACCAAGGCTTGTTCAAAC
CACCAACAACCGGAAGATACAAGTTTCGAGTTTTTTGCGATCGCAAATGT
GAATTTTACTTAAGTTCGGATCACCGTAAAAGTCAGAAGATAGAGATTCT
AAAACTTCCGTATCCAAGTGATTTCTTTGATCTTGAatatccTTTACTCC
AAGAAACACCAGAGTCTGCAGAATTAATAGAAGGTGATGAATATTACATT
GAATTGTTTGTTTTGTCACTACCAGATAACAACAACCATGGAGAAGTGAA
ATTTTTCCATCCTGATGTACAGAAATGGTACCCTATGATCGGACAGTTTC
TCGGTACATACAcagaaaattaaATGGTATGCTTTTATTACCTCTGTTTT
TATGAAGTTTTTTTGTCTAATCTGATTTTTGTGTTTTCAGTTGTTGGAAA
AGTCTTGGTAAAATTATACGAAAACAAAGCAGAGACAGGTAATATTGTGA
CTTTCAAAGAAAGCGCAGAATATCCAGACAATCCCATTCAAACTGGTCGA
CAAGATGATTTTATGAGTCTTGGCttgaaaattaaagatggcgcCGCTGT
TAGTTACCAAGGCTTGTTCAAACCACCAACAACCGGAAGATACAAGTTTC
GAGTTTTTTGCGATCGCAAATGTGAATTTTACTTAAGTTCGGATCACCGT
AAAAGTCAGAAGATAGAGATTCTAAAACTTCCGTATCCAAGTGATTTCTT
TGATCTTGAatatccTTTACTCCAAGAAACACCAGAGTCTGCAGAATTAA
TAGAAGGTGATGAATATTACATTGAATTGTTTGTTTTGTCACTACCAGAT
AACAACAACCATGGAGAAGTGAAATTTTTCCATCCTGATGTACAGAAATG
GTACCCTATGATCGGACAGTTTCTCGGTACATACAcagaaaattaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001196XLOC_001196Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002262-proteinTCONS_00002262-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002262-exon-sc0000019-1491911889:605263..605689TCONS_00002262-exon-sc0000019-1491911889:605263..605689Clytia hemisphaericaexon
TCONS_00002262-exon-sc0000019-1510915933:605263..605689TCONS_00002262-exon-sc0000019-1510915933:605263..605689Clytia hemisphaericaexon
TCONS_00002262-exon-sc0000019-1575043694:605263..605689TCONS_00002262-exon-sc0000019-1575043694:605263..605689Clytia hemisphaericaexon
TCONS_00002262-exon-sc0000019-1491911889:606097..606510TCONS_00002262-exon-sc0000019-1491911889:606097..606510Clytia hemisphaericaexon
TCONS_00002262-exon-sc0000019-1510915933:606097..606510TCONS_00002262-exon-sc0000019-1510915933:606097..606510Clytia hemisphaericaexon
TCONS_00002262-exon-sc0000019-1575043694:606097..606510TCONS_00002262-exon-sc0000019-1575043694:606097..606510Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000019supercontigsc0000019:605263..606510 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.336814 0.218964 0.190679 0 0.227106 0.358925 0.721713 0.270263 0.520349 0.468754 0.796221 0.560791 0.149336 0.232631 0.0318757 0.13683 0.632113 0.777474 0.119347 0.249776 2.98513 2.46204 0.514912 0.526646 0.0602704 0.16137 0.461839 0.73933 0.124612 0.0634802
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00002262 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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