TCONS_00002261 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002261
Unique NameTCONS_00002261
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1176

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002261 ID=TCONS_00002261|Name=TCONS_00002261|organism=Clytia hemisphaerica|type=transcript|length=1176bp
AATCAATATTCTGTTACAGTACATAAAAAgctttttctcaaaaacaattt
tgtgtGCAGGTTGCACATACTGTAGTGCAGATTGAAAgagagattttatt
tatttccgaAACATTTCGACTACAGAGAGAAGTATTTTTGAACGAGAGAA
GAAAGCTAGTGTTATTAAATTTAGGCGACCTCTTGAAAAGGAAATCATTC
TCTACATTATAAATAGGCAGTCATGACAAGCAAAAGTGCCATTCGACAAA
ACTACAATGGTGATTGTGAAGCTCTCGTCAACAAGCATGCAAATATGGAG
TTGTACGCATCTTACctttatacttcattgaGTTTCCATTTCGATCGTTC
AGACATTTCGTCTCACGGATATTCTCAATTCTTCAAGAAAATGTCAACAA
AGAAATCTTCTGCTGCACACGAGtttttaaaGTATCAAAACAAGCGTGGA
GGGCGTGTATGTTTCCAAGACATAAGTACGCCACCAGTTGAATGGAAAAC
GCCCGATGACGCCCTTCAAGAATcacttgaaattgaaaagagaatAAATG
CACATCTAATCGCATTGAAATCTACAGCAGACGCAAATAAAGATGCTCAT
CTAGAACACTTCTTAGATGGTCATATAGACTCTGTTGTGGAATGCATCAA
TACTTTTGGTCACTTGATAACGAATTTGAAACGTTGTGGTACTGGACTTG
GTGGCTACCAGTTTGATCATCTAACCATGGAGAAAATGTAATTTTGTTCG
TCAattaattttctgaaatttaacattatatatataCTGATTCCAGGTAT
ACTCCAATATGCTCATTTGACcaagtgaaaatttgaattgtttctTTTAG
TTCTTTGATGTTCTCATTTACGACAAAATTATGtatggatttttttttga
acTATGATTAATACTTTAACTTTATTGggcaactttttttaaaaacagaa
aacGCATGTAATTCCTGCTTGGTTTtagttttctgaattttatttccttc
cagggtcggatacaggaggcaggctatcttattcatggagagtaattagt
ttccatataaggtaatacgataataaagtgcactctcctccattggttat
agcctccctctgtatccgagcctgcaTTCTGGCTTGAAACCTACTTATTA
GGTGAAAATTTTGAGgtgatggtttg
Run BLAST on NCBI

transcript from alignment at sc0000019:595141..599396+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002261 ID=TCONS_00002261|Name=TCONS_00002261|organism=Clytia hemisphaerica|type=transcript|length=4256bp|location=Sequence derived from alignment at sc0000019:595141..599396+ (Clytia hemisphaerica)
AATCAATATTCTGTTACAGTACATAAAAAgctttttctcaaaaacaattt tgtgtGCAGGTTGCACATACTGTAGTGCAGATTGAAAgagagattttatt tatttccgaAACATTTCGACTACAGAGAGAAGTATTTTTGAACGAGAGAA GAAAGCTAGTGTTATTAAATTTAGGCGACCTCTTGAAAAGGAAATCATTC TCTACATTATAAATAGGCAGGTATTCTTTTACTTTCTTGTTCCTTTCTCA GATTGTTTACGCTTCAATAACGTGGAAAGCTAACAACGACGAAAGCTTTT TTCAGAATCTCAGACCCCGATTCAATAGTCCTATAGGAGATGGTACTACC AACTTTGTTTGACAGTTTCTCCAGCTCTTTTTTTTCCGTCGATTTCTATG GTTACGACGGAATTTTGGTAAACGTCAACCAAGATGGAAGTACCATCTCC TAGAGAACTATAATTCATACCGTGAAGtcgagtaacttgcatcagtggag ggaatacttgcatagccatcaaatgactaacgaatcaaagcagcaaaatt tcaaaacaaatggtacgcagctctgctcgcagctctactctaccattttt gatttgatttaactTAGTATTTGATTTCTCTTTGTATTGACCAGCCAgtt cattcatttgagggctatgcatgttagcctcaattgatgcaagttacccg atctcacggtaatGGTCCTGGCTTCAGCAACGGGTCAATTCATCGGGGCA TTTCTCGGACAGTGTGCTTTGTGCGTCTAAtgtgatgttttttttataat agatTCGAAAAGTGAATAAAGAAAAGAAGTATAaacactttctttctttt ttgactttttttttgccaaaattgaaaaagagaGTTAGTGTAAGTTAGTG GATGAAAGTTCGTagcgaaatcccaatggggatagaaattctattgttcc tagGTAAAAAATCTGACGGGAAtagttttgaagtgcaattttttaccaTT GAATTTACAATGGGAATAAAAACATAATCAATTTCCTAGTGGGACTAAAA TTGTGGGTTGTTTTTTTCCACCGGATACAAAATTTTAGCAATATTTTCCg gcgggtctatgacacagtGTTGTTCAAAGGCTCGAAATTACTTTCAACAT AAATAAGACTCGTCCATCATTGCATTTTAGTCATGACAAGCAAAAGTGCC ATTCGACAAAACTACAATGGTGATTGTGAAGCTCTCGTCAACAAGCATGC AAATATGGAGTTGTACGCATCTTACctttatacttcattggtaaGTTaaa ctcccttctcacagacccaatcGGGATTTTTCAACAGCGAGAATAAAAGT AACGGACTGAAAATCGATGGGGATCAAAGTCAGAGAATTCATTAGAGAAT ATATTGTcagaaagttgataaaatgtcttTAGCAGGGACATGACGAAATA TTGTGGAAAAAGAGAAGCTTTAAAATTTCTATGGCACTACTTGCTCCGaa agtaaataaatttttgtctgACCATATTCTTTTTTTCCCACCCTATATTG TCAAATCCTAAATCGTTGGTTACTTAATTTCAGAATTTATTCATTTAATT TTCAGAGGCGCACGGGGTCAAAAATTCGAGTATAAATTTCCACCGGGGAa gatattttttccaatttttccagtaggaGAGGGTCCCACTGGGTCCATAA GAAAGTTGTACTAATCAAGTTCGAGGGTAAGATTTCCTACCATTAATGAA CTTGCAAAATCATAAGAAACACCTGGATTTATTTTACTTGCACACCTAAC TTACCTGTTCACTTAAGactattttttgtgatttcagaGTTTCCATTTCG ATCGTTCAGACATTTCGTCTCACGGATATTCTCAATTCTTCAAGAAAATG TCAACAAAGAAATCTTCTGCTGCACACGAGGTGAGTATTTAacaaaccca gctggcacacaacgttgtttcaacgtttttctaacgttatatggacgttg taaacgttagaaaaacgtcgaaacaacgttgtgtgccagctgtgAACAAA TATAACCATTTCTTGCCATACCTATTCTTATTGTGAATCAAAAAGGGTAG AAAATAAGCAGACTAAAGTCAACGTGTTTCCCTCTATTATGACGTcacta caatgacttctttaaatctttttcaGCCCACTTTTTACCTACTATAACAA TTAATATTGGCAGGGCagaaatttggccctgtttaaACTAGAGTCAACTT AAAGGGGAACTcagcaaatttttcatttttatttttttcctgatttttgg taatattaagtataaaaatgagaaagaaagtatATAGGTTCGATctctca aataaaaatcatgANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNTCTTCACTGATTTTTAGCCTGAGAAGATAAGCATCTTCCTCTTTC TGAATGCAGCTACGTCATAAAACAGCTGAAAGTgcgtcttttttatttga taaacaaGTCCATTTTAGTAGAGGGGAGCCTCTATTTAAAAGCTCATTAA ACTAATTTTTAGAGTGAAAGGAGAGTtgcaaccttgaaattttgaaattt atcgttgaaacaaaccatttcaggatagaaacaaaaaaatccaaaatttg ttgagttcccctttaaaTAATCTTTTGTTGACCACATGAACAAATCAAAT CTAGTTGACAGCCATAGCCTAGTCTTAATCCCTTAAAAAGatctttcttt cagtttttaaaGTATCAAAACAAGCGTGGAGGGCGTGTATGTTTCCAAGA CATAAGTACGCCACCAGTTGAATGGAAAACGCCCGATGACGCCCTTCAAG AATcacttgaaattgaaaagagaatAAATGCACATCTAATCGCATTGAAA TCTACAGCAGACGCAAATAAAGATGCTCATCTAGAACACTTCTTAGATGG TCATATAGACTCTGTTGTGGAATGCATCAATACTTTTGGTCACTTGATAA CGAATTTGAAACGTTGTGGTACTGGACTTGGTGGCTACCAGTTTGATCAT CTAACCATGGAGAAAATGTAATTTTGTTCGTCAattaattttctgaaatt taacattatatatataCTGATTCCAGGTATACTCCAATATGCTCATTTGA CcaagtgaaaatttgaattgtttctTTTAGTTCTTTGATGTTCTCATTTA CGACAAAATTATGtatggatttttttttgaacTATGATTAATACTTTAAC TTTATTGggcaactttttttaaaaacagaaaacGCATGTAATTCCTGCTT GGTTTtagttttctgaattttatttccttccagggtcggatacaggaggc aggctatcttattcatggagagtaattagtttccatataaggtaatacga taataaagtgcactctcctccattggttatagcctccctctgtatccgag cctgcaTTCTGGCTTGAAACCTACTTATTAGGTGAAAATTTTGAGgtgat ggtttg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001195XLOC_001195Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002261-exon-sc0000019-1491911889:595141..595360TCONS_00002261-exon-sc0000019-1491911889:595141..595360Clytia hemisphaericaexon
TCONS_00002261-exon-sc0000019-1510915933:595141..595360TCONS_00002261-exon-sc0000019-1510915933:595141..595360Clytia hemisphaericaexon
TCONS_00002261-exon-sc0000019-1575043694:595141..595360TCONS_00002261-exon-sc0000019-1575043694:595141..595360Clytia hemisphaericaexon
TCONS_00002261-exon-sc0000019-1491911889:596321..596430TCONS_00002261-exon-sc0000019-1491911889:596321..596430Clytia hemisphaericaexon
TCONS_00002261-exon-sc0000019-1510915933:596321..596430TCONS_00002261-exon-sc0000019-1510915933:596321..596430Clytia hemisphaericaexon
TCONS_00002261-exon-sc0000019-1575043694:596321..596430TCONS_00002261-exon-sc0000019-1575043694:596321..596430Clytia hemisphaericaexon
TCONS_00002261-exon-sc0000019-1491911889:596978..597070TCONS_00002261-exon-sc0000019-1491911889:596978..597070Clytia hemisphaericaexon
TCONS_00002261-exon-sc0000019-1510915933:596978..597070TCONS_00002261-exon-sc0000019-1510915933:596978..597070Clytia hemisphaericaexon
TCONS_00002261-exon-sc0000019-1575043694:596978..597070TCONS_00002261-exon-sc0000019-1575043694:596978..597070Clytia hemisphaericaexon
TCONS_00002261-exon-sc0000019-1491911889:598644..599396TCONS_00002261-exon-sc0000019-1491911889:598644..599396Clytia hemisphaericaexon
TCONS_00002261-exon-sc0000019-1510915933:598644..599396TCONS_00002261-exon-sc0000019-1510915933:598644..599396Clytia hemisphaericaexon
TCONS_00002261-exon-sc0000019-1575043694:598644..599396TCONS_00002261-exon-sc0000019-1575043694:598644..599396Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000019supercontigsc0000019:595141..599396 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
24.443 25.885 22.049 26.6415 4.27405 3.52051 10.0704 13.3001 14.8855 5.52637 5.61695 14.9976 4.16848 3.98316 3.13909 5.83354 4.52891 5.03221 2.83533 3.37435 5.51699 5.93522 15.101 22.0358 6.1479 4.20506 34.8881 48.2757 6.26288 3.79897
Blast
BLAST of TCONS_00002261 vs. Swiss-Prot (Human)
Match: FRIL (Ferritin light chain OS=Homo sapiens GN=FTL PE=1 SV=2)

HSP 1 Score: 139.428 bits (350), Expect = 8.865e-39
Identity = 74/171 (43.27%), Postives = 101/171 (59.06%), Query Frame = 1
Query:  235 SAIRQNYNGDCEALVNKHANMELYASYLYTSLSFHFDRSDISSHGYSQFFKKMSTKKSSAAHEFLKYQNKRGGRVCFQDISTPPV-EWKTPDDALQESLEIEKRINAHLIALKSTADANKDAHLEHFLDGH-IDSVVECINTFGHLITNLKRCG---TGLGGYQFDHLTME 732
            S IRQNY+ D EA VN   N+ L ASY Y SL F+FDR D++  G S FF++++ +K       LK QN+RGGR  FQDI  P   EW    DA++ ++ +EK++N  L+ L +   A  D HL  FL+ H +D  V+ I   G  +TNL R G    GLG Y F+ LT++
Sbjct:    3 SQIRQNYSTDVEAAVNSLVNLYLQASYTYLSLGFYFDRDDVALEGVSHFFRELAEEKREGYERLLKMQNQRGGRALFQDIKKPAEDEWGKTPDAMKAAMALEKKLNQALLDLHALGSARTDPHLCDFLETHFLDEEVKLIKKMGDHLTNLHRLGGPEAGLGEYLFERLTLK 173          
The following BLAST results are available for this feature:
BLAST of TCONS_00002261 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
FRIL8.865e-3943.27Ferritin light chain OS=Homo sapiens GN=FTL PE=1 S... [more]
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