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TCONS_00002242 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002242
Unique NameTCONS_00002242
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length573

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002242 ID=TCONS_00002242|Name=TCONS_00002242|organism=Clytia hemisphaerica|type=transcript|length=573bp
TTTTGAATCACCCCACTCTTGAATCTCAAAGCCAGGGACTTTCTAAAATC
AACTTGACCAGAAACTATATAAAGAGTGAGAGTTATCGTGACCAAGCAGT
AATCAACAAACGATTTTCAAGCATCACATCACTCCAAGAGCAATATTTTT
TCGTTCAAAGAAGAAAAGATGcagaaaattctttttgtaacgtttttatC
AGTGCTTGTTATTCAATATGTAACATgtTACAAAGCGACGACATTGTCAC
CACAGAAACCCACGCCAACAATAGAAATTACGGCACCGAAACAAATATCT
GACACTGACGAGATAGATACAGAAGACGAAGATATGGAGCTTATCAAAGG
TCGCGTCAAACGAGGATTTAGAATCCGACGTCGGCGACGCAGTGACCCAT
GTCCAGGCAAGTGTGCAGGATTCCTTCAATGTATGAAATATACTGCAAAC
TTTTGGAGATGCATCGAGGTTTACCCTACTGGCAATTGCAGATGTTGAAT
GAAGTTTATAATGTGAGATATAAAGCAAAAAATGAAGTGTATTGTAGTTA
TGAACGtctatgaagaaaaaaac
Run BLAST on NCBI

protein sequence of TCONS_00002242-protein

>TCONS_00002242-protein ID=TCONS_00002242-protein|Name=TCONS_00002242-protein|organism=Clytia hemisphaerica|type=polypeptide|length=109bp
MQKILFVTFLSVLVIQYVTCYKATTLSPQKPTPTIEITAPKQISDTDEID
TEDEDMELIKGRVKRGFRIRRRRRSDPCPGKCAGFLQCMKYTANFWRCIE
VYPTGNCRC
Run BLAST on NCBI

transcript from alignment at sc0000019:328674..331115+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002242 ID=TCONS_00002242|Name=TCONS_00002242|organism=Clytia hemisphaerica|type=transcript|length=2442bp|location=Sequence derived from alignment at sc0000019:328674..331115+ (Clytia hemisphaerica)
TTTTGAATCACCCCACTCTTGAATCTCAAAGGTGATGTGTCATTtttgtc attataaaaaaaacctcGCCTGAAAGGCTTTTGTCAATTTCTATTATTAA AGCTTGACGTACCTTAAATGGGTTTGTGTNTCACAATCGAATTACAAATC TTTGTGATCATCAAATCCAAACGAAAACTTCGAAAGTAGGAAGATTTTCT TAGCTATCAAATTAGGATAATAAGGAGATAAAAGTTGTTTGTGGTTGTTT ACACTTATTCTTTCAAACCAtcaataaagattttatttcattttgacgTC TTTATTTTAGCCAGGGACTTTCTAAAATCAACTTGACCAGAAACTATATA AAGAGTGAGAGTTATCGTGACCAAGCAGTAATCAACAAACGATTTTCAAG CATCACATCACTCCAAGAGCAATATTTTTTCGTTCAAAGAAGAAAAGATG cagaaaattctttttgtaacgtttttatCAGTGCTTGTTATTCAATATGT AACATGTAAGTAACAATAGGATTTTTTTACATATCAATCCTAGTGATGGA TATAGGGATTTGAGCATAGTCATTATATGAAACCCCGGTCTGCCGATGTA TTATATGTATAgtaattttgttcaattttcttttgttacaaacaaaagac aagttgcgatttgcatactttttgatcacgttaccaaaatctcctcttgg gattggtctatactttctaatcacatgactaaaaagttgcaaaataaatc gattttggtaagCAGTAAGCTTTACCTTctaacaataaaatttttattgt tagaAGATAAAGCTTACTGCTTACCAAAATCTcttaaaaagagacaaaag ccttccagaagggtgtttttataatgactatgatttGAGCTTACCACAGT CTGCAAATGTTTTGATATAAGTCCCCAAAatctaacctgagatcagattg tgaatgttttctgcacaccacgctgaagctctaaagggatgtgtgaaaac aaaataatttcaagcgcctttagaggtttaccgtgcgcgtaagaaaatta tgaacatctgttatcaggttaccaaAATCTTGTTGTAACCTAAatccaaa tttttaatttcaaggtTACAAAGCGACGACATTGTCACCACAGAAACCCA CGCCAACAATAGAAATTACGGCACCGAAACAAATATCTGACACTGACGAG ATAGATACAGAAGGTGAGATTATATGACCCTAGAAGCCCgaggggggcac tcgattttgaaaacgaccttacgttcggccaaaaatcaggtctttaaaat cggacccttacaatgcatttggctgaaaatcgacccttatagtgcaaaaa acctaccctttaAGGGCCGCACgcccggtaggtcacttacctggagtgcc ccccccccgggcctagAAAACCAAAATGTTTTGTATCATAGGGTTATTAG CCTCCTCAGGAGGAACAAATCTATTTAAGGATTTAAGTTTAGCTCGTTTG ATATTCAGATGTTATATTGCTAACTATGAGAAAAGTTCTAAATAGCTTTA GCGTCTGGGACAGAATTTTCAGCCTTTGGGCGTTGACAACGGAAAGTTTG AGAGGGGGCTATCTAGGATAGATTAAACCTTCTTTATCatatgttttaaa tttgaaactaaacctttggaaattcaatagattttctaaaataaatgATG TGTCAAAAAATAAGCATCTCTATAGTCGAATCTCAGTTCGCAAATTGCAC AGATCCGTAACGCTGCGAAATTCTGCATCTTTTAGCGTTGTGTTATTCCG CAACGTTGCGAAATTCCGCAGCTTTACTGCTGCATAATTTCGCAGCTCTG GCCTTTGGACCAAAATCGGCATCGTAGGGCCTGGACCGGGGTCCCAAAAT AATGtgcattttgaagaacaacccaaaaggaaacttttcaccctagcatt ttaatttcctCACCGCGATTATTCACAATCATTCTTGGAAGAAATACTAC TTCGTTCAAAAAAGCGCTACTTTGTTCAAGAAAGCAAGTTTTTGCCTGAT TCTGCATGTGTGTAGAAGAAAAGACCCTGGGGAAACGCTGCGAAAAACCG CAACGTTGCGGAATATTGCAACGTTGCCGATCTATGCAATTTGCCGAACT GATTTTCATTCATCTGTAgttcaagtttttttgttgttttatagACGAAG ATATGGAGCTTATCAAAGGTCGCGTCAAACGAGGATTTAGAATCCGACGT CGGCGACGCAGTGACCCATGTCCAGGCAAGTGTGCAGGATTCCTTCAATG TATGAAATATACTGCAAACTTTTGGAGATGCATCGAGGTTTACCCTACTG GCAATTGCAGATGTTGAATGAAGTTTATAATGTGAGATATAAAGCAAAAA ATGAAGTGTATTGTAGTTATGAACGtctatgaagaaaaaaac

Coding sequence (CDS) from alignment at sc0000019:328674..331115+

>TCONS_00002242 ID=TCONS_00002242|Name=TCONS_00002242|organism=Clytia hemisphaerica|type=CDS|length=990bp|location=Sequence derived from alignment at sc0000019:328674..331115+ (Clytia hemisphaerica)
ATGcagaaaattctttttgtaacgtttttatCAGTGCTTGTTATTCAATA
TGTAACATgtTACAAAGCGACGACATTGTCACCACAGAAACCCACGCCAA
CAATAGAAATTACGGCACCGAAACAAATATCTGACACTGACGAGATAGAT
ACAGAAGACGAAGATATGGAGCTTATCAAAGGTCGCGTCAAACGAGGATT
TAGAATCCGACGTCGGCGACGCAGTGACCCATGTCCAGGCAAGTGTGCAG
GATTCCTTCAATGTATGAAATATACTGCAAACTTTTGGAGATGCATCGAG
GTTTACCCTACTGGCAATTGCAGATGTTGAATGcagaaaattctttttgt
aacgtttttatCAGTGCTTGTTATTCAATATGTAACATgtTACAAAGCGA
CGACATTGTCACCACAGAAACCCACGCCAACAATAGAAATTACGGCACCG
AAACAAATATCTGACACTGACGAGATAGATACAGAAGACGAAGATATGGA
GCTTATCAAAGGTCGCGTCAAACGAGGATTTAGAATCCGACGTCGGCGAC
GCAGTGACCCATGTCCAGGCAAGTGTGCAGGATTCCTTCAATGTATGAAA
TATACTGCAAACTTTTGGAGATGCATCGAGGTTTACCCTACTGGCAATTG
CAGATGTTGAATGcagaaaattctttttgtaacgtttttatCAGTGCTTG
TTATTCAATATGTAACATgtTACAAAGCGACGACATTGTCACCACAGAAA
CCCACGCCAACAATAGAAATTACGGCACCGAAACAAATATCTGACACTGA
CGAGATAGATACAGAAGACGAAGATATGGAGCTTATCAAAGGTCGCGTCA
AACGAGGATTTAGAATCCGACGTCGGCGACGCAGTGACCCATGTCCAGGC
AAGTGTGCAGGATTCCTTCAATGTATGAAATATACTGCAAACTTTTGGAG
ATGCATCGAGGTTTACCCTACTGGCAATTGCAGATGTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001187XLOC_001187Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002242-proteinTCONS_00002242-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002242-exon-sc0000019-1491911889:328674..328704TCONS_00002242-exon-sc0000019-1491911889:328674..328704Clytia hemisphaericaexon
TCONS_00002242-exon-sc0000019-1510915933:328674..328704TCONS_00002242-exon-sc0000019-1510915933:328674..328704Clytia hemisphaericaexon
TCONS_00002242-exon-sc0000019-1575043694:328674..328704TCONS_00002242-exon-sc0000019-1575043694:328674..328704Clytia hemisphaericaexon
TCONS_00002242-exon-sc0000019-1491911889:328984..329178TCONS_00002242-exon-sc0000019-1491911889:328984..329178Clytia hemisphaericaexon
TCONS_00002242-exon-sc0000019-1510915933:328984..329178TCONS_00002242-exon-sc0000019-1510915933:328984..329178Clytia hemisphaericaexon
TCONS_00002242-exon-sc0000019-1575043694:328984..329178TCONS_00002242-exon-sc0000019-1575043694:328984..329178Clytia hemisphaericaexon
TCONS_00002242-exon-sc0000019-1491911889:329788..329886TCONS_00002242-exon-sc0000019-1491911889:329788..329886Clytia hemisphaericaexon
TCONS_00002242-exon-sc0000019-1510915933:329788..329886TCONS_00002242-exon-sc0000019-1510915933:329788..329886Clytia hemisphaericaexon
TCONS_00002242-exon-sc0000019-1575043694:329788..329886TCONS_00002242-exon-sc0000019-1575043694:329788..329886Clytia hemisphaericaexon
TCONS_00002242-exon-sc0000019-1491911889:330868..331115TCONS_00002242-exon-sc0000019-1491911889:330868..331115Clytia hemisphaericaexon
TCONS_00002242-exon-sc0000019-1510915933:330868..331115TCONS_00002242-exon-sc0000019-1510915933:330868..331115Clytia hemisphaericaexon
TCONS_00002242-exon-sc0000019-1575043694:330868..331115TCONS_00002242-exon-sc0000019-1575043694:330868..331115Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000019supercontigsc0000019:328674..331115 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.389865 0.285135 0.662138 0.539832 0.788633 0.727053 1.35333 2.90934 30.1805 81.2259 20.6324 10.8232 5.70432 12.7231 53.9449 39.7944 55.0497 54.3366 72.5733 94.2633 343.346 348.759 317.907 577.48 433.504 463.213 190.35 133.36 592.276 506.401
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00002242 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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