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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00002242 ID=TCONS_00002242|Name=TCONS_00002242|organism=Clytia hemisphaerica|type=transcript|length=573bp
TTTTGAATCACCCCACTCTTGAATCTCAAAGCCAGGGACTTTCTAAAATC
AACTTGACCAGAAACTATATAAAGAGTGAGAGTTATCGTGACCAAGCAGT
AATCAACAAACGATTTTCAAGCATCACATCACTCCAAGAGCAATATTTTT
TCGTTCAAAGAAGAAAAGATGcagaaaattctttttgtaacgtttttatC
AGTGCTTGTTATTCAATATGTAACATgtTACAAAGCGACGACATTGTCAC
CACAGAAACCCACGCCAACAATAGAAATTACGGCACCGAAACAAATATCT
GACACTGACGAGATAGATACAGAAGACGAAGATATGGAGCTTATCAAAGG
TCGCGTCAAACGAGGATTTAGAATCCGACGTCGGCGACGCAGTGACCCAT
GTCCAGGCAAGTGTGCAGGATTCCTTCAATGTATGAAATATACTGCAAAC
TTTTGGAGATGCATCGAGGTTTACCCTACTGGCAATTGCAGATGTTGAAT
GAAGTTTATAATGTGAGATATAAAGCAAAAAATGAAGTGTATTGTAGTTA
TGAACGtctatgaagaaaaaaac Run BLAST on NCBI protein sequence of TCONS_00002242-protein >TCONS_00002242-protein ID=TCONS_00002242-protein|Name=TCONS_00002242-protein|organism=Clytia hemisphaerica|type=polypeptide|length=109bp
MQKILFVTFLSVLVIQYVTCYKATTLSPQKPTPTIEITAPKQISDTDEID
TEDEDMELIKGRVKRGFRIRRRRRSDPCPGKCAGFLQCMKYTANFWRCIE
VYPTGNCRC Run BLAST on NCBI transcript from alignment at sc0000019:328674..331115+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00002242 ID=TCONS_00002242|Name=TCONS_00002242|organism=Clytia hemisphaerica|type=transcript|length=2442bp|location=Sequence derived from alignment at sc0000019:328674..331115+ (Clytia hemisphaerica)
TTTTGAATCACCCCACTCTTGAATCTCAAAGGTGATGTGTCATTtttgtc
attataaaaaaaacctcGCCTGAAAGGCTTTTGTCAATTTCTATTATTAA
AGCTTGACGTACCTTAAATGGGTTTGTGTNTCACAATCGAATTACAAATC
TTTGTGATCATCAAATCCAAACGAAAACTTCGAAAGTAGGAAGATTTTCT
TAGCTATCAAATTAGGATAATAAGGAGATAAAAGTTGTTTGTGGTTGTTT
ACACTTATTCTTTCAAACCAtcaataaagattttatttcattttgacgTC
TTTATTTTAGCCAGGGACTTTCTAAAATCAACTTGACCAGAAACTATATA
AAGAGTGAGAGTTATCGTGACCAAGCAGTAATCAACAAACGATTTTCAAG
CATCACATCACTCCAAGAGCAATATTTTTTCGTTCAAAGAAGAAAAGATG
cagaaaattctttttgtaacgtttttatCAGTGCTTGTTATTCAATATGT
AACATGTAAGTAACAATAGGATTTTTTTACATATCAATCCTAGTGATGGA
TATAGGGATTTGAGCATAGTCATTATATGAAACCCCGGTCTGCCGATGTA
TTATATGTATAgtaattttgttcaattttcttttgttacaaacaaaagac
aagttgcgatttgcatactttttgatcacgttaccaaaatctcctcttgg
gattggtctatactttctaatcacatgactaaaaagttgcaaaataaatc
gattttggtaagCAGTAAGCTTTACCTTctaacaataaaatttttattgt
tagaAGATAAAGCTTACTGCTTACCAAAATCTcttaaaaagagacaaaag
ccttccagaagggtgtttttataatgactatgatttGAGCTTACCACAGT
CTGCAAATGTTTTGATATAAGTCCCCAAAatctaacctgagatcagattg
tgaatgttttctgcacaccacgctgaagctctaaagggatgtgtgaaaac
aaaataatttcaagcgcctttagaggtttaccgtgcgcgtaagaaaatta
tgaacatctgttatcaggttaccaaAATCTTGTTGTAACCTAAatccaaa
tttttaatttcaaggtTACAAAGCGACGACATTGTCACCACAGAAACCCA
CGCCAACAATAGAAATTACGGCACCGAAACAAATATCTGACACTGACGAG
ATAGATACAGAAGGTGAGATTATATGACCCTAGAAGCCCgaggggggcac
tcgattttgaaaacgaccttacgttcggccaaaaatcaggtctttaaaat
cggacccttacaatgcatttggctgaaaatcgacccttatagtgcaaaaa
acctaccctttaAGGGCCGCACgcccggtaggtcacttacctggagtgcc
ccccccccgggcctagAAAACCAAAATGTTTTGTATCATAGGGTTATTAG
CCTCCTCAGGAGGAACAAATCTATTTAAGGATTTAAGTTTAGCTCGTTTG
ATATTCAGATGTTATATTGCTAACTATGAGAAAAGTTCTAAATAGCTTTA
GCGTCTGGGACAGAATTTTCAGCCTTTGGGCGTTGACAACGGAAAGTTTG
AGAGGGGGCTATCTAGGATAGATTAAACCTTCTTTATCatatgttttaaa
tttgaaactaaacctttggaaattcaatagattttctaaaataaatgATG
TGTCAAAAAATAAGCATCTCTATAGTCGAATCTCAGTTCGCAAATTGCAC
AGATCCGTAACGCTGCGAAATTCTGCATCTTTTAGCGTTGTGTTATTCCG
CAACGTTGCGAAATTCCGCAGCTTTACTGCTGCATAATTTCGCAGCTCTG
GCCTTTGGACCAAAATCGGCATCGTAGGGCCTGGACCGGGGTCCCAAAAT
AATGtgcattttgaagaacaacccaaaaggaaacttttcaccctagcatt
ttaatttcctCACCGCGATTATTCACAATCATTCTTGGAAGAAATACTAC
TTCGTTCAAAAAAGCGCTACTTTGTTCAAGAAAGCAAGTTTTTGCCTGAT
TCTGCATGTGTGTAGAAGAAAAGACCCTGGGGAAACGCTGCGAAAAACCG
CAACGTTGCGGAATATTGCAACGTTGCCGATCTATGCAATTTGCCGAACT
GATTTTCATTCATCTGTAgttcaagtttttttgttgttttatagACGAAG
ATATGGAGCTTATCAAAGGTCGCGTCAAACGAGGATTTAGAATCCGACGT
CGGCGACGCAGTGACCCATGTCCAGGCAAGTGTGCAGGATTCCTTCAATG
TATGAAATATACTGCAAACTTTTGGAGATGCATCGAGGTTTACCCTACTG
GCAATTGCAGATGTTGAATGAAGTTTATAATGTGAGATATAAAGCAAAAA
ATGAAGTGTATTGTAGTTATGAACGtctatgaagaaaaaaac Coding sequence (CDS) from alignment at sc0000019:328674..331115+ >TCONS_00002242 ID=TCONS_00002242|Name=TCONS_00002242|organism=Clytia hemisphaerica|type=CDS|length=990bp|location=Sequence derived from alignment at sc0000019:328674..331115+ (Clytia hemisphaerica)
ATGcagaaaattctttttgtaacgtttttatCAGTGCTTGTTATTCAATA
TGTAACATgtTACAAAGCGACGACATTGTCACCACAGAAACCCACGCCAA
CAATAGAAATTACGGCACCGAAACAAATATCTGACACTGACGAGATAGAT
ACAGAAGACGAAGATATGGAGCTTATCAAAGGTCGCGTCAAACGAGGATT
TAGAATCCGACGTCGGCGACGCAGTGACCCATGTCCAGGCAAGTGTGCAG
GATTCCTTCAATGTATGAAATATACTGCAAACTTTTGGAGATGCATCGAG
GTTTACCCTACTGGCAATTGCAGATGTTGAATGcagaaaattctttttgt
aacgtttttatCAGTGCTTGTTATTCAATATGTAACATgtTACAAAGCGA
CGACATTGTCACCACAGAAACCCACGCCAACAATAGAAATTACGGCACCG
AAACAAATATCTGACACTGACGAGATAGATACAGAAGACGAAGATATGGA
GCTTATCAAAGGTCGCGTCAAACGAGGATTTAGAATCCGACGTCGGCGAC
GCAGTGACCCATGTCCAGGCAAGTGTGCAGGATTCCTTCAATGTATGAAA
TATACTGCAAACTTTTGGAGATGCATCGAGGTTTACCCTACTGGCAATTG
CAGATGTTGAATGcagaaaattctttttgtaacgtttttatCAGTGCTTG
TTATTCAATATGTAACATgtTACAAAGCGACGACATTGTCACCACAGAAA
CCCACGCCAACAATAGAAATTACGGCACCGAAACAAATATCTGACACTGA
CGAGATAGATACAGAAGACGAAGATATGGAGCTTATCAAAGGTCGCGTCA
AACGAGGATTTAGAATCCGACGTCGGCGACGCAGTGACCCATGTCCAGGC
AAGTGTGCAGGATTCCTTCAATGTATGAAATATACTGCAAACTTTTGGAG
ATGCATCGAGGTTTACCCTACTGGCAATTGCAGATGTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00002242-exon-sc0000019-1491911889:328674..328704 | TCONS_00002242-exon-sc0000019-1491911889:328674..328704 | Clytia hemisphaerica | exon |
| TCONS_00002242-exon-sc0000019-1510915933:328674..328704 | TCONS_00002242-exon-sc0000019-1510915933:328674..328704 | Clytia hemisphaerica | exon |
| TCONS_00002242-exon-sc0000019-1575043694:328674..328704 | TCONS_00002242-exon-sc0000019-1575043694:328674..328704 | Clytia hemisphaerica | exon |
| TCONS_00002242-exon-sc0000019-1491911889:328984..329178 | TCONS_00002242-exon-sc0000019-1491911889:328984..329178 | Clytia hemisphaerica | exon |
| TCONS_00002242-exon-sc0000019-1510915933:328984..329178 | TCONS_00002242-exon-sc0000019-1510915933:328984..329178 | Clytia hemisphaerica | exon |
| TCONS_00002242-exon-sc0000019-1575043694:328984..329178 | TCONS_00002242-exon-sc0000019-1575043694:328984..329178 | Clytia hemisphaerica | exon |
| TCONS_00002242-exon-sc0000019-1491911889:329788..329886 | TCONS_00002242-exon-sc0000019-1491911889:329788..329886 | Clytia hemisphaerica | exon |
| TCONS_00002242-exon-sc0000019-1510915933:329788..329886 | TCONS_00002242-exon-sc0000019-1510915933:329788..329886 | Clytia hemisphaerica | exon |
| TCONS_00002242-exon-sc0000019-1575043694:329788..329886 | TCONS_00002242-exon-sc0000019-1575043694:329788..329886 | Clytia hemisphaerica | exon |
| TCONS_00002242-exon-sc0000019-1491911889:330868..331115 | TCONS_00002242-exon-sc0000019-1491911889:330868..331115 | Clytia hemisphaerica | exon |
| TCONS_00002242-exon-sc0000019-1510915933:330868..331115 | TCONS_00002242-exon-sc0000019-1510915933:330868..331115 | Clytia hemisphaerica | exon |
| TCONS_00002242-exon-sc0000019-1575043694:330868..331115 | TCONS_00002242-exon-sc0000019-1575043694:330868..331115 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000019 | supercontig | sc0000019:328674..331115 + |
Blast
The following BLAST results are available for this feature:
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