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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00002240 ID=TCONS_00002240|Name=TCONS_00002240|organism=Clytia hemisphaerica|type=transcript|length=2110bpRun BLAST on NCBI protein sequence of TCONS_00002240-protein >TCONS_00002240-protein ID=TCONS_00002240-protein|Name=TCONS_00002240-protein|organism=Clytia hemisphaerica|type=polypeptide|length=339bp MSTTNKKFFSLECAVQNYHWGKFGEQSTVASLGRMQKNFNFDAEKHYAELRun BLAST on NCBI transcript from alignment at sc0000019:286712..316441+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00002240 ID=TCONS_00002240|Name=TCONS_00002240|organism=Clytia hemisphaerica|type=transcript|length=29730bp|location=Sequence derived from alignment at sc0000019:286712..316441+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000019:286712..316441+ >TCONS_00002240 ID=TCONS_00002240|Name=TCONS_00002240|organism=Clytia hemisphaerica|type=CDS|length=6120bp|location=Sequence derived from alignment at sc0000019:286712..316441+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00002240 vs. Swiss-Prot (Human)
Match: MPI (Mannose-6-phosphate isomerase OS=Homo sapiens GN=MPI PE=1 SV=2) HSP 1 Score: 298.516 bits (763), Expect = 7.375e-93 Identity = 157/323 (48.61%), Postives = 200/323 (61.92%), Query Frame = 3
Query: 171 KFFSLECAVQNYHWGKFGEQSTVASLGRMQKNFNFDAE-KHYAELWMGDHHRGPS-IVQNMSEPTTLTQLLQNNPSLVGENIIKRFGKANLPFLFKVLSVETALSIQAHPNKEHAEILNRTRPDVYQDDNHKPEIAIAITPFEALCGFRPASEILSYFHEVEELLFVVGQKAVDELINAEMATDKKAKDEAVRRAIKGCLSQLMACDPNTIKEQLAKLITRLNECHKKHEDTSLYLGRLLLRVHSQYPGDVGCFVIYFLNYIQLEPFESIFLGPDVPHAYIYGDIIECMANSDNVVRAGFTPKFKDVDTLIEMLDYKPQTVEE 1133
+ F L CAVQ Y WGK G S VA L AE K YAELWMG H RG + I+ N TL+Q + N +G + F NLPFLFKVLSVET LSIQAHPNKE AE L+ P Y D NHKPE+AIA+TPF+ LCGFRP EI+++ +V E F++G +A L M+ D +AV +++ C S LM + + EQL L+ R+++ + G LLL++H QYPGD+GCF IYFLN + L+P E++FL +VPHAY+ GD +ECMA SDN VRAG TPKF DV TL EML Y P + ++
Sbjct: 5 RVFPLSCAVQQYAWGKMGSNSEVARLLASSDPLAQIAEDKPYAELWMGTHPRGDAKILDNRISQKTLSQWIAENQDSLGSKVKDTFN-GNLPFLFKVLSVETPLSIQAHPNKELAEKLHLQAPQHYPDANHKPEMAIALTPFQGLCGFRPVEEIVTFLKKVPEFQFLIGDEAATHL-KQTMSHD----SQAVASSLQSCFSHLMKSEKKVVVEQLNLLVKRISQQAAAGNNMEDIFGELLLQLHQQYPGDIGCFAIYFLNLLTLKPGEAMFLEANVPHAYLKGDCVECMACSDNTVRAGLTPKFIDVPTLCEMLSYTPSSSKD 321 The following BLAST results are available for this feature:
BLAST of TCONS_00002240 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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