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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00002233 ID=TCONS_00002233|Name=TCONS_00002233|organism=Clytia hemisphaerica|type=transcript|length=1980bpRun BLAST on NCBI protein sequence of TCONS_00002233-protein >TCONS_00002233-protein ID=TCONS_00002233-protein|Name=TCONS_00002233-protein|organism=Clytia hemisphaerica|type=polypeptide|length=415bp MKLRRFLLRYYPPGIILEYEQSKSMKTKSIDLLELKPESDVDAILEELTVRun BLAST on NCBI transcript from alignment at sc0000019:215955..262671+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00002233 ID=TCONS_00002233|Name=TCONS_00002233|organism=Clytia hemisphaerica|type=transcript|length=46717bp|location=Sequence derived from alignment at sc0000019:215955..262671+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000019:215955..262671+ >TCONS_00002233 ID=TCONS_00002233|Name=TCONS_00002233|organism=Clytia hemisphaerica|type=CDS|length=19968bp|location=Sequence derived from alignment at sc0000019:215955..262671+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00002233 vs. Swiss-Prot (Human)
Match: DAW1 (Dynein assembly factor with WDR repeat domains 1 OS=Homo sapiens GN=DAW1 PE=1 SV=1) HSP 1 Score: 638.647 bits (1646), Expect = 0.000e+0 Identity = 290/415 (69.88%), Postives = 352/415 (84.82%), Query Frame = 3
Query: 261 MKLRRFLLRYYPPGIILEYEQSKSMKTKSIDLLELKPESDVDAILEELTVREPLITSSRAKQVRNLIIKLQEKLASTSTSTFYLFKVLRAHILPLTNVAFNKNGSSFITGSYDRTCKVWDTSSGEELYTLEGHRNVVYAVAFNNPYGDKVATGSFDKTCKLWSAETGKCYHTFKGHLAEIVCVTFNPQSTIVATGSMDNTAKLWDVQKGNEIATLNGHSAEIICLTFNTTGEQLLTGSFDHTCNVWDVQAGRRLHTLIGHRGEISNCTFNFDGSLIVSASMDQTCRIWDADNGKCIGTLRGHGEEVLDVTFDATGQYIVACSADGIGRVYNSTTQQCICKLEGHEGEISKVVFNPQGTRVLTASSDHTARLWDPITGECLQVLEGHTEEIFSCAFNYEGNIILTGSKDNTCRLWR 1505
MKL+ LLRYYPPGI+LEYE+ +KTKSIDLL+L P +DV A++EE+ EPL+T+SR +QV+ LI +LQEKL S TFYLFKVL+AHILPLTNVA NK+GS FITGSYDRTCK+WDT+SGEEL TLEGHRNVVYA+AFNNPYGDK+ATGSFDKTCKLWS ETGKCYHTF+GH AEIVC++FNPQST+VATGSMD TAKLWD+Q G E+ TL GHSAEII L+FNT+G++++TGSFDHT VWD GR+++ LIGH EIS+ +FN+D SLI++ SMD+TC++WDA NGKC+ TL GH +E+LD FD TG+ I SADG R++++ T++CI KLEGHEGEISK+ FNPQG +LT SSD TAR+WD TG+CLQVLEGHT+EIFSCAFNY+GNI++TGSKDNTCR+WR
Sbjct: 1 MKLKSLLLRYYPPGIMLEYEKHGELKTKSIDLLDLGPSTDVSALVEEIQKAEPLLTASRTEQVKLLIQRLQEKLGQNSNHTFYLFKVLKAHILPLTNVALNKSGSCFITGSYDRTCKLWDTASGEELNTLEGHRNVVYAIAFNNPYGDKIATGSFDKTCKLWSVETGKCYHTFRGHTAEIVCLSFNPQSTLVATGSMDTTAKLWDIQNGEEVYTLRGHSAEIISLSFNTSGDRIITGSFDHTVVVWDADTGRKVNILIGHCAEISSASFNWDCSLILTGSMDKTCKLWDATNGKCVATLTGHDDEILDSCFDYTGKLIATASADGTARIFSAATRKCIAKLEGHEGEISKISFNPQGNHLLTGSSDKTARIWDAQTGQCLQVLEGHTDEIFSCAFNYKGNIVITGSKDNTCRIWR 415 The following BLAST results are available for this feature:
BLAST of TCONS_00002233 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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