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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00002230 ID=TCONS_00002230|Name=TCONS_00002230|organism=Clytia hemisphaerica|type=transcript|length=2914bpRun BLAST on NCBI protein sequence of TCONS_00002230-protein >TCONS_00002230-protein ID=TCONS_00002230-protein|Name=TCONS_00002230-protein|organism=Clytia hemisphaerica|type=polypeptide|length=672bp FWQFETNNLMVLISKWNKNKKSKLTYKNNTHKDKMGYKNFKNQDFKSIKSRun BLAST on NCBI transcript from alignment at sc0000019:64612..97136+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00002230 ID=TCONS_00002230|Name=TCONS_00002230|organism=Clytia hemisphaerica|type=transcript|length=32525bp|location=Sequence derived from alignment at sc0000019:64612..97136+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000019:64612..97136+ >TCONS_00002230 ID=TCONS_00002230|Name=TCONS_00002230|organism=Clytia hemisphaerica|type=CDS|length=28266bp|location=Sequence derived from alignment at sc0000019:64612..97136+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00002230 vs. Swiss-Prot (Human)
Match: CAN5 (Calpain-5 OS=Homo sapiens GN=CAPN5 PE=1 SV=2) HSP 1 Score: 600.897 bits (1548), Expect = 0.000e+0 Identity = 298/643 (46.35%), Postives = 415/643 (64.54%), Query Frame = 3
Query: 114 KNFKNQDFKSIKSQCASNNQLFEDPEFPANDRALYFSKQPSFKAEWKRPKELCDEPHMFVQGADAADVTQGRVGNCWFVAAAACLALEKDLWKKVIPDYKEQIFSPEKPEDYQGIFHFRFWRFGEWTDVVIDDRLPTINGELIYVKSKAKNEFWSALLEKAYAKMSGSYEALESGNPADALVDFTGGTSETIDLVKGGYKDDLEKRKELHQKLVKLLSRNAMASASIKVTNRDEMEKQLDTGLVKGHAYGLSDVKKIEKG---MFSSESDKIYLVKLRNPWGEKEWNGPWSDGSTEWNTLSQKDKDKIGVKVENDGEFWMSFEDFCTQFTTVTICMLVNTSMFTIHKTYNEGFYKGSW------EGRNAGGCVNNKETFLHNPQIKFDMTGSKLKDVAFISLMQPDMRALKHEGKANN-TMGFHVMRVEGNRSYRVHQNYEKAGDSSFINSREIFARLELDPGRYIIVPSTFEPNTSGQFLLRVYTDHSNHMRPLVEEKPEPGCLSCLPCCKPPGVQLSVTVTEVNNLKKKGSMSMTVDPYVVIECEGTKVSSYHLTDNVNPKISYGGLFYVKKPDSTYKVQVWDHNVIKDTFLGETTEQTIDVNNKLVQITHQLMDKKDRNGEQPK-ADGTVTIRVAASSNL 2009
K +++Q++ +++ C LFEDP FPA D +LY+ P WKRPK +C++P +FV G + D+ QG+VGNCWFVAA + LA + LW+KVIPD+KEQ + PEKP Y GIFHF FWRFGEW DVVIDDRLPT+N +LIY S ++NEFW AL+EKAYAK++G Y+AL+ GN ADALVDFTGG SE IDL +G + +D KR +L ++++K+ SR + SASIK +ME +L GLVKGHAY ++DV+K+ G + +S+K+ +++LRNPWGE+EWNGPWSD S EW +S+ +++K+GV V++DGEFWM+FED C FT + C ++NTS +IHKT+ E G+W GGC+N+K+TF NPQ F++ K +D I + Q R+ + EGK N +GF + +VE NR YR+H KA S +INSR +F R + GRY+I+P+TFEP +G+FLLRV+TD ++ R L ++P C S L C P + V V LK + + + YV+I+CEG KV S P+ + G+FY KK VQVW+H V+KD FLG+ + D +N +Q H L +DRN QP GTV + + +S++L
Sbjct: 6 KPYEDQNYSALRRDCRRRKVLFEDPLFPATDDSLYYKGTPGPAVRWKRPKGICEDPRLFVDGISSHDLHQGQVGNCWFVAACSSLASRESLWQKVIPDWKEQEWDPEKPNAYAGIFHFHFWRFGEWVDVVIDDRLPTVNNQLIYCHSNSRNEFWCALVEKAYAKLAGCYQALDGGNTADALVDFTGGVSEPIDLTEGDFANDETKRNQLFERMLKVHSRGGLISASIKAVTAADMEARLACGLVKGHAYAVTDVRKVRLGHGLLAFFKSEKLDMIRLRNPWGEREWNGPWSDTSEEWQKVSKSEREKMGVTVQDDGEFWMTFEDVCRYFTDIIKCRVINTSHLSIHKTWEEARLHGAWTLHEDPRQNRGGGCINHKDTFFQNPQYIFEV--KKPEDEVLICIQQRPKRSTRREGKGENLAIGFDIYKVEENRQYRMHSLQHKAASSIYINSRSVFLRTDQPEGRYVIIPTTFEPGHTGEFLLRVFTDVPSNCRELRLDEPPHTCWSSL--CGYPQLVTQVHVLGAAGLKDSPTGA---NSYVIIKCEGDKVRSAVQKGTSTPEYNVKGIFYRKKLSQPITVQVWNHRVLKDEFLGQVHLKA-DPDN--LQALHTL-HLRDRNSRQPSNLPGTVAVHILSSTSL 637 The following BLAST results are available for this feature:
BLAST of TCONS_00002230 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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