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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00002213 ID=TCONS_00002213|Name=TCONS_00002213|organism=Clytia hemisphaerica|type=transcript|length=2783bp TTTTCTTTCTACTACTGAAAACGAATAAAAATATAATCCTTGCGGAAAAA CCATTATTCTAGACTAGAGTCTTACTTATGATTAAGCTTTGCTTCCTGat aattttgatgacgtttATCGTCCAGTGCAGTAGACTAGTAGCATTTGAGA CGGTAATTCGCTatttagaaagaaaaatatatatttggagTTGAGAATTA TAATTAGGAATAGTAAATAAACATAATAGACTAGATGTGAAGAAGACTCG CAATACCCTATTTTCAAATAAGAACAttgtttcattctatttttacctCC AAagaatctggcggactgttttacagttaATGAGGGTTGCCGCTGAGGGG CTCGTTTatattttgaaacgaaaaaCAAAACGAATCAATTAGCTTGAGTT TTACATTCCAATAAAACTATGTCAGATTTGTGCATTGACACTGTCTTATC TAAAGTCTGTTCCGAAAAAATGGACAGTTCGTATTTTTTAAATACTGATT TTGAGGGCAAAAACATATCACTGAAAATAATGCATTTTTCATCTACACCA TCAATATTCAATCCACTTGAAACTATCATTCCAATGAGGTATTTTTTTAG TGATATCGTCTCTTCCTAAAGAgctatacatattttttttataagcattg cacttataagtatatctaggctcagatatggggaaaaactaagcatatgg caagcattacttgagcctacgaaaaatgttttttttcctgattttggctt tttttggctggaattttacagattttcagtctttccctaaatttatgctt tagatttaagcatcccctcaagcatttttcagcccttattaagctttcga cctaagcatctctgagcctgttttcggatttctgtatgcttataaaaaaa aacatgtaaacgGACTGTCCATTTTATCAGCGCAGACTTTGACAAAAATT GACAAGAACTATATTTTCAAGCAAGTATCTGGATATTTGGAGCATACCAA ATCATCAAAGACTGCCAATCGGTTTGGTATAGTTTGCTTAATTAATAGGC TTTGAGCTGAATTTGGATCTTGTCGCACTTTCAACCATGGTACAAAGCTT TCAGAGACATCTTCGTGTTTCGGGCTACCTTTGGCGTACGAGGAGATAAA TAAAGGATCCAATGTTTGAGCTGTCTTCCATTTCTGGCTGTTCTGGATAT CTAACATACCAACATGAGCTCCTTCATGTAAAAAGAGAGTGAACGCATTA TTGATATGCGAGGGCGTCAAATTCACAGTCATGCTCTTACGCCAGCTGTT AGCGCCCGCTCTTGATCCTTGACCACCACCATTGATAGCGATGGTTTTTA ACCACGATCGAGCGAATTTAGGAAGTTGGCCAAGTGTTCGCAACAAATCA GATGCTTTGGTAGTAGCATCTTGTTGAGAACTAAAATCCTTGGTAGGGCA GGTCACTTCAAATGAATGCCCATCTGAGAAACGAGCTGTGAACGTGTAGC AATCATCTTTGTTCCATTTTCCATTGCNCATACCAAATCATCAAAGACTG CCAATCGGTTTGGTATAGTTTGCTTAATTAATAAGCTTTGAGCTGAATTT GGATCTTGTCGCACTTTCAACCATGGTACAAAGCTTTCAGAGACATCTTC GTGTTTCGGGCTACCTTTGGCGTAAGAGGAGATAAATAAAGGATCCAATG TTTGAGCTGTCTTCCATTTCTGGCTGTTCTGGATATCTAACATACCAACA TGAGCTCCTTCATGTAAAAAGAGAGTGAACGCATTATTGATATGCGAGGG CGTCAAATTCACAGTCATGCTCTTACGCCAGCTGTTAGCGCCCGCTCTTG ATCCTTGACCACCACCATTGATAGCGATGGTTTTTAACCACGATCGAGCG AATTTAGGAAGTTGGCCAAGTGTTCGCAACAAAGCAGATGCTTTGGTAGT AGCATCTTGTTGAGAACTAAAATCCTTGGTAGGGCAGGTCACTTCAAATG AATGCCCATCTGAGAAACGAGCTGTGAACGTGTAGCAATCATCTTTGTTC CATTTTCCATTGCGGTAATCCCAGTATTGGCCATGGATAGCTCCGCCTTT TGTGATTCCTTGATAGatcaaactttgaaaagttGATTGAAGAAACGGTA CTGGTTTGACTTGATAAACGGTTCCATAGTACGGTGCTTGATCGGTTTTC AGGGATTGCCGTTTGGGTCCGGACAACTCGCAATAACCATTACTTACGGT CACGGCCATCTTCACCATCACATCTGATCATATTCGGAAATCCTTGGTAC TGAAGATGTTCTTGTAGGTTTGTTTTTTGTGAAGTCAACACAAATGCTTT GCTGCCCTTATAAGACCATGTTTCATACATATAACGGCCGTTCACATTTT GTTGGGAGGAGACTTTAATGTAGGCTTTAGAGCTAGATTTACCTTTAACC CATGCGTAGCCAATCCTTTCGTTTAAATCATGAACTTGAAAGGAACCAGG GGTACAAGTTCCTCTTATGCCATGTGCTCGGAGACCTTTCGAAGTGTCTG CATAAAAGACATTGATTAAGTAACGACCATTGTTATCATTTCGGTTTAAA CAGTCCACCACCAGCTTGTTCTGGTAAGCTGCTTGCGTTTTTGTAACAAA AATCACCAGAATAAATAAAAGATTGCAGAGCATGATCATCTTTGAAAAGA AGTTTGCAACTGAAATTTGACCGCATCGAAAACTGCTTTTTTATAGGGTT GAAAGCATAAACATATACACGGAGACAAAATTC Run BLAST on NCBI protein sequence of TCONS_00002213-protein >TCONS_00002213-protein ID=TCONS_00002213-protein|Name=TCONS_00002213-protein|organism=Clytia hemisphaerica|type=polypeptide|length=271bp
MVKMAVTVSNGYCELSGPKRQSLKTDQAPYYGTVYQVKPVPFLQSTFQSL IYQGITKGGAIHGQYWDYRNGKWNKDDCYTFTARFSDGHSFEVTCPTKDF SSQQDATTKASALLRTLGQLPKFARSWLKTIAINGGGQGSRAGANSWRKS MTVNLTPSHINNAFTLFLHEGAHVGMLDIQNSQKWKTAQTLDPLFISSYA KGSPKHEDVSESFVPWLKVRQDPNSAQSLLIKQTIPNRLAVFDDLVXAME NGTKMIATRSQLVSQMGIHLK Run BLAST on NCBI transcript from alignment at sc0000018:595593..598375 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00002213 ID=TCONS_00002213|Name=TCONS_00002213|organism=Clytia hemisphaerica|type=transcript|length=2783bp|location=Sequence derived from alignment at sc0000018:595593..598375 (Clytia hemisphaerica) GAATTTTGTCTCCGTGTATATGTTTATGCTTTCAACCCTATAAAAAAGCA
GTTTTCGATGCGGTCAAATTTCAGTTGCAAACTTCTTTTCAAAGATGATC
ATGCTCTGCAATCTTTTATTTATTCTGGTGATTTTTGTTACAAAAACGCA
AGCAGCTTACCAGAACAAGCTGGTGGTGGACTGTTTAAACCGAAATGATA
ACAATGGTCGTTACTTAATCAATGTCTTTTATGCAGACACTTCGAAAGGT
CTCCGAGCACATGGCATAAGAGGAACTTGTACCCCTGGTTCCTTTCAAGT
TCATGATTTAAACGAAAGGATTGGCTACGCATGGGTTAAAGGTAAATCTA
GCTCTAAAGCCTACATTAAAGTCTCCTCCCAACAAAATGTGAACGGCCGT
TATATGTATGAAACATGGTCTTATAAGGGCAGCAAAGCATTTGTGTTGAC
TTCACAAAAAACAAACCTACAAGAACATCTTCAGTACCAAGGATTTCCGA
ATATGATCAGATGTGATGGTGAAGATGGCCGTGACCGTAAGTAATGGTTA
TTGCGAGTTGTCCGGACCCAAACGGCAATCCCTGAAAACCGATCAAGCAC
CGTACTATGGAACCGTTTATCAAGTCAAACCAGTACCGTTTCTTCAATCa
acttttcaaagtttgatCTATCAAGGAATCACAAAAGGCGGAGCTATCCA
TGGCCAATACTGGGATTACCGCAATGGAAAATGGAACAAAGATGATTGCT
ACACGTTCACAGCTCGTTTCTCAGATGGGCATTCATTTGAAGTGACCTGC
CCTACCAAGGATTTTAGTTCTCAACAAGATGCTACTACCAAAGCATCTGC
TTTGTTGCGAACACTTGGCCAACTTCCTAAATTCGCTCGATCGTGGTTAA
AAACCATCGCTATCAATGGTGGTGGTCAAGGATCAAGAGCGGGCGCTAAC
AGCTGGCGTAAGAGCATGACTGTGAATTTGACGCCCTCGCATATCAATAA
TGCGTTCACTCTCTTTTTACATGAAGGAGCTCATGTTGGTATGTTAGATA
TCCAGAACAGCCAGAAATGGAAGACAGCTCAAACATTGGATCCTTTATTT
ATCTCCTCTTACGCCAAAGGTAGCCCGAAACACGAAGATGTCTCTGAAAG
CTTTGTACCATGGTTGAAAGTGCGACAAGATCCAAATTCAGCTCAAAGCT
TATTAATTAAGCAAACTATACCAAACCGATTGGCAGTCTTTGATGATTTG
GTATGNGCAATGGAAAATGGAACAAAGATGATTGCTACACGTTCACAGCT
CGTTTCTCAGATGGGCATTCATTTGAAGTGACCTGCCCTACCAAGGATTT
TAGTTCTCAACAAGATGCTACTACCAAAGCATCTGATTTGTTGCGAACAC
TTGGCCAACTTCCTAAATTCGCTCGATCGTGGTTAAAAACCATCGCTATC
AATGGTGGTGGTCAAGGATCAAGAGCGGGCGCTAACAGCTGGCGTAAGAG
CATGACTGTGAATTTGACGCCCTCGCATATCAATAATGCGTTCACTCTCT
TTTTACATGAAGGAGCTCATGTTGGTATGTTAGATATCCAGAACAGCCAG
AAATGGAAGACAGCTCAAACATTGGATCCTTTATTTATCTCCTCGTACGC
CAAAGGTAGCCCGAAACACGAAGATGTCTCTGAAAGCTTTGTACCATGGT
TGAAAGTGCGACAAGATCCAAATTCAGCTCAAAGCCTATTAATTAAGCAA
ACTATACCAAACCGATTGGCAGTCTTTGATGATTTGGTATGCTCCAAATA
TCCAGATACTTGCTTGAAAATATAGTTCTTGTCAATTTTTGTCAAAGTCT
GCGCTGATAAAATGGACAGTCcgtttacatgtttttttttataagcatac
agaaatccgaaaacaggctcagagatgcttaggtcgaaagcttaataagg
gctgaaaaatgcttgaggggatgcttaaatctaaagcataaatttaggga
aagactgaaaatctgtaaaattccagccaaaaaaagccaaaatcaggaaa
aaaaacatttttcgtaggctcaagtaatgcttgccatatgcttagttttt
ccccatatctgagcctagatatacttataagtgcaatgcttataaaaaaa
atatgtatagcTCTTTAGGAAGAGACGATATCACTAAAAAAATACCTCAT
TGGAATGATAGTTTCAAGTGGATTGAATATTGATGGTGTAGATGAAAAAT
GCATTATTTTCAGTGATATGTTTTTGCCCTCAAAATCAGTATTTAAAAAA
TACGAACTGTCCATTTTTTCGGAACAGACTTTAGATAAGACAGTGTCAAT
GCACAAATCTGACATAGTTTTATTGGAATGTAAAACTCAAGCTAATTGAT
TCGTTTTGtttttcgtttcaaaatatAAACGAGCCCCTCAGCGGCAACCC
TCATtaactgtaaaacagtccgccagattctTTGGaggtaaaaatagaat
gaaacaaTGTTCTTATTTGAAAATAGGGTATTGCGAGTCTTCTTCACATC
TAGTCTATTATGTTTATTTACTATTCCTAATTATAATTCTCAActccaaa
tatatatttttctttctaaatAGCGAATTACCGTCTCAAATGCTACTAGT
CTACTGCACTGGACGATaaacgtcatcaaaattatCAGGAAGCAAAGCTT
AATCATAAGTAAGACTCTAGTCTAGAATAATGGTTTTTCCGCAAGGATTA
TATTTTTATTCGTTTTCAGTAGTAGAAAGAAAA Coding sequence (CDS) from alignment at sc0000018:595593..598375 >TCONS_00002213 ID=TCONS_00002213|Name=TCONS_00002213|organism=Clytia hemisphaerica|type=CDS|length=816bp|location=Sequence derived from alignment at sc0000018:595593..598375 (Clytia hemisphaerica) ATGGTGAAGATGGCCGTGACCGTAAGTAATGGTTATTGCGAGTTGTCCGG ACCCAAACGGCAATCCCTGAAAACCGATCAAGCACCGTACTATGGAACCG TTTATCAAGTCAAACCAGTACCGTTTCTTCAATCaacttttcaaagtttg atCTATCAAGGAATCACAAAAGGCGGAGCTATCCATGGCCAATACTGGGA TTACCGCAATGGAAAATGGAACAAAGATGATTGCTACACGTTCACAGCTC GTTTCTCAGATGGGCATTCATTTGAAGTGACCTGCCCTACCAAGGATTTT AGTTCTCAACAAGATGCTACTACCAAAGCATCTGCTTTGTTGCGAACACT TGGCCAACTTCCTAAATTCGCTCGATCGTGGTTAAAAACCATCGCTATCA ATGGTGGTGGTCAAGGATCAAGAGCGGGCGCTAACAGCTGGCGTAAGAGC ATGACTGTGAATTTGACGCCCTCGCATATCAATAATGCGTTCACTCTCTT TTTACATGAAGGAGCTCATGTTGGTATGTTAGATATCCAGAACAGCCAGA AATGGAAGACAGCTCAAACATTGGATCCTTTATTTATCTCCTCTTACGCC AAAGGTAGCCCGAAACACGAAGATGTCTCTGAAAGCTTTGTACCATGGTT GAAAGTGCGACAAGATCCAAATTCAGCTCAAAGCTTATTAATTAAGCAAA CTATACCAAACCGATTGGCAGTCTTTGATGATTTGGTATGNGCAATGGAA AATGGAACAAAGATGATTGCTACACGTTCACAGCTCGTTTCTCAGATGGG CATTCATTTGAAGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00002213-exon-sc0000018-1491911889:595593..598375 | TCONS_00002213-exon-sc0000018-1491911889:595593..598375 | Clytia hemisphaerica | exon |
TCONS_00002213-exon-sc0000018-1510915933:595593..598375 | TCONS_00002213-exon-sc0000018-1510915933:595593..598375 | Clytia hemisphaerica | exon |
TCONS_00002213-exon-sc0000018-1575043694:595593..598375 | TCONS_00002213-exon-sc0000018-1575043694:595593..598375 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
sc0000018 | supercontig | sc0000018:595593..598375 . |
Blast
The following BLAST results are available for this feature:
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