|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00002213 ID=TCONS_00002213|Name=TCONS_00002213|organism=Clytia hemisphaerica|type=transcript|length=2783bp
TTTTCTTTCTACTACTGAAAACGAATAAAAATATAATCCTTGCGGAAAAA
CCATTATTCTAGACTAGAGTCTTACTTATGATTAAGCTTTGCTTCCTGat
aattttgatgacgtttATCGTCCAGTGCAGTAGACTAGTAGCATTTGAGA
CGGTAATTCGCTatttagaaagaaaaatatatatttggagTTGAGAATTA
TAATTAGGAATAGTAAATAAACATAATAGACTAGATGTGAAGAAGACTCG
CAATACCCTATTTTCAAATAAGAACAttgtttcattctatttttacctCC
AAagaatctggcggactgttttacagttaATGAGGGTTGCCGCTGAGGGG
CTCGTTTatattttgaaacgaaaaaCAAAACGAATCAATTAGCTTGAGTT
TTACATTCCAATAAAACTATGTCAGATTTGTGCATTGACACTGTCTTATC
TAAAGTCTGTTCCGAAAAAATGGACAGTTCGTATTTTTTAAATACTGATT
TTGAGGGCAAAAACATATCACTGAAAATAATGCATTTTTCATCTACACCA
TCAATATTCAATCCACTTGAAACTATCATTCCAATGAGGTATTTTTTTAG
TGATATCGTCTCTTCCTAAAGAgctatacatattttttttataagcattg
cacttataagtatatctaggctcagatatggggaaaaactaagcatatgg
caagcattacttgagcctacgaaaaatgttttttttcctgattttggctt
tttttggctggaattttacagattttcagtctttccctaaatttatgctt
tagatttaagcatcccctcaagcatttttcagcccttattaagctttcga
cctaagcatctctgagcctgttttcggatttctgtatgcttataaaaaaa
aacatgtaaacgGACTGTCCATTTTATCAGCGCAGACTTTGACAAAAATT
GACAAGAACTATATTTTCAAGCAAGTATCTGGATATTTGGAGCATACCAA
ATCATCAAAGACTGCCAATCGGTTTGGTATAGTTTGCTTAATTAATAGGC
TTTGAGCTGAATTTGGATCTTGTCGCACTTTCAACCATGGTACAAAGCTT
TCAGAGACATCTTCGTGTTTCGGGCTACCTTTGGCGTACGAGGAGATAAA
TAAAGGATCCAATGTTTGAGCTGTCTTCCATTTCTGGCTGTTCTGGATAT
CTAACATACCAACATGAGCTCCTTCATGTAAAAAGAGAGTGAACGCATTA
TTGATATGCGAGGGCGTCAAATTCACAGTCATGCTCTTACGCCAGCTGTT
AGCGCCCGCTCTTGATCCTTGACCACCACCATTGATAGCGATGGTTTTTA
ACCACGATCGAGCGAATTTAGGAAGTTGGCCAAGTGTTCGCAACAAATCA
GATGCTTTGGTAGTAGCATCTTGTTGAGAACTAAAATCCTTGGTAGGGCA
GGTCACTTCAAATGAATGCCCATCTGAGAAACGAGCTGTGAACGTGTAGC
AATCATCTTTGTTCCATTTTCCATTGCNCATACCAAATCATCAAAGACTG
CCAATCGGTTTGGTATAGTTTGCTTAATTAATAAGCTTTGAGCTGAATTT
GGATCTTGTCGCACTTTCAACCATGGTACAAAGCTTTCAGAGACATCTTC
GTGTTTCGGGCTACCTTTGGCGTAAGAGGAGATAAATAAAGGATCCAATG
TTTGAGCTGTCTTCCATTTCTGGCTGTTCTGGATATCTAACATACCAACA
TGAGCTCCTTCATGTAAAAAGAGAGTGAACGCATTATTGATATGCGAGGG
CGTCAAATTCACAGTCATGCTCTTACGCCAGCTGTTAGCGCCCGCTCTTG
ATCCTTGACCACCACCATTGATAGCGATGGTTTTTAACCACGATCGAGCG
AATTTAGGAAGTTGGCCAAGTGTTCGCAACAAAGCAGATGCTTTGGTAGT
AGCATCTTGTTGAGAACTAAAATCCTTGGTAGGGCAGGTCACTTCAAATG
AATGCCCATCTGAGAAACGAGCTGTGAACGTGTAGCAATCATCTTTGTTC
CATTTTCCATTGCGGTAATCCCAGTATTGGCCATGGATAGCTCCGCCTTT
TGTGATTCCTTGATAGatcaaactttgaaaagttGATTGAAGAAACGGTA
CTGGTTTGACTTGATAAACGGTTCCATAGTACGGTGCTTGATCGGTTTTC
AGGGATTGCCGTTTGGGTCCGGACAACTCGCAATAACCATTACTTACGGT
CACGGCCATCTTCACCATCACATCTGATCATATTCGGAAATCCTTGGTAC
TGAAGATGTTCTTGTAGGTTTGTTTTTTGTGAAGTCAACACAAATGCTTT
GCTGCCCTTATAAGACCATGTTTCATACATATAACGGCCGTTCACATTTT
GTTGGGAGGAGACTTTAATGTAGGCTTTAGAGCTAGATTTACCTTTAACC
CATGCGTAGCCAATCCTTTCGTTTAAATCATGAACTTGAAAGGAACCAGG
GGTACAAGTTCCTCTTATGCCATGTGCTCGGAGACCTTTCGAAGTGTCTG
CATAAAAGACATTGATTAAGTAACGACCATTGTTATCATTTCGGTTTAAA
CAGTCCACCACCAGCTTGTTCTGGTAAGCTGCTTGCGTTTTTGTAACAAA
AATCACCAGAATAAATAAAAGATTGCAGAGCATGATCATCTTTGAAAAGA
AGTTTGCAACTGAAATTTGACCGCATCGAAAACTGCTTTTTTATAGGGTT
GAAAGCATAAACATATACACGGAGACAAAATTC Run BLAST on NCBI protein sequence of TCONS_00002213-protein >TCONS_00002213-protein ID=TCONS_00002213-protein|Name=TCONS_00002213-protein|organism=Clytia hemisphaerica|type=polypeptide|length=271bp
MVKMAVTVSNGYCELSGPKRQSLKTDQAPYYGTVYQVKPVPFLQSTFQSL
IYQGITKGGAIHGQYWDYRNGKWNKDDCYTFTARFSDGHSFEVTCPTKDF
SSQQDATTKASALLRTLGQLPKFARSWLKTIAINGGGQGSRAGANSWRKS
MTVNLTPSHINNAFTLFLHEGAHVGMLDIQNSQKWKTAQTLDPLFISSYA
KGSPKHEDVSESFVPWLKVRQDPNSAQSLLIKQTIPNRLAVFDDLVXAME
NGTKMIATRSQLVSQMGIHLK Run BLAST on NCBI transcript from alignment at sc0000018:595593..598375 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00002213 ID=TCONS_00002213|Name=TCONS_00002213|organism=Clytia hemisphaerica|type=transcript|length=2783bp|location=Sequence derived from alignment at sc0000018:595593..598375 (Clytia hemisphaerica)
GAATTTTGTCTCCGTGTATATGTTTATGCTTTCAACCCTATAAAAAAGCA
GTTTTCGATGCGGTCAAATTTCAGTTGCAAACTTCTTTTCAAAGATGATC
ATGCTCTGCAATCTTTTATTTATTCTGGTGATTTTTGTTACAAAAACGCA
AGCAGCTTACCAGAACAAGCTGGTGGTGGACTGTTTAAACCGAAATGATA
ACAATGGTCGTTACTTAATCAATGTCTTTTATGCAGACACTTCGAAAGGT
CTCCGAGCACATGGCATAAGAGGAACTTGTACCCCTGGTTCCTTTCAAGT
TCATGATTTAAACGAAAGGATTGGCTACGCATGGGTTAAAGGTAAATCTA
GCTCTAAAGCCTACATTAAAGTCTCCTCCCAACAAAATGTGAACGGCCGT
TATATGTATGAAACATGGTCTTATAAGGGCAGCAAAGCATTTGTGTTGAC
TTCACAAAAAACAAACCTACAAGAACATCTTCAGTACCAAGGATTTCCGA
ATATGATCAGATGTGATGGTGAAGATGGCCGTGACCGTAAGTAATGGTTA
TTGCGAGTTGTCCGGACCCAAACGGCAATCCCTGAAAACCGATCAAGCAC
CGTACTATGGAACCGTTTATCAAGTCAAACCAGTACCGTTTCTTCAATCa
acttttcaaagtttgatCTATCAAGGAATCACAAAAGGCGGAGCTATCCA
TGGCCAATACTGGGATTACCGCAATGGAAAATGGAACAAAGATGATTGCT
ACACGTTCACAGCTCGTTTCTCAGATGGGCATTCATTTGAAGTGACCTGC
CCTACCAAGGATTTTAGTTCTCAACAAGATGCTACTACCAAAGCATCTGC
TTTGTTGCGAACACTTGGCCAACTTCCTAAATTCGCTCGATCGTGGTTAA
AAACCATCGCTATCAATGGTGGTGGTCAAGGATCAAGAGCGGGCGCTAAC
AGCTGGCGTAAGAGCATGACTGTGAATTTGACGCCCTCGCATATCAATAA
TGCGTTCACTCTCTTTTTACATGAAGGAGCTCATGTTGGTATGTTAGATA
TCCAGAACAGCCAGAAATGGAAGACAGCTCAAACATTGGATCCTTTATTT
ATCTCCTCTTACGCCAAAGGTAGCCCGAAACACGAAGATGTCTCTGAAAG
CTTTGTACCATGGTTGAAAGTGCGACAAGATCCAAATTCAGCTCAAAGCT
TATTAATTAAGCAAACTATACCAAACCGATTGGCAGTCTTTGATGATTTG
GTATGNGCAATGGAAAATGGAACAAAGATGATTGCTACACGTTCACAGCT
CGTTTCTCAGATGGGCATTCATTTGAAGTGACCTGCCCTACCAAGGATTT
TAGTTCTCAACAAGATGCTACTACCAAAGCATCTGATTTGTTGCGAACAC
TTGGCCAACTTCCTAAATTCGCTCGATCGTGGTTAAAAACCATCGCTATC
AATGGTGGTGGTCAAGGATCAAGAGCGGGCGCTAACAGCTGGCGTAAGAG
CATGACTGTGAATTTGACGCCCTCGCATATCAATAATGCGTTCACTCTCT
TTTTACATGAAGGAGCTCATGTTGGTATGTTAGATATCCAGAACAGCCAG
AAATGGAAGACAGCTCAAACATTGGATCCTTTATTTATCTCCTCGTACGC
CAAAGGTAGCCCGAAACACGAAGATGTCTCTGAAAGCTTTGTACCATGGT
TGAAAGTGCGACAAGATCCAAATTCAGCTCAAAGCCTATTAATTAAGCAA
ACTATACCAAACCGATTGGCAGTCTTTGATGATTTGGTATGCTCCAAATA
TCCAGATACTTGCTTGAAAATATAGTTCTTGTCAATTTTTGTCAAAGTCT
GCGCTGATAAAATGGACAGTCcgtttacatgtttttttttataagcatac
agaaatccgaaaacaggctcagagatgcttaggtcgaaagcttaataagg
gctgaaaaatgcttgaggggatgcttaaatctaaagcataaatttaggga
aagactgaaaatctgtaaaattccagccaaaaaaagccaaaatcaggaaa
aaaaacatttttcgtaggctcaagtaatgcttgccatatgcttagttttt
ccccatatctgagcctagatatacttataagtgcaatgcttataaaaaaa
atatgtatagcTCTTTAGGAAGAGACGATATCACTAAAAAAATACCTCAT
TGGAATGATAGTTTCAAGTGGATTGAATATTGATGGTGTAGATGAAAAAT
GCATTATTTTCAGTGATATGTTTTTGCCCTCAAAATCAGTATTTAAAAAA
TACGAACTGTCCATTTTTTCGGAACAGACTTTAGATAAGACAGTGTCAAT
GCACAAATCTGACATAGTTTTATTGGAATGTAAAACTCAAGCTAATTGAT
TCGTTTTGtttttcgtttcaaaatatAAACGAGCCCCTCAGCGGCAACCC
TCATtaactgtaaaacagtccgccagattctTTGGaggtaaaaatagaat
gaaacaaTGTTCTTATTTGAAAATAGGGTATTGCGAGTCTTCTTCACATC
TAGTCTATTATGTTTATTTACTATTCCTAATTATAATTCTCAActccaaa
tatatatttttctttctaaatAGCGAATTACCGTCTCAAATGCTACTAGT
CTACTGCACTGGACGATaaacgtcatcaaaattatCAGGAAGCAAAGCTT
AATCATAAGTAAGACTCTAGTCTAGAATAATGGTTTTTCCGCAAGGATTA
TATTTTTATTCGTTTTCAGTAGTAGAAAGAAAA Coding sequence (CDS) from alignment at sc0000018:595593..598375 >TCONS_00002213 ID=TCONS_00002213|Name=TCONS_00002213|organism=Clytia hemisphaerica|type=CDS|length=816bp|location=Sequence derived from alignment at sc0000018:595593..598375 (Clytia hemisphaerica)
ATGGTGAAGATGGCCGTGACCGTAAGTAATGGTTATTGCGAGTTGTCCGG
ACCCAAACGGCAATCCCTGAAAACCGATCAAGCACCGTACTATGGAACCG
TTTATCAAGTCAAACCAGTACCGTTTCTTCAATCaacttttcaaagtttg
atCTATCAAGGAATCACAAAAGGCGGAGCTATCCATGGCCAATACTGGGA
TTACCGCAATGGAAAATGGAACAAAGATGATTGCTACACGTTCACAGCTC
GTTTCTCAGATGGGCATTCATTTGAAGTGACCTGCCCTACCAAGGATTTT
AGTTCTCAACAAGATGCTACTACCAAAGCATCTGCTTTGTTGCGAACACT
TGGCCAACTTCCTAAATTCGCTCGATCGTGGTTAAAAACCATCGCTATCA
ATGGTGGTGGTCAAGGATCAAGAGCGGGCGCTAACAGCTGGCGTAAGAGC
ATGACTGTGAATTTGACGCCCTCGCATATCAATAATGCGTTCACTCTCTT
TTTACATGAAGGAGCTCATGTTGGTATGTTAGATATCCAGAACAGCCAGA
AATGGAAGACAGCTCAAACATTGGATCCTTTATTTATCTCCTCTTACGCC
AAAGGTAGCCCGAAACACGAAGATGTCTCTGAAAGCTTTGTACCATGGTT
GAAAGTGCGACAAGATCCAAATTCAGCTCAAAGCTTATTAATTAAGCAAA
CTATACCAAACCGATTGGCAGTCTTTGATGATTTGGTATGNGCAATGGAA
AATGGAACAAAGATGATTGCTACACGTTCACAGCTCGTTTCTCAGATGGG
CATTCATTTGAAGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00002213-exon-sc0000018-1491911889:595593..598375 | TCONS_00002213-exon-sc0000018-1491911889:595593..598375 | Clytia hemisphaerica | exon |
| TCONS_00002213-exon-sc0000018-1510915933:595593..598375 | TCONS_00002213-exon-sc0000018-1510915933:595593..598375 | Clytia hemisphaerica | exon |
| TCONS_00002213-exon-sc0000018-1575043694:595593..598375 | TCONS_00002213-exon-sc0000018-1575043694:595593..598375 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000018 | supercontig | sc0000018:595593..598375 . |
Blast
The following BLAST results are available for this feature:
|
