TCONS_00002199 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002199
Unique NameTCONS_00002199
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length358

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002199 ID=TCONS_00002199|Name=TCONS_00002199|organism=Clytia hemisphaerica|type=transcript|length=358bp
AAAATGAGGATGGACACAGTGAAGACCAAGTTGATTTCACCAGATACGTC
ATTGATTCTGCTCCATTGAACAACCAAAGATGTTTTGATACTAACCCCAC
ACAATGTGTAGATAATCCACCTCAATTGGCTATGAATCAAGATGATCCAA
TGGACTTGTCTTCGCCACAAATTGAAGCAAAGTCTTCTTTGACCCAACAG
GAGATTTTCAACATGATTCAATCGCATTTTGATCAATATGAAGCTGAAGA
AGACAATTCGTTTGGAGCTAATCCTTCATTGGAATTGACGAATCCTTCAG
TTCCTTTAGATCATTTTGCAGTGAACAACGCTTTCCATAATCCTCATGTC
AATTATGG
Run BLAST on NCBI

protein sequence of TCONS_00002199-protein

>TCONS_00002199-protein ID=TCONS_00002199-protein|Name=TCONS_00002199-protein|organism=Clytia hemisphaerica|type=polypeptide|length=118bp
NEDGHSEDQVDFTRYVIDSAPLNNQRCFDTNPTQCVDNPPQLAMNQDDPM
DLSSPQIEAKSSLTQQEIFNMIQSHFDQYEAEEDNSFGANPSLELTNPSV
PLDHFAVNNAFHNPHVNY
Run BLAST on NCBI

transcript from alignment at sc0000018:151494..151851

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002199 ID=TCONS_00002199|Name=TCONS_00002199|organism=Clytia hemisphaerica|type=transcript|length=358bp|location=Sequence derived from alignment at sc0000018:151494..151851 (Clytia hemisphaerica)
CCATAATTGACATGAGGATTATGGAAAGCGTTGTTCACTGCAAAATGATC
TAAAGGAACTGAAGGATTCGTCAATTCCAATGAAGGATTAGCTCCAAACG
AATTGTCTTCTTCAGCTTCATATTGATCAAAATGCGATTGAATCATGTTG
AAAATCTCCTGTTGGGTCAAAGAAGACTTTGCTTCAATTTGTGGCGAAGA
CAAGTCCATTGGATCATCTTGATTCATAGCCAATTGAGGTGGATTATCTA
CACATTGTGTGGGGTTAGTATCAAAACATCTTTGGTTGTTCAATGGAGCA
GAATCAATGACGTATCTGGTGAAATCAACTTGGTCTTCACTGTGTCCATC
CTCATTTT

Coding sequence (CDS) from alignment at sc0000018:151494..151851

>TCONS_00002199 ID=TCONS_00002199|Name=TCONS_00002199|organism=Clytia hemisphaerica|type=CDS|length=354bp|location=Sequence derived from alignment at sc0000018:151494..151851 (Clytia hemisphaerica)
ATAATTGACATGAGGATTATGGAAAGCGTTGTTCACTGCAAAATGATCTA
AAGGAACTGAAGGATTCGTCAATTCCAATGAAGGATTAGCTCCAAACGAA
TTGTCTTCTTCAGCTTCATATTGATCAAAATGCGATTGAATCATGTTGAA
AATCTCCTGTTGGGTCAAAGAAGACTTTGCTTCAATTTGTGGCGAAGACA
AGTCCATTGGATCATCTTGATTCATAGCCAATTGAGGTGGATTATCTACA
CATTGTGTGGGGTTAGTATCAAAACATCTTTGGTTGTTCAATGGAGCAGA
ATCAATGACGTATCTGGTGAAATCAACTTGGTCTTCACTGTGTCCATCCT
CATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001149XLOC_001149Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002199-proteinTCONS_00002199-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002199-exon-sc0000018-1491911889:151494..151851TCONS_00002199-exon-sc0000018-1491911889:151494..151851Clytia hemisphaericaexon
TCONS_00002199-exon-sc0000018-1510915933:151494..151851TCONS_00002199-exon-sc0000018-1510915933:151494..151851Clytia hemisphaericaexon
TCONS_00002199-exon-sc0000018-1575043694:151494..151851TCONS_00002199-exon-sc0000018-1575043694:151494..151851Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000018supercontigsc0000018:151494..151851 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0.200647	0	0	0	0.158357	0	0	0	0	0	0	0	0.230214	0	0	0	0	0.456311	0	0	0.264279	0.269258
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00002199 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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