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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00002195 ID=TCONS_00002195|Name=TCONS_00002195|organism=Clytia hemisphaerica|type=transcript|length=1904bp
tagtgagaaaaaaaaacaaaaacaaatgaacaataatttgaaaaagatgA
CAAAAGAGAATAAAAACACGCAAACAAAAAGTTTCATTTGCTTCACATGT
CGACAAACGGGCCATAAGAAAGCCGAATGTCATTTGAAACCCAATAATAC
TTGGTCAGCGGTTTCTGAGCCAACACCTAAAGCACAGAACAATGGTAATA
TTAGAAGTAAAGCACCAGATTTTGCATTTAAGGTTGAAAATGAGCTGGAA
ATTGATATTGGAAATCGATGTTATGATGGGTATTTGAGAGATGACTTGTC
TTTAGTCGATTTGTTGAAAAACGGTCATGATGAATTCAGTCAAAATAACG
TTGTTAGAATCGACGACTCTGGTGAAATTCCAATGTCAGATCGAGGCTAC
GATGGTTTAATCTTTGATGATCCATCTCTGGACAAGGATTTATTGACGTA
CAATAACAATTTTTATGGTCATGAGAAATACTATAAAAGGAATGCTATTG
GAATCATTAACTCTGGGGAAATCCCAGTGTCGTCAGAACGAAGTTATGAT
GGTTCTATCCAAGATGATCTATCCCTGGTAAAAGGTTTGGTaacgaataa
taataataataataatgactTTCAACGAAGTTATGATGGTTTAATCCAAG
ATGACCCATCTTTGGCAAACGAAATCTTAAGCAGTAACAACAAATATGAA
CCTATTCAAAACATATTCGATGATCATGGTGGTATTAAAGTTGAAGAAGA
TTCAAGAGAGGAGTTACAAGGTGAAGTTAATGTAAAGAAGGAACAAAACT
TAGGTCAAACACTGATGCAGTCATGGTATTGAAAGAATGGTAGTGATTTT
TGTCGTGTTGTGTCGGTTATtacaaattaacattttcaagacCGATGAca
cggatatatccgacatgggGTGTTAAGGGGGCGAGGCCCTTCTGTAAAGC
CCGTTTCGAAGTTGAGACTTTTTGGTCATATTAGACAAAGAGTATTTTGG
TTCGTATTTAGTGAACGAGTGAGTCAAAAGCCGCAAAATTTGGATCGTTT
TTTTAGATTCTCTCATCTAGTGAATTAATTTGAAGTCCCTTCTAGTTCTA
GAGATATAACGGTTTAAAATTGGACCTTAGGAATAAAAGAAAGGCCTGGT
CGTTACTGGCAAACTACTACTATAAAAACCCCCAAAATTAAATGGAGTTC
ATTTTGACAGAACTTTAAGTATTTTATAGATTTTATACCTTTTTTCCCTT
AGAACTTTGTCATTATTACtgcatagtgcggaaaggggtctggccccccc
ttcttaaatgatcccccccTTCTTGAcatccccccaacctttaaaaatgc
ctatcccccaaagGTTTcgggctaaattttttatggtaaaaagggaagga
aaacagtaaagaaaaattaagccTGGCCAAAATAATACCACTTTTTAcct
agtgaaaataaagaacttcctttcatacagaccaaatttcataacagtgc
tggaaaataatctacaatatatgtaagccccccttcttaaacgatccccc
ctccttgctatcccccctttttAGGTTTCatcccccccttaagaaaggga
gGGGTCCGAACTATGATTAGAGACATTATTTGCTaaaattaaacaatttt
tattatttttttcttaaagtgCTCATAGGGCACCATAAATACTTATCAAA
AGATTCTTTGAGAGTTTTAGTTTTTATCTTCATGTTCATCTAGTAATTTA
TTTCTCGATACCGTTATGTTCATATTTATACGCGAATTTTATTGTTAATC
Taccctttttggacctaccccggtggaggtcctataaattaacctttgtc
cgttcgtccgttcgtccgttcgttcgttagttattagctttcctcatgat
tgNN Run BLAST on NCBI protein sequence of TCONS_00002195-protein >TCONS_00002195-protein ID=TCONS_00002195-protein|Name=TCONS_00002195-protein|organism=Clytia hemisphaerica|type=polypeptide|length=276bp
SEKKKQKQMNNNLKKMTKENKNTQTKSFICFTCRQTGHKKAECHLKPNNT
WSAVSEPTPKAQNNGNIRSKAPDFAFKVENELEIDIGNRCYDGYLRDDLS
LVDLLKNGHDEFSQNNVVRIDDSGEIPMSDRGYDGLIFDDPSLDKDLLTY
NNNFYGHEKYYKRNAIGIINSGEIPVSSERSYDGSIQDDLSLVKGLVTNN
NNNNNDFQRSYDGLIQDDPSLANEILSSNNKYEPIQNIFDDHGGIKVEED
SREELQGEVNVKKEQNLGQTLMQSWY Run BLAST on NCBI transcript from alignment at sc0000018:8081..9984 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00002195 ID=TCONS_00002195|Name=TCONS_00002195|organism=Clytia hemisphaerica|type=transcript|length=1904bp|location=Sequence derived from alignment at sc0000018:8081..9984 (Clytia hemisphaerica)
NNcaatcatgaggaaagctaataactaacgaacgaacggacgaacggacg
aacggacaaaggttaatttataggacctccaccggggtaggtccaaaaag
ggtAGATTAACAATAAAATTCGCGTATAAATATGAACATAACGGTATCGA
GAAATAAATTACTAGATGAACATGAAGATAAAAACTAAAACTCTCAAAGA
ATCTTTTGATAAGTATTTATGGTGCCCTATGAGcactttaagaaaaaaat
aataaaaattgtttaattttAGCAAATAATGTCTCTAATCATAGTTCGGA
CCCctccctttcttaagggggggatGAAACCTaaaaaggggggatagcaa
ggaggggggatcgtttaagaaggggggcttacatatattgtagattattt
tccagcactgttatgaaatttggtctgtatgaaaggaagttctttatttt
cactaggTAAAAAGTGGTATTATTTTGGCCAggcttaatttttctttact
gttttccttccctttttaccataaaaaatttagcccgAAACctttggggg
ataggcatttttaaaggttggggggatgTCAAGAAgggggggatcattta
agaagggggggccagacccctttccgcactatgcaGTAATAATGACAAAG
TTCTAAGGGAAAAAAGGTATAAAATCTATAAAATACTTAAAGTTCTGTCA
AAATGAACTCCATTTAATTTTGGGGGTTTTTATAGTAGTAGTTTGCCAGT
AACGACCAGGCCTTTCTTTTATTCCTAAGGTCCAATTTTAAACCGTTATA
TCTCTAGAACTAGAAGGGACTTCAAATTAATTCACTAGATGAGAGAATCT
AAAAAAACGATCCAAATTTTGCGGCTTTTGACTCACTCGTTCACTAAATA
CGAACCAAAATACTCTTTGTCTAATATGACCAAAAAGTCTCAACTTCGAA
ACGGGCTTTACAGAAGGGCCTCGCCCCCTTAACACcccatgtcggatata
tccgtgTCATCGgtcttgaaaatgttaatttgtaATAACCGACACAACAC
GACAAAAATCACTACCATTCTTTCAATACCATGACTGCATCAGTGTTTGA
CCTAAGTTTTGTTCCTTCTTTACATTAACTTCACCTTGTAACTCCTCTCT
TGAATCTTCTTCAACTTTAATACCACCATGATCATCGAATATGTTTTGAA
TAGGTTCATATTTGTTGTTACTGCTTAAGATTTCGTTTGCCAAAGATGGG
TCATCTTGGATTAAACCATCATAACTTCGTTGAAagtcattattattatt
attattattcgttACCAAACCTTTTACCAGGGATAGATCATCTTGGATAG
AACCATCATAACTTCGTTCTGACGACACTGGGATTTCCCCAGAGTTAATG
ATTCCAATAGCATTCCTTTTATAGTATTTCTCATGACCATAAAAATTGTT
ATTGTACGTCAATAAATCCTTGTCCAGAGATGGATCATCAAAGATTAAAC
CATCGTAGCCTCGATCTGACATTGGAATTTCACCAGAGTCGTCGATTCTA
ACAACGTTATTTTGACTGAATTCATCATGACCGTTTTTCAACAAATCGAC
TAAAGACAAGTCATCTCTCAAATACCCATCATAACATCGATTTCCAATAT
CAATTTCCAGCTCATTTTCAACCTTAAATGCAAAATCTGGTGCTTTACTT
CTAATATTACCATTGTTCTGTGCTTTAGGTGTTGGCTCAGAAACCGCTGA
CCAAGTATTATTGGGTTTCAAATGACATTCGGCTTTCTTATGGCCCGTTT
GTCGACATGTGAAGCAAATGAAACTTTTTGTTTGCGTGTTTTTATTCTCT
TTTGTcatctttttcaaattattgttcatttgtttttgtttttttttctc
acta Coding sequence (CDS) from alignment at sc0000018:8081..9984 >TCONS_00002195 ID=TCONS_00002195|Name=TCONS_00002195|organism=Clytia hemisphaerica|type=CDS|length=831bp|location=Sequence derived from alignment at sc0000018:8081..9984 (Clytia hemisphaerica)
TCAATACCATGACTGCATCAGTGTTTGACCTAAGTTTTGTTCCTTCTTTA
CATTAACTTCACCTTGTAACTCCTCTCTTGAATCTTCTTCAACTTTAATA
CCACCATGATCATCGAATATGTTTTGAATAGGTTCATATTTGTTGTTACT
GCTTAAGATTTCGTTTGCCAAAGATGGGTCATCTTGGATTAAACCATCAT
AACTTCGTTGAAagtcattattattattattattattcgttACCAAACCT
TTTACCAGGGATAGATCATCTTGGATAGAACCATCATAACTTCGTTCTGA
CGACACTGGGATTTCCCCAGAGTTAATGATTCCAATAGCATTCCTTTTAT
AGTATTTCTCATGACCATAAAAATTGTTATTGTACGTCAATAAATCCTTG
TCCAGAGATGGATCATCAAAGATTAAACCATCGTAGCCTCGATCTGACAT
TGGAATTTCACCAGAGTCGTCGATTCTAACAACGTTATTTTGACTGAATT
CATCATGACCGTTTTTCAACAAATCGACTAAAGACAAGTCATCTCTCAAA
TACCCATCATAACATCGATTTCCAATATCAATTTCCAGCTCATTTTCAAC
CTTAAATGCAAAATCTGGTGCTTTACTTCTAATATTACCATTGTTCTGTG
CTTTAGGTGTTGGCTCAGAAACCGCTGACCAAGTATTATTGGGTTTCAAA
TGACATTCGGCTTTCTTATGGCCCGTTTGTCGACATGTGAAGCAAATGAA
ACTTTTTGTTTGCGTGTTTTTATTCTCTTTTGTcatctttttcaaattat
tgttcatttgtttttgtttttttttctcact
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00002195-exon-sc0000018-1491911889:8081..9984 | TCONS_00002195-exon-sc0000018-1491911889:8081..9984 | Clytia hemisphaerica | exon |
| TCONS_00002195-exon-sc0000018-1510915933:8081..9984 | TCONS_00002195-exon-sc0000018-1510915933:8081..9984 | Clytia hemisphaerica | exon |
| TCONS_00002195-exon-sc0000018-1575043694:8081..9984 | TCONS_00002195-exon-sc0000018-1575043694:8081..9984 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000018 | supercontig | sc0000018:8081..9984 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR001878 | Znf_CCHC |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008270 | zinc ion binding |
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
| molecular_function |
GO:0008270 |
zinc ion binding |
Blast
The following BLAST results are available for this feature:
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