TCONS_00002194 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002194
Unique NameTCONS_00002194
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length572

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002194 ID=TCONS_00002194|Name=TCONS_00002194|organism=Clytia hemisphaerica|type=transcript|length=572bp
cacttgtttacttCACAATACCAAAGTGAAAGTCGATTTTCGAAAGTTTG
ATTCTCGCGAAAGTTGATTCTCGAAAGTTTGATTCTCGCGAAAGTTGATT
CTCGAAAGTTTGATTCTTGCGAAAGTTGATTTTCGAAAGTTGAttatcgc
gaaagtttctaacctgtctcaatataatttgcaacGGAGACAAAAAGCTG
CAACTTTTGATTGAATTCGAACTGAATGTTATTCGCTTTAATTGTGCACT
TTTTTTTCAACCTAATAAGAACAGGGGGtcccaaaaatttgagaaattat
tAAACTAATTACACCGACAGGGTTATTACATATCAAAGGAAGAGATTGCA
CACTTAAAGTGAATGGGTGTTGTTTGCGTTGGAAAGGTAATCAGTTAgta
gaatattatcaaaaaaataaatttttagtttatatattgttttatttcta
tatttttgttaatgtaaaatatttctcagattattttttgtatttttcgg
AATATAAGCCTTTCAAAAACGACACTTTTAAAACACGATTTCTGCGGGAG
GAGCTAAAACGGGAGAGGTTGG
Run BLAST on NCBI

transcript from alignment at sc0000018:6058..6629

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002194 ID=TCONS_00002194|Name=TCONS_00002194|organism=Clytia hemisphaerica|type=transcript|length=572bp|location=Sequence derived from alignment at sc0000018:6058..6629 (Clytia hemisphaerica)
CCAACCTCTCCCGTTTTAGCTCCTCCCGCAGAAATCGTGTTTTAAAAGTG
TCGTTTTTGAAAGGCTTATATTccgaaaaatacaaaaaataatctgagaa
atattttacattaacaaaaatatagaaataaaacaatatataaactaaaa
atttatttttttgataatattctacTAACTGATTACCTTTCCAACGCAAA
CAACACCCATTCACTTTAAGTGTGCAATCTCTTCCTTTGATATGTAATAA
CCCTGTCGGTGTAATTAGTTTaataatttctcaaatttttgggaCCCCCT
GTTCTTATTAGGTTGAAAAAAAAGTGCACAATTAAAGCGAATAACATTCA
GTTCGAATTCAATCAAAAGTTGCAGCTTTTTGTCTCCgttgcaaattata
ttgagacaggttagaaactttcgcgataaTCAACTTTCGAAAATCAACTT
TCGCAAGAATCAAACTTTCGAGAATCAACTTTCGCGAGAATCAAACTTTC
GAGAATCAACTTTCGCGAGAATCAAACTTTCGAAAATCGACTTTCACTTT
GGTATTGTGaagtaaacaagtg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001144XLOC_001144Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002194-exon-sc0000018-1491911889:6058..6629TCONS_00002194-exon-sc0000018-1491911889:6058..6629Clytia hemisphaericaexon
TCONS_00002194-exon-sc0000018-1510915933:6058..6629TCONS_00002194-exon-sc0000018-1510915933:6058..6629Clytia hemisphaericaexon
TCONS_00002194-exon-sc0000018-1575043694:6058..6629TCONS_00002194-exon-sc0000018-1575043694:6058..6629Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000018supercontigsc0000018:6058..6629 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0977348	0.667148	0.442642	0.216528	0	0	0.376961	0.235271	0.329437	0.102015	0.0990185	0.195273	0.195001	0.0675035	0.166491	0.297784	0.146738	0.075201	0.103894	0	0.0944956	0.138275	0.448243	0.203759	0.734535	1.12381	0.134014	0.143023	0.108478	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00002194 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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