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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00002193 ID=TCONS_00002193|Name=TCONS_00002193|organism=Clytia hemisphaerica|type=transcript|length=1083bp
GTCCTCGTCAACCTTCATTGTCCCAGTTGTCGACAGATATTCGCCAATCG
CTTACAGTATTGTTAACTTCATTCACTGGCACCACCAGGTGGCTAAACAC
AAAGGAGTGGAAACAGTGTATCGCTACGTTCTACAGATCGCATATATCAT
CGATGGACGAGATCTAATTCGTACTATCAGAAGGAATTGTCAAAGATGCC
GCTACCTGGCCAAGAAAGCAATCAACGTTGAAATGGGTCCAGTATCCCAG
CACAGTCTCAATATTGCACCACCATTTTATTCAACTCAAGTGGATCTATG
TGGTCCATTCAGTGCATATTCAAGTTTCAATAAGCGAAAGAGTATAAAGA
TTTGGTTGGTGGTTTTTTGTTGTACAACAACATCAGCAACAAAAATACAT
GTTATGGATGACTACAGTACACCATCATTCATCCTAATGGTTATCAGATT
TTCAAGCAACGTTGGCTATCCCAAGTATTTGTTGCCAGATGAAGGCAGTC
AATTTAGTCAAAGGATGTGATTCTCTCCGACTCAACTTTAAGGATCTTCA
AAACCAACTTCATCGCGACACAATGATCGAATTTGAAGTATGTCCAGTTT
CAGGTCATTTCATGCACGGAAAGGTAGAAAGGAAGattcaagaaataaag
aaatcaaTCGAGATGAATCTCCACAACCATAAGCTTTCCTTAATGCAATG
GGAAACTGTTGCAGCACAAGTTGGAAATACAATCAATGACATGCCACTTG
CTCTTGCTGGACAGACTGATTACGAGATATCTGATGTCTTAACACCAAAT
CGTCTGCTACTGGGCAGAAATAACGAGAGAAGTCCAACCTTTCCTGTTGA
TGTTAGCACAAAACCTGATAAATTCATCAGGTTGAATCAAGAGATATTTC
AAGCGTGGTTCGAAACATGGCTCGTTGTCCATGTGCCACGGCTAATGCAT
CGACCAAAATGGTTCAAGAACGAATATGACATTAAAACCGGAGACATCGT
CCTATTTGCAAAGCGTGAGAATGCACTCTCAAGCACATACCAATATGGAA
TGGTGAAAAGTGTCGAGAAAAGTACAGATGGAA Run BLAST on NCBI protein sequence of TCONS_00002193-protein >TCONS_00002193-protein ID=TCONS_00002193-protein|Name=TCONS_00002193-protein|organism=Clytia hemisphaerica|type=polypeptide|length=198bp
MKAVNLVKGCDSLRLNFKDLQNQLHRDTMIEFEVCPVSGHFMHGKVERKI
QEIKKSIEMNLHNHKLSLMQWETVAAQVGNTINDMPLALAGQTDYEISDV
LTPNRLLLGRNNERSPTFPVDVSTKPDKFIRLNQEIFQAWFETWLVVHVP
RLMHRPKWFKNEYDIKTGDIVLFAKRENALSSTYQYGMVKSVEKSTDG Run BLAST on NCBI transcript from alignment at sc0000018:1097093..1098322- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00002193 ID=TCONS_00002193|Name=TCONS_00002193|organism=Clytia hemisphaerica|type=transcript|length=1230bp|location=Sequence derived from alignment at sc0000018:1097093..1098322- (Clytia hemisphaerica)
GTCCTCGTCAACCTTCATTGTCCCAGTTGTCGACAGATATTCGCCAATCG
CTTACAGTATTGTTAACTTCATTCACTGGCACCACCAGGTGGCTAAACAT
AAAGGAGTGGAAACAGTGTATCGCTACGTTCTACAGATCGCATATATCAT
CGATGGACGAGATCTAATTCGTACTATCAGAAGGAATTGTCAAAGATGCC
GCTACCTGGCCAAGAAAGCAATCNGGCACCACCCGGTGGCTAAACACAAA
GGAGTGGAAACAGTGTATCGCTACGTTCTACAGATCGCATATATCATCGA
TGGACGAGATCTAATTCGTACTATCAGAAGGAATTGTCAAAGATGCCGCT
ACCTGGCCAAGAAAGCAATCAACGTTGAAATGGGTCCAGTATCCCAGCAC
AGTCTCAATATTGCACCACCATTTTATTCAACTCAAGTGGATCTATGTGG
TCCATTCAGTGCATATTCAAGTTTCAATAAGCGAAAGAGTATAAAGATTT
GGTTGGTGGTTTTTTGTTGTACAACAACATCAGCAACAAAAATACATGTT
ATGGATGACTACAGTACACCATCATTCATCCTAATGGTTATCAGATTTTC
AAGCAACGTTGGCTATCCCAAGTATTTGTTGCCAGATGAAGGCAGTCAAT
TTAGTCAAAGGATGTGATTCTCTCCGACTCAACTTTAAGGATCTTCAAAA
CCAACTTCATCGCGACACAATGATCGAATTTGAAGTATGTCCAGTTTCAG
GTCATTTCATGCACGGAAAGGTAGAAAGGAAGATTCAAGAAATAAAGAAA
TCAATCGAGATGAATCTCCACAACCATAAGCTTTCCTTAATGCAATGGGA
AACTGTTGCAGCACAAGTTGGAAATACAATCAATGACATGCCACTTGCTC
TTGCTGGACAGACTGATTACGAGATATCTGATGTCTTAACACCAAATCGT
CTGCTACTGGGCAGAAATAACGAGAGAAGTCCAACCTTTCCTGTTGATGT
TAGCACAAAACCTGATAAATTCATCAGGTTGAATCAAGAGATATTTCAAG
CGTGGTTCGAAACATGGCTCGTTGTCCATGTGCCACGGCTAATGCATCGA
CCAAAATGGTTCAAGAACGAATATGACATTAAAACCGGAGACATCGTCCT
ATTTGCAAAGCGTGAGAATGCACTCTCAAGCACATACCAATATGGAATGG
TGAAAAGTGTCGAGAAAAGTACAGATGGAA Coding sequence (CDS) from alignment at sc0000018:1097093..1098322- >TCONS_00002193 ID=TCONS_00002193|Name=TCONS_00002193|organism=Clytia hemisphaerica|type=CDS|length=594bp|location=Sequence derived from alignment at sc0000018:1097093..1098322- (Clytia hemisphaerica)
ATGAAGGCAGTCAATTTAGTCAAAGGATGTGATTCTCTCCGACTCAACTT
TAAGGATCTTCAAAACCAACTTCATCGCGACACAATGATCGAATTTGAAG
TATGTCCAGTTTCAGGTCATTTCATGCACGGAAAGGTAGAAAGGAAGATT
CAAGAAATAAAGAAATCAATCGAGATGAATCTCCACAACCATAAGCTTTC
CTTAATGCAATGGGAAACTGTTGCAGCACAAGTTGGAAATACAATCAATG
ACATGCCACTTGCTCTTGCTGGACAGACTGATTACGAGATATCTGATGTC
TTAACACCAAATCGTCTGCTACTGGGCAGAAATAACGAGAGAAGTCCAAC
CTTTCCTGTTGATGTTAGCACAAAACCTGATAAATTCATCAGGTTGAATC
AAGAGATATTTCAAGCGTGGTTCGAAACATGGCTCGTTGTCCATGTGCCA
CGGCTAATGCATCGACCAAAATGGTTCAAGAACGAATATGACATTAAAAC
CGGAGACATCGTCCTATTTGCAAAGCGTGAGAATGCACTCTCAAGCACAT
ACCAATATGGAATGGTGAAAAGTGTCGAGAAAAGTACAGATGGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00002193-exon-sc0000018-1575043694:1098225..1098322 | TCONS_00002193-exon-sc0000018-1575043694:1098225..1098322 | Clytia hemisphaerica | exon |
| TCONS_00002193-exon-sc0000018-1575043694:1097093..1098077 | TCONS_00002193-exon-sc0000018-1575043694:1097093..1098077 | Clytia hemisphaerica | exon |
| TCONS_00002193-exon-sc0000018-1510915933:1098225..1098322 | TCONS_00002193-exon-sc0000018-1510915933:1098225..1098322 | Clytia hemisphaerica | exon |
| TCONS_00002193-exon-sc0000018-1510915933:1097093..1098077 | TCONS_00002193-exon-sc0000018-1510915933:1097093..1098077 | Clytia hemisphaerica | exon |
| TCONS_00002193-exon-sc0000018-1491911889:1098225..1098322 | TCONS_00002193-exon-sc0000018-1491911889:1098225..1098322 | Clytia hemisphaerica | exon |
| TCONS_00002193-exon-sc0000018-1491911889:1097093..1098077 | TCONS_00002193-exon-sc0000018-1491911889:1097093..1098077 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000018 | supercontig | sc0000018:1097093..1098322 - |
Blast
The following BLAST results are available for this feature:
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