TCONS_00002190 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002190
Unique NameTCONS_00002190
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length961

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002190 ID=TCONS_00002190|Name=TCONS_00002190|organism=Clytia hemisphaerica|type=transcript|length=961bp
ATCCGTGGTCGAGTTAACCTGGTTTTATGCTCGCCATTACGACTTTTCAC
AAGCAATCATTTCTGGcagtaaaaaattaaaagtgataAACGAAGAAGat
ttttgtttgttattgttgaCATAACTCGTTGTTTCATCattgatttaaaa
gtttttattgtATGGGAAGGTTTCATTCGATAAAACGTCGGCCATTTTAT
TCTCTTTAgagataaattttgaaaaagatatgacatgaaaatcttgtgtt
tttgATCACGATCAGagtttttgagtaattttctaACACATTCCCCATTC
TGATGGTACTAATGGATAAAGAGACCACTGACATTAAAGTCAATCTGATA
ACAAAGGAGCCAGATGTATCATTCAAGAAGCCACCTTTACAAAGGAGTCT
TTCTAATGGAACTCGGTACCCCTTGTTAACACAGGGTGAATGCCAAGTAT
GTCGAATCGCTCACCATAAGAACTTAAttcaaaagataattttttccaAA
CCGTTGCGTAAATGGGAGACCCACCAATTAAATCTCTCAGAGAGCAACAT
CTCAGCCTCAAGTcCTCGTGGATATATGACATACGGCATTGCCTACACTG
AGATATCCGAAGTCCTGAGGAACGTACAAAATGGCACCAAGCCTCCATAC
ACCATACATTTCGTGCTACCCAGATTTGGTTCCTTATTGCTGCAGTTCAA
CTCAGCTTACGAAAGAGACCAATGGTATTTCTCCATCTATTGGAAGATAA
CGGCCTCACGGATACGAAAGCTTCATACCAAAATTAAACGCTCCGATGAA
CTCATTAACGAGCTGAAGGAACTGATAAATACATGTCTCGCCATGCCAAT
TTCCGACAGCAATGTTTTTCAATTACCACTCAACGCTGTGTCAAGTCTAC
TGCTTTTGCATGGACATGAGATCGGTGAATCTTTGAGAGTTGAAATTCTG
AAGGTGACCGC
Run BLAST on NCBI

protein sequence of TCONS_00002190-protein

>TCONS_00002190-protein ID=TCONS_00002190-protein|Name=TCONS_00002190-protein|organism=Clytia hemisphaerica|type=polypeptide|length=219bp
MVLMDKETTDIKVNLITKEPDVSFKKPPLQRSLSNGTRYPLLTQGECQVC
RIAHHKNLIQKIIFSKPLRKWETHQLNLSESNISASSPRGYMTYGIAYTE
ISEVLRNVQNGTKPPYTIHFVLPRFGSLLLQFNSAYERDQWYFSIYWKIT
ASRIRKLHTKIKRSDELINELKELINTCLAMPISDSNVFQLPLNAVSSLL
LLHGHEIGESLRVEILKVT
Run BLAST on NCBI

transcript from alignment at sc0000018:1046266..1059252-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002190 ID=TCONS_00002190|Name=TCONS_00002190|organism=Clytia hemisphaerica|type=transcript|length=12987bp|location=Sequence derived from alignment at sc0000018:1046266..1059252- (Clytia hemisphaerica)
ATCCGTGGTCGAGTTAACCTGGTTTTATGCTCGCCATTACGACTTTTCAC
AAGCAATCATTTCTGGCAGTAAAAAATTAAAAGTGATAAACGAAGAAGAT
TTTTGTTTGTTATTGTTGACATAACTCGTTGTTTCATCATTGATTTAAAA
GTTTTTATTGTATGGGAAGGTTTCATTCGATAAAACGTCGGCCATTTTAT
TCTCTTTAGAGATAAATTTTGAAAAAGATATGACATGAAAATCTTGTGTT
TTTGATCACGATCAGAGTTTTTGAGTAATTTTCTAACACATTCCCCATTC
TGATGGTACTAATGGATAAAGAGACCACTGACATTAAAGTCAATCTGATA
ACAAAGGAGCCAGATGTATCATTCAAGAAGCCACCTTTACAAAGGAGTCT
TTCTAATGGAACTCGGTACCCCTTGTTAACACAGGGTGAATGCCAAGTAT
GTCGAATCGCTCACCATAAGAACTTAATTCAAAAGATAATTTTTTCCAAA
CCGTTGCGTAAATGGGAGACCCACCAATTAAATCTCTCAGAGAGCAACAT
CTCAGCCTCAAGTGTAAGTATATCTTTACTTTGTTCTCACTATCTATTTA
TACAATATAAGAAAAGGAAAAAGAACAAGTAACTCTCATGCTATAGGAAA
TATTACAAAACTTGTGGTAAACTTGTATAGGTGATTTATATTGATTGCGG
TTGTTTTTAACCAACAACGTGTAAATTTATCACAAATTTATTAGTTTTCA
CTAATGTTTACAAATTTTTCTTATCTCAGGAAGAGCAGGAATTATAAAAA
AAGGATTTTGGTATTAAACCAGACGTCCGCGCTCGTTAGGATTATTTATA
GATCTATCATTGATCTTTTATCGATCTTATCGACCCTATCGACTCATACT
CGATTTACGATCGATAACAAATCGATTAAAGATTGATGACGGATCGATTA
ACGATCGATGACGAATCGGTATACTCGATTGAAATACTAGCTCGATAATG
GATCAACGAAGGATCAATACTCAAGACTTTTTAATGGCTGAATCTTCCAT
CAATCTCCTATCCGGATCGTTAAGTAATCCATCGATCACATATCGATCCG
TCATCGAGCCGTTCCGATGATAGATCCTATCGAGCGCGGACGTCTGGATT
AAAATACCGTCAACTGCTCTAACTTGGGATGGTTGGTCGAAACATGGGAC
CGTATGATATCTGGACTGTATTTTCAGTTTTTACTTACTATATATACTGT
TAATCTCTTTGACAACAAATTTGTTTTGATAACTCCACCAACTTTATCAA
TCATACTTTCTGTCATAACTCACTGTAAGTTTAACTGGTAGCGCGCCCTT
TTTAACTTTTTTGTTTTCATTCAAAATGACCGGACGCCAATTGGAGAATT
AGAGAACGCCCGTCGCCTAACCGCCTATTGCCCAATGGGATTAACAAATA
ACAAAAAACACTCCATCGTTTTGCTACTACTTTGTTCTTCTTCGTTCCAG
ACACTCCCGTGTGTTCCACTACGGATTTTTTCATATTTCGATTTAAAAGC
CTATGCTACTTGGTGCAAAAGAGTTTTCAAAAGTTTTTTATACGCGGTTC
CTTTACTCAAATCAAATGACTTTGGAGGTTTGGTGAAATGGTGGTGGAAT
GGCCGTCCCATGTTTTGTCAGATAGACCCAAGTTAGAGCAGTTGATGGTA
TATAGAGATTCATTTCAAACAGTTGAACGGGTCAGAAAATCTGGCTTTGA
CTTTAATGTTCCTTGGTCCGAGCTACAGTATTAAACATTTTCATTTCACT
GTAAAATAGATGTTCGGCAATAGTTGTTTGTTTAGGGAAAGGAGAGACAG
TCTACCAGTGTAACTCTAACCCTCCATACAAAATTTAAGGGAAATGTATA
TTTGGAATTTGTACGTCCAATGTTGCACGCAAGCACAAGCTAAAGTCCCG
CAGAAGCAGGACAAAAATCAGTTTTTCAAAATCTACAAAATGCCACATTA
AGTCAAAAGTTCTAGAAATGAAAATAAAGGGATATAATGTTAATTTAGCA
CTATCAATTGATGATCTGCGGTACTATCTTTATCTACTGTTTTCTTGAGA
AAATAATTGACAGATAAAAATTTTTCACTTGTGCAAGAGCTCTCAGACGT
TCTAGAGCGTTGGCTTTTTTTAACTCAGCTCAATTCTCAAACCACGCTAA
AATAGTAGAACTTAGCTGTGGCAGATCATTCCAAGGAAGGTGTGTGAATG
TTTACGAGGTTCTTGACAGACAATGTTTTGTTTGATTGTCAAATGATGAC
AGTGCTGTTATTAATTTTGTTAAATCTGACAGATTGATGTTTGCAAGTGC
ACTTTATAGTTTTAATTCCCATTGATCATATTCTGGTTTTATGTTACTAT
ATGCTGTTTTAGAGCTTTAGAGCTAGCCTGTCTATTGAATAAAAATTACT
ACAATATAATTTTCACTCAGCTAGTACAAATGTAATAAATTATCTGTGTC
CCTAGGTAACACAGGGCTCCCACAGCTCCTCAAATCTCCTCAATTCTCCT
CAAATCTCCTACTTGTTCTCAAATTTCTCNAGGGCTCCCACAGCTCCTCA
AATCTCCTCAATTCTACTCAAATCTCCTACTTGTTCTCGAATTTTTTTCA
ATATTTTCTTCAAATCTCCTCAATTAAATTTGACCAAAAATAAAAAACAT
TCAACTTAGTATCGCTGGCCCTCTAGATGTTTCGAAAATTGATTTTCAAG
AATAAAATGCAAAATTTTTTGCTCACTTCGCTCGCACATTTCTTTACTCT
AATATCTTGTGTCCATTTCCTCATTGCTTTTCAAGAACTCCCAATCAGTG
GCGTTCTGGTAAAGACAGGGGGCCACCACCCCCCAACAGAGTTTTTTTTA
TCTAATATTTTTATTGAACAGTACAGTGTTGCTCTTTTAACCTGTTTTAA
CAACAAAATGTATCATTTTAACTTGAAAAGAAAATCTCCTCAATTTTTCT
AAAAATATATGAAAAAAATCTCCTCGAAAAAAAGTGAAAAATCCTCCTTA
ATTCTCCTCAATTCTCCTTAAATTTGAAATTTTGAAAGCTATGGGAACCC
TGTAACAGCTGTGTTGTAAAAGACAATAATTAGTTATTTACCTGCAATGG
ATTCTTCAACACAATCCAGTGATTTCATTTTTCAACCAACAAGAGTAGAT
CTCCTTTTCCATTATGACCCTAGCTAAGCACCAGACTTACAGAAGCACCA
AACTTACAGAAGCACCGGACAGAAAATGTCCAGTGTAAAATGTGACAACT
TTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTTATTGTTATGAT
TTGATAAACAAAAGTATGACGTCAAACAGCTCTATTGTTTCAAGAAGTGG
CGCGAGCTTTTGAATTGTTTTGAAAAAATAACGTTTTTTTCGCTACCCTG
GTTTTAGTCTGGGAAAGCTTTGGAAACATAAATTTGTACTACTGTAGAAC
CAAGCTGTAATTTTAGAACACAAATACCTCACTTTGGGAAAAAGCCCAAC
TAGACCTTTTTACTAAAGACAAGTCATCTCTTTCATTATGTACAATTAGC
TTAAATCTCGCAGCCTGGGAATATAGTAGGCAAACCTTTGAATCTAGGCT
TTGATATTTTATGGTTTTTGTTTTTTAAATTTTGGAATGTAAGACTGTAT
TTTGTAAATTTAATTTGCTGCATTTTCGTTGTAGTATTATATTTCAGGTC
CTGAAATTGAGGTTGAACAATGGACACATTATTTGAAAGGAATACTTCCA
CCAAAAACTTTCAGGGTTACCTGATCAGACACCTTATCAGACCCCACTTA
ACATTGTTAGTTTGAAACATGTATTTTTCTCTTGAGAGTGCTTAAAGCTT
GGAATGCAAAAAAGTATATTTCAGAAAATCAGTTGTGAAGAAGGCTTGAA
TTTTTTCATCAAGAGGAAAATTTATTTCACTGGGTTTTGCTGTCCATGAC
AGCTTAAAAGAAACTTTTAGTATGCTAAAAATTAGCATCTCTTATAATTA
AATTTGTTTTCATTTTCAAAGTAAGTTATACAAATCTTTTCTAAACAATT
TTTAAAGTGTTTGAATTTTGTGCTTGTATTCCACAAACATTATGAAAAAA
GAGGTTTCTAAAGGTTTGGGTCAAATTTTTAACATTTACACAGATTTTGC
TTGCATTTGCATGCAGCTAAATTCAATTACCTTTAAGCCAGTTGGAACTA
CCAAATTCATAGTTTTTTTTTGCAGACTAAATAATTGGTTGAATACAAAA
CAGGGAAATGTGGCATTTCAGGGTAACTGGACGACAGGCAAGGAAAGTCA
AGGTCTTGTGTGAAAATAGTTTACTAGCAGATGTACATGAATTAATTATA
ATGCGTATTTTACTTCGAGTACTAAATTAAATTTTGCTTTGAAATAAACT
TTGGTGAAATTCAATGTTATCTACATTTATTACAATCTTTTATATTTTAC
AATGCATTTTTCACTTTGAAGTTATTGAAGTCAAAATTTACTAAATTTCT
TACATTAATCAGCAGTCGCAACGTCTAGTTGTTATATTTTAATTAGTTGA
TCAAATTCATTGTAACCTTTCAACTTTCTGGTAAAAAAAATTACAGAGAT
AAATAAAGTGTAGGAGTGAGAGTTATATATTTCCTCGAACTTTCTATTGT
GGTTTACATTTACTGTTTATTGGAAAAAGAAAAAGATTTTTGAGATTGAT
CTTTATCGTTGAAAGTTCATGCGTCCGTTGGTTAGTCAAAAGATAAGGTC
TCTTTCTGATTATAGCAACCAAGAAACATTTTTAAGTAATGGCCACTTTA
ATTAAGTCATCTTTTCGTTTATTACTTAATCGATGTTTTGTGGTTTGACT
TTCTCTATTAGATATTGTTGGTATGGATTGACCTGATCATTTTAACCTAA
TTAATGTCATAACTTCCTTTTAATCACTTCCTACTGCATTTTGTGGCATT
TTTTTTTCTCCCTTAAAATTCTTTTTTGAAAATATTATTTTTATGGCGTA
GGAATTGTCTTTAGAGAGCGATTAGTGATCTTTTGCAAAAAGCTTTTTGG
ACCTTATTTTTATGTGAGATTAACCATTCTTTTATTGATATTAGCAATGA
CTTGACTTGGATTTAGAAAATATTGTTAAAGGGAAGATTCTCAGAAACGA
CCAACTTCTCTCCCTTCTCCATTTTATTATCATTATGATGATTTCTCATT
CTTCCATTTCTCATCTCTTGAGAAAAAAAGGAAACTTTTTTGTTGAAAAA
GGCTATAAAAAATCATTCGGTTTTTAATTACCGATTTTCTTTATTTTCCT
CTCTGTATAATGACACTAGACGCCCACGCTGGAAGGATAGGGTCCCATCT
TTTTACAAAATGAAAAATAATATGAAAAAGAGGGAATAGAAGGAATATAC
AGGACGAGTAGATTGTTTTGTTACTCTAATAAAAACAATGTACAAATTAG
AAAAAGGCCACCAATCACTCGTAATATAAACAAACTTTTCACTTCAAAGA
TCTCCTACAGAGTCATTACACTATTTTTTGTACCATTTTTCAATTTTTCA
ATTTTCTTATTTCAATATTCCCATTTTCCCTTATTTTCACACAAAACCTC
ATAGTTGAAAAGGTCTACTTTTATCAAATACGTAAACAATAAGAAAAGGT
GTCCATCAAGAAGCATGTTTCATTCTCTCATATTTCCAAAATGTCATTAA
CCAGAAAATTTGTATATATTTATTTGCCTGGATATCCTATGATTTCAATA
GTTTTGTTATCTGAAATTGTCTCTTTAAAGAGCATAAAATCCTTTATTGA
ATGAGAACTGATCCCTTTTGAATAACAAAGGTATAAAAGGAGATCGTTCC
CGGTATTCGGTATCTAAAAACTTGCAGCAAAATCTGCAATTCTTAAATTA
GAGAATGCGTCATATTAGTTAAAATTGTATACAGTTTTTTAAAAACCAAC
GAGGCTAAAATTGAAAAATTGAAAAATTTAAGAACAATGCTTGACCGTGG
AACTAATGAATTTTGCAAGGACTTTAAGGTTCGAAGAATTAAAAATCAGA
TCTGAAAATACCTCATTTTGGCCCTAAAAAGCTAAAGACATTGTGGCTCA
AAGTGTCAAAATAATATGAGCAGTCGTGCCTCAACAAACATTAACTGGCT
CTTACGGTTCTTATAAAAATGTATATTTGATAAATTTCTCGTATCACATC
AGTGTTTTTATTAGCAAGTTTTCTTTGCTATACATCTGCCCTTTGATTTT
CGAAAATCTTCGATTTATTGATATTATCACAACTTACATAGAAGGGGTCC
TCTAATTATACCGTTCTTCGAAACATTTTGCACGCTGTTACTAAAATTAA
ATCGAATAGCCTGGTGATTGAGGATTATTTTATAACTAAAACCATTCTGC
ATTCAAGCTGGGTCATCGAACTTTTCGTTCTTTACACAAAAGAAATTCCC
GTAAGCTTCATCACTGAAAAACAGAAGGCTCACCCTCATAACGTCTGTTT
TTATCCATTCAGGGATTCATCCATTTCAAAACTCTTTTTCGTTAGCCTTT
TTGGCTAACTGCCCTGGGATTTATTTTAAAAAGAAATTTGAAAATTCTAT
CACCCTCTTCTCCTACCTTCTCATCTTGATTTAGAAGGAATTCAGAAGTT
CATTGAGTAATTCGTACATACCAATAGTCACTTAGACATCCAAAAATTCA
GTTCGTGATATGAACTGAATGTTCGTCGGTTGAATTAAAATGTAGTTAAA
ATAATATCAGTGTGATTCTGACGTAGAGTCGAACACCACTGCTAACTCGG
CTTTATCCTTTAAACAGCTTAAGGTTCCCATGTACCTTCGTTTCGTTGCC
AGTTAATTTAAAGTTCGTTGCCACATTCCGTTTCCTATAAGATTATGTTA
AATAGTCTTGCAATAGTTTTGTTACCAATTAAAATTTTATTTACAGCCTC
GTGGATATATGACATACGGCATTGCCTACACTGAGATATCCGAAGTCCTG
AGGAACGTACAAAATGGCACCAAGCCTCCATACACCATACATTTCGTGCT
ACCCAGATTTGGTTCCTTATTGCTGCAGGTACCTATCGATTTTTTTTGTG
TGTCGTAAGGGATTGCTTTGGTTAATTAATATTGATCACTAATTTAACCC
TTTTTCATCTTTCCCTACACAGAAAATTCTGATAACTTTGAAATATGTAT
CTAAAGACCGGGCTACAAGATATCAAATACTCATGGGACAAATTGTTTCT
GTTACTAGTCTAGACTAGTTACTAGACTTTTTTTTGACAAATCAGCCTTC
CTGAACAGATTTCAGCCAAATCGATAACAAGCCAATCAGTCATTATACGT
GATTTTGAAAATGTCTTTAAAATACAAACCAAACAAGAGGCTGAACCAAA
ATTTTGCAAGATTATCAACTGGTCAAAACTTTGAGGACATAGCACTTGTC
AATTTTGAAATTTTTAAGATGTTCGAAGTGTTGTTAGGACCTTTTTTTGA
AACACTTGAAATATAAATAGGTTCACTGCAATTTACGGTAAAAAAGATGA
GGCTGAAATTTTCTGATTTTTCCTATGTAAGGGGCATCAACAATAGACGA
TATCGGCTTTATAGGACTTCAGGAGCTTCTCGAATTTTGTCATAATTAGA
GAGAAACCACGGTACAAACATTGTATAGCAGAAAAGCGAGGTAAAAATGG
TATATTCTTGTTATGGTTTTATTTTCAACAAAATTTACGAAAAGAAAGAT
TTAGTGTCCGTAAATAGACGATATCGGCTTCACGTGAAAACTCAGATTTG
ACCTCCGAAAATTGCCCACAATGCTTTGCGCGGAAAAAAGTTCACGGTGA
AATTTATTTTCGTAAATTTTGTTGAAAATAAACCATAACAAGAATATACC
ATTTTTACCTCGCTTTTCTGTTATACAATGTTTGTACCGTGGTTTCTCTC
TAATTATGACAAAATTTGAGAAGCTCCTGAAGTCCTATAAAGTAATATTT
GAAAATGAACAATTTTTTAGCTTAACTATCCTTCGTTTTTAGTTCAACTC
AGCTTACGAAAGAGACCAATGGTATTTCTCCATCTATTGGAAGGTAAGCC
AAAGTTAAATTTTGAAGAATTCCTACCAAAGTTCAGTTATAATGAGGTTT
TAAACCAGAAATACTCAATCTAAGTATTCGTTTAAACACTTTGAGATTTA
GATTGACGTACATTCGGTGGATGTTTTTTAAGAGAGCTAGAGTTGAAATC
GAGATGATCGTCTTTGCATTGCTCGCTCATTTTGGCTTGGTATTTAACTT
CAAAGGATTCAAAGGCATGTACGGAGTAGTAAACAAATGTTTAGAGATAG
GACACTGGAGAACTGAATATGAAAACATACAGTAAAACCTCTAATTAACG
GACACTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTAATTAGAGGTTCC
ACTGTATTCAATAAGTAAAATATAATTTGTGAAACCGGAACATGAAGAAA
ACGGAAAAATGGTTCAAAATCTTCGTTATCGTACACTGATAGAGATTTTA
GAATGCTAGACTATTTGAAAAAAATGAAAGACGAAAGAAATGACTAAAAC
AAAACAATAGTTCTAAGATTAAAAACGTGGGCTCGAAAATATTATTTTGG
TAGTGGATGGCGTATACACTCGCTGTAGGTAAATGGAATCATTCCATCCC
AAATGTTATCGATGATTTTACGGAACGTGATACATATCACGCCCCTGATT
CTAGAATACACTCAATTCTTGAAAGTGCAATGCAGGTAGAAACTCCACGT
TCAATGAAAGTTGGGGAAATCACAATTAAGATGATGAATTGGTGTGGGTG
TCGTGAAGATTTCCAATGAAAATTTAAGGAAGTTAATATGAAATATCATG
ACTTTCTGTTTAACTAACTTAACATAATACGTAATATAAAGTGGGTGACG
TGAAGCATATAAGGGAAAATTTTCAACCTTCTCTCTCTCTCTTACTACTT
ACATAATTACTCCATCGAAACGAGATAAAAAGCTAATAACATGAAACAAA
GGATTGGGAAATAATTCGTCTGCCTTATATCAGGCAACTGAGTATGATTT
ATAACACAATTCGTTTACGAAATGATGCTTTCCCATCGAAACTTACCCAA
TGTATACGCTCTTTTTTATAAGGATGAGTGAATTTTTAGACTTTTGTTTT
ATTGGCAATTTTAGTTTCCTTTTTTATTTTAGATCAAAATTGAGTTATTT
TGGCTTTAAAGCCATTTTTTACTACTATGACTTCTAAAATACTTGAAATT
CAGGCTCGGCATTGTTCTTATTTTTTTGAGATTTTTAGTCACATTGCCCG
GAGTAATTGTGCTTATAAATAAAGGAGTGTTATTTTTGCCAAAAGTGAAA
GCTTTTTCTATGAAATATTTGTTTTCGCACCGCTCAGCATTTCTGAGAAC
TTCATGTTTACATTTCGTCATAGAAGCTATAAGTCATGAACAAGTTTTGT
ATAAATGATAAAACAACCATCTAACAGGCATTAAAGTTGTTGACTGACGA
CGGTAACAAGATGTTTTTGAAGAAGTTTTTTAAGAAGCGTAAAACAGTAC
ATAAAGAACCTGCTACTGGTTCTGAGGTATTTGAGTGGCTTCCAATTACA
TTTAGATATCTCTAATTTGATCTCGGGCCTTTGAAAATCAAATAAGAGAT
ATTAATTACATTAATCATAGATATTAATCACCAAGTGCAAGTAGAGGGGA
CATCGTTTGAACTCATTAAAGAGCTGACCTTTTAACAGGAACAACAATCG
GACTTCGAAATCAATTTTTGAGAAATCAGTTGGTTTGTTGGTACCTATTA
TAAACTCTTGTAACAACCTTTCAGGCTATGCATAACTTTTGCTATTTTCT
TTCAGATAACGGCCTCACGGATACGAAAGCTTCATACCAAAATTAAACGC
TCCGATGAACTCATTAACGAGCTGAAGGTTTGTCTTAATTATGTTTGTAA
TCGAACTGCTTGGAAGCTTTTCTTGGCGCCATGAAACTCGTAGTTTGAAA
TAACAACTATACCTCAGTCCTAGGTTTGAAATTCCTGCCTTGACAAAATG
TAGTTTTGTAATCAGCCAGGCTGTGTTTAAAGCATCCATTTGAAGCCTTG
GGAGGCGATATTTTTAAGTTGACTGACCAGGGTGTGGCCTGAGTCCATAA
CTGATCCCACCTTATCTCTTCGACTCCTGTTTCTGAGAGATTTTTTCAAA
TTATCAAAGTCTGTCTCAATATAATCTGCAACGGAGACAAAAAAGGCTAT
GACTTTTGATAGAATTCGAATTAGATAGGGTTTGTGCTCGTTAAAAAGAG
ATATGAAGATATATATGGAGTGAAATATAAAAAAAGAAACAAAAATTTCA
CTTATTTGATGGTGCCCTGAGCTGCCCTGAGATCAAAAAATCAATCTTGT
GAAAATGATAATTATAGCACAGTTAATGAAGAAGTTGATTTTTTTCTTCT
TTATTTTCAATTTTCATTTCCCGATATTTTTTAATATTTTCTTTTTGATA
ATATTCAAGGCCTGTTTATCTTTTCAACATTACTAATTAGATAACGATCT
AATTCAAATTTTATCAAAACTCACAGCCTGTTTTTTCTCCACTGCAGATT
ATATTGAGACAGTCTACAACTATTGCAAGTTCAAGCATGACGGCGTCTGC
CTCCAGAAGCACCAAAACCTCTAGGAAATAAAATACTTTCGCACGTTTTG
AATTTGACATTTTGTAACATTGTTTTTCCTCTTAGGAACTGATAAATACA
TGTCTCGCCATGCCAATTTCCGACAGCAATGTTTTTCAATTACCACTCAA
CGCTGTGTCAAGTCTACTGCTTTTGGTATGAATATTTTCTTTGTTTTCCA
AATCCAACCTTTTCAATATTGAGTTCTTTTTCTGCTTTCTCATTAATCTC
CTCTTCACAATAATGAAGCCTGTTTTTTGAAAGTTTGAATTATTGAATTG
TGTAATAATTTCTTCTAGCATGGACATGAGATCGGTGAATCTTTGAGAGT
TGAAATTCTGAAGGTAAGTTTTCTCATCTTCTATCGTGGTCATTACACAA
GTATTTAGCCATCCATCCATCTTGCCTTTTTTCGATTTTTTTTTATCTTA
ACCGGAATACTTAAGTTTTAGTTTCGTGTAATGAAGTACTCTTATCATCG
TCAAAGAACTTAAGATATTTTATTTAAGTTTCTTGTCATCAGGTAGTGCT
TCAAAATTTGAAATCGTAGAAAATGCTACTTTACCCATGATGTTGATGAC
GATGTCTTAGTTTTTTTCCCGCATTAGCCATCAGTAATTAAAGACTGCTA
ATTTAATCGTTTCATTTCTTTGTCTGTAGGTGACCGC

Coding sequence (CDS) from alignment at sc0000018:1046266..1059252-

>TCONS_00002190 ID=TCONS_00002190|Name=TCONS_00002190|organism=Clytia hemisphaerica|type=CDS|length=4599bp|location=Sequence derived from alignment at sc0000018:1046266..1059252- (Clytia hemisphaerica)
GTGACCCATGGACATGAGATCGGTGAATCTTTGAGAGTTGAAATTCTGAA
GGAACTGATAAATACATGTCTCGCCATGCCAATTTCCGACAGCAATGTTT
TTCAATTACCACTCAACGCTGTGTCAAGTCTACTGCTTTTGATAACGGCC
TCACGGATACGAAAGCTTCATACCAAAATTAAACGCTCCGATGAACTCAT
TAACGAGCTGAAGTTCAACTCAGCTTACGAAAGAGACCAATGGTATTTCT
CCATCTATTGGAAGCCTCGTGGATATATGACATACGGCATTGCCTACACT
GAGATATCCGAAGTCCTGAGGAACGTACAAAATGGCACCAAGCCTCCATA
CACCATACATTTCGTGCTACCCAGATTTGGTTCCTTATTGCTGCAGATGG
TACTAATGGATAAAGAGACCACTGACATTAAAGTCAATCTGATAACAAAG
GAGCCAGATGTATCATTCAAGAAGCCACCTTTACAAAGGAGTCTTTCTAA
TGGAACTCGGTACCCCTTGTTAACACAGGGTGAATGCCAAGTATGTCGAA
TCGCTCACCATAAGAACTTAATTCAAAAGATAATTTTTTCCAAACCGTTG
CGTAAATGGGAGACCCACCAATTAAATCTCTCAGAGAGCAACATCTCAGC
CTCAAGTGTGACCCATGGACATGAGATCGGTGAATCTTTGAGAGTTGAAA
TTCTGAAGGAACTGATAAATACATGTCTCGCCATGCCAATTTCCGACAGC
AATGTTTTTCAATTACCACTCAACGCTGTGTCAAGTCTACTGCTTTTGAT
AACGGCCTCACGGATACGAAAGCTTCATACCAAAATTAAACGCTCCGATG
AACTCATTAACGAGCTGAAGTTCAACTCAGCTTACGAAAGAGACCAATGG
TATTTCTCCATCTATTGGAAGCCTCGTGGATATATGACATACGGCATTGC
CTACACTGAGATATCCGAAGTCCTGAGGAACGTACAAAATGGCACCAAGC
CTCCATACACCATACATTTCGTGCTACCCAGATTTGGTTCCTTATTGCTG
CAGATGGTACTAATGGATAAAGAGACCACTGACATTAAAGTCAATCTGAT
AACAAAGGAGCCAGATGTATCATTCAAGAAGCCACCTTTACAAAGGAGTC
TTTCTAATGGAACTCGGTACCCCTTGTTAACACAGGGTGAATGCCAAGTA
TGTCGAATCGCTCACCATAAGAACTTAATTCAAAAGATAATTTTTTCCAA
ACCGTTGCGTAAATGGGAGACCCACCAATTAAATCTCTCAGAGAGCAACA
TCTCAGCCTCAAGTGTGACCCATGGACATGAGATCGGTGAATCTTTGAGA
GTTGAAATTCTGAAGGAACTGATAAATACATGTCTCGCCATGCCAATTTC
CGACAGCAATGTTTTTCAATTACCACTCAACGCTGTGTCAAGTCTACTGC
TTTTGATAACGGCCTCACGGATACGAAAGCTTCATACCAAAATTAAACGC
TCCGATGAACTCATTAACGAGCTGAAGTTCAACTCAGCTTACGAAAGAGA
CCAATGGTATTTCTCCATCTATTGGAAGCCTCGTGGATATATGACATACG
GCATTGCCTACACTGAGATATCCGAAGTCCTGAGGAACGTACAAAATGGC
ACCAAGCCTCCATACACCATACATTTCGTGCTACCCAGATTTGGTTCCTT
ATTGCTGCAGATGGTACTAATGGATAAAGAGACCACTGACATTAAAGTCA
ATCTGATAACAAAGGAGCCAGATGTATCATTCAAGAAGCCACCTTTACAA
AGGAGTCTTTCTAATGGAACTCGGTACCCCTTGTTAACACAGGGTGAATG
CCAAGTATGTCGAATCGCTCACCATAAGAACTTAATTCAAAAGATAATTT
TTTCCAAACCGTTGCGTAAATGGGAGACCCACCAATTAAATCTCTCAGAG
AGCAACATCTCAGCCTCAAGTGTGACCCATGGACATGAGATCGGTGAATC
TTTGAGAGTTGAAATTCTGAAGGAACTGATAAATACATGTCTCGCCATGC
CAATTTCCGACAGCAATGTTTTTCAATTACCACTCAACGCTGTGTCAAGT
CTACTGCTTTTGATAACGGCCTCACGGATACGAAAGCTTCATACCAAAAT
TAAACGCTCCGATGAACTCATTAACGAGCTGAAGTTCAACTCAGCTTACG
AAAGAGACCAATGGTATTTCTCCATCTATTGGAAGCCTCGTGGATATATG
ACATACGGCATTGCCTACACTGAGATATCCGAAGTCCTGAGGAACGTACA
AAATGGCACCAAGCCTCCATACACCATACATTTCGTGCTACCCAGATTTG
GTTCCTTATTGCTGCAGATGGTACTAATGGATAAAGAGACCACTGACATT
AAAGTCAATCTGATAACAAAGGAGCCAGATGTATCATTCAAGAAGCCACC
TTTACAAAGGAGTCTTTCTAATGGAACTCGGTACCCCTTGTTAACACAGG
GTGAATGCCAAGTATGTCGAATCGCTCACCATAAGAACTTAATTCAAAAG
ATAATTTTTTCCAAACCGTTGCGTAAATGGGAGACCCACCAATTAAATCT
CTCAGAGAGCAACATCTCAGCCTCAAGTGTGACCCATGGACATGAGATCG
GTGAATCTTTGAGAGTTGAAATTCTGAAGGAACTGATAAATACATGTCTC
GCCATGCCAATTTCCGACAGCAATGTTTTTCAATTACCACTCAACGCTGT
GTCAAGTCTACTGCTTTTGATAACGGCCTCACGGATACGAAAGCTTCATA
CCAAAATTAAACGCTCCGATGAACTCATTAACGAGCTGAAGTTCAACTCA
GCTTACGAAAGAGACCAATGGTATTTCTCCATCTATTGGAAGCCTCGTGG
ATATATGACATACGGCATTGCCTACACTGAGATATCCGAAGTCCTGAGGA
ACGTACAAAATGGCACCAAGCCTCCATACACCATACATTTCGTGCTACCC
AGATTTGGTTCCTTATTGCTGCAGATGGTACTAATGGATAAAGAGACCAC
TGACATTAAAGTCAATCTGATAACAAAGGAGCCAGATGTATCATTCAAGA
AGCCACCTTTACAAAGGAGTCTTTCTAATGGAACTCGGTACCCCTTGTTA
ACACAGGGTGAATGCCAAGTATGTCGAATCGCTCACCATAAGAACTTAAT
TCAAAAGATAATTTTTTCCAAACCGTTGCGTAAATGGGAGACCCACCAAT
TAAATCTCTCAGAGAGCAACATCTCAGCCTCAAGTGTGACCCATGGACAT
GAGATCGGTGAATCTTTGAGAGTTGAAATTCTGAAGGAACTGATAAATAC
ATGTCTCGCCATGCCAATTTCCGACAGCAATGTTTTTCAATTACCACTCA
ACGCTGTGTCAAGTCTACTGCTTTTGATAACGGCCTCACGGATACGAAAG
CTTCATACCAAAATTAAACGCTCCGATGAACTCATTAACGAGCTGAAGTT
CAACTCAGCTTACGAAAGAGACCAATGGTATTTCTCCATCTATTGGAAGC
CTCGTGGATATATGACATACGGCATTGCCTACACTGAGATATCCGAAGTC
CTGAGGAACGTACAAAATGGCACCAAGCCTCCATACACCATACATTTCGT
GCTACCCAGATTTGGTTCCTTATTGCTGCAGATGGTACTAATGGATAAAG
AGACCACTGACATTAAAGTCAATCTGATAACAAAGGAGCCAGATGTATCA
TTCAAGAAGCCACCTTTACAAAGGAGTCTTTCTAATGGAACTCGGTACCC
CTTGTTAACACAGGGTGAATGCCAAGTATGTCGAATCGCTCACCATAAGA
ACTTAATTCAAAAGATAATTTTTTCCAAACCGTTGCGTAAATGGGAGACC
CACCAATTAAATCTCTCAGAGAGCAACATCTCAGCCTCAAGTGTGACCCA
TGGACATGAGATCGGTGAATCTTTGAGAGTTGAAATTCTGAAGGAACTGA
TAAATACATGTCTCGCCATGCCAATTTCCGACAGCAATGTTTTTCAATTA
CCACTCAACGCTGTGTCAAGTCTACTGCTTTTGATAACGGCCTCACGGAT
ACGAAAGCTTCATACCAAAATTAAACGCTCCGATGAACTCATTAACGAGC
TGAAGTTCAACTCAGCTTACGAAAGAGACCAATGGTATTTCTCCATCTAT
TGGAAGCCTCGTGGATATATGACATACGGCATTGCCTACACTGAGATATC
CGAAGTCCTGAGGAACGTACAAAATGGCACCAAGCCTCCATACACCATAC
ATTTCGTGCTACCCAGATTTGGTTCCTTATTGCTGCAGATGGTACTAATG
GATAAAGAGACCACTGACATTAAAGTCAATCTGATAACAAAGGAGCCAGA
TGTATCATTCAAGAAGCCACCTTTACAAAGGAGTCTTTCTAATGGAACTC
GGTACCCCTTGTTAACACAGGGTGAATGCCAAGTATGTCGAATCGCTCAC
CATAAGAACTTAATTCAAAAGATAATTTTTTCCAAACCGTTGCGTAAATG
GGAGACCCACCAATTAAATCTCTCAGAGAGCAACATCTCAGCCTCAAGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001141XLOC_001141Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002190-proteinTCONS_00002190-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002190-exon-sc0000018-1575043694:1058690..1059252TCONS_00002190-exon-sc0000018-1575043694:1058690..1059252Clytia hemisphaericaexon
TCONS_00002190-exon-sc0000018-1575043694:1051375..1051506TCONS_00002190-exon-sc0000018-1575043694:1051375..1051506Clytia hemisphaericaexon
TCONS_00002190-exon-sc0000018-1575043694:1050360..1050410TCONS_00002190-exon-sc0000018-1575043694:1050360..1050410Clytia hemisphaericaexon
TCONS_00002190-exon-sc0000018-1575043694:1047676..1047747TCONS_00002190-exon-sc0000018-1575043694:1047676..1047747Clytia hemisphaericaexon
TCONS_00002190-exon-sc0000018-1575043694:1046778..1046867TCONS_00002190-exon-sc0000018-1575043694:1046778..1046867Clytia hemisphaericaexon
TCONS_00002190-exon-sc0000018-1575043694:1046590..1046634TCONS_00002190-exon-sc0000018-1575043694:1046590..1046634Clytia hemisphaericaexon
TCONS_00002190-exon-sc0000018-1575043694:1046266..1046273TCONS_00002190-exon-sc0000018-1575043694:1046266..1046273Clytia hemisphaericaexon
TCONS_00002190-exon-sc0000018-1510915933:1058690..1059252TCONS_00002190-exon-sc0000018-1510915933:1058690..1059252Clytia hemisphaericaexon
TCONS_00002190-exon-sc0000018-1510915933:1051375..1051506TCONS_00002190-exon-sc0000018-1510915933:1051375..1051506Clytia hemisphaericaexon
TCONS_00002190-exon-sc0000018-1510915933:1050360..1050410TCONS_00002190-exon-sc0000018-1510915933:1050360..1050410Clytia hemisphaericaexon
TCONS_00002190-exon-sc0000018-1510915933:1047676..1047747TCONS_00002190-exon-sc0000018-1510915933:1047676..1047747Clytia hemisphaericaexon
TCONS_00002190-exon-sc0000018-1510915933:1046778..1046867TCONS_00002190-exon-sc0000018-1510915933:1046778..1046867Clytia hemisphaericaexon
TCONS_00002190-exon-sc0000018-1510915933:1046590..1046634TCONS_00002190-exon-sc0000018-1510915933:1046590..1046634Clytia hemisphaericaexon
TCONS_00002190-exon-sc0000018-1510915933:1046266..1046273TCONS_00002190-exon-sc0000018-1510915933:1046266..1046273Clytia hemisphaericaexon
TCONS_00002190-exon-sc0000018-1491911889:1058690..1059252TCONS_00002190-exon-sc0000018-1491911889:1058690..1059252Clytia hemisphaericaexon
TCONS_00002190-exon-sc0000018-1491911889:1051375..1051506TCONS_00002190-exon-sc0000018-1491911889:1051375..1051506Clytia hemisphaericaexon
TCONS_00002190-exon-sc0000018-1491911889:1050360..1050410TCONS_00002190-exon-sc0000018-1491911889:1050360..1050410Clytia hemisphaericaexon
TCONS_00002190-exon-sc0000018-1491911889:1047676..1047747TCONS_00002190-exon-sc0000018-1491911889:1047676..1047747Clytia hemisphaericaexon
TCONS_00002190-exon-sc0000018-1491911889:1046778..1046867TCONS_00002190-exon-sc0000018-1491911889:1046778..1046867Clytia hemisphaericaexon
TCONS_00002190-exon-sc0000018-1491911889:1046590..1046634TCONS_00002190-exon-sc0000018-1491911889:1046590..1046634Clytia hemisphaericaexon
TCONS_00002190-exon-sc0000018-1491911889:1046266..1046273TCONS_00002190-exon-sc0000018-1491911889:1046266..1046273Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000018supercontigsc0000018:1046266..1059252 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
16.2764	15.55	5.50197	2.92658	38.4277	29.5617	41.6697	42.1906	30.4927	32.5996	27.0534	28.1839	30.5293	28.7398	17.0111	19.2042	35.7704	37.0628	37.1118	54.5787	44.4739	44.4535	31.2118	37.2774	34.7985	35.261	36.9381	32.3793	32.1513	32.7571
Blast
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BLAST of TCONS_00002190 vs. Swiss-Prot (Human)
Match: CMIP (C-Maf-inducing protein OS=Homo sapiens GN=CMIP PE=1 SV=3)

HSP 1 Score: 115.546 bits (288), Expect = 4.774e-28
Identity = 61/172 (35.47%), Postives = 106/172 (61.63%), Query Frame = 3 
Query:  384 PLQRSL--SNGTRYPLLTQGECQVCRIAHHKNLIQKIIFSKPLRKWETHQLNLSESNISASSPRGYMTYGIAYTEISEV-LRNVQNGTKPPYTIHFVLPRFGSLLLQFNSAYERDQWYFSIYWKITASRIRKLHTKIKRSDELINELKELINTCLAMPISDSNVFQLPLNAV 890
            P +R+L   NG RY LL +G+ QVC I H +  + KI+ SK LR+WE H L L+++++++++P GYM   ++Y+ I +V L + +N   P Y +   +P  G++LLQ  ++Y RDQW+ S+ WK    + +K+ +   R + ++ E++ L++  L  P+ D ++ Q PL  V
Sbjct:   39 PCRRALLLCNGMRYKLLQEGDIQVCVIRHPRTFLSKILTSKFLRRWEPHHLTLADNSLASATPTGYMENSVSYSAIEDVQLLSWENA--PKYCLQLTIPG-GTVLLQAANSYLRDQWFHSLQWKKKIYKYKKVLSNPSRWEVVLKEIRTLVDMALTSPLQDDSINQAPLEIV 207
The following BLAST results are available for this feature:
BLAST of TCONS_00002190 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CMIP4.774e-2835.47C-Maf-inducing protein OS=Homo sapiens GN=CMIP PE=... [more]
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