TCONS_00002187 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002187
Unique NameTCONS_00002187
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length346

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002187 ID=TCONS_00002187|Name=TCONS_00002187|organism=Clytia hemisphaerica|type=transcript|length=346bp
CAGGCATTGGTTTCACTTCTGGACTTTGACTTGATGAAAGACGAAGAAGA
GAACCTGGAAATTATTGCTGCTTTACAAAGTTCTGATGAAGGACAAAAAC
AATACGACCAACTGTGCACTAAGAAAGAAGAATTCATTAACATGAAAAAG
AGTGGAGGACCTCACAAGCTAACATTACCTTCACAATCAACGGACGAGGA
CTTGATTCACGTGTTAAAGAACGGTTCTTTTGGCAATCTACAAAGTTTGA
ACCTTGCGTTCACCAGTGTGACGAGTGATTCAGCTGACTACATCATCAAG
TTACCTAGTCTCATTCACCTCAATCTTTGGGCAACACAGGTATTTA
Run BLAST on NCBI

protein sequence of TCONS_00002187-protein

>TCONS_00002187-protein ID=TCONS_00002187-protein|Name=TCONS_00002187-protein|organism=Clytia hemisphaerica|type=polypeptide|length=115bp
QALVSLLDFDLMKDEEENLEIIAALQSSDEGQKQYDQLCTKKEEFINMKK
SGGPHKLTLPSQSTDEDLIHVLKNGSFGNLQSLNLAFTSVTSDSADYIIK
LPSLIHLNLWATQVF
Run BLAST on NCBI

transcript from alignment at sc0000018:1040911..1042077-

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002187 ID=TCONS_00002187|Name=TCONS_00002187|organism=Clytia hemisphaerica|type=transcript|length=1167bp|location=Sequence derived from alignment at sc0000018:1040911..1042077- (Clytia hemisphaerica)
CAGGCATTGGTTTCACTTCTGGACTTTGACTTGATGAAAGACGAAGAAGA
GAACCTGGAAATTATTGCTGCTTTACAAAGTTCTGATGAAGGACAAAAAC
AATACGACCAACTGTGCACTAAGAAAGAAGAATTCATTAACATGGTTCGT
CTTCGAAATGTGTTAAAAGTTCTTTATGATTCACCAAATTGGCTGTTCCA
AAAAAATATCCTTACAGGGGTGAACAAACCTTTTCAAGGCAAAGAAAAAT
TTTTAGAAATGTGTGAATACCCCCTGGAAAATGTCAAAATTTGCAAAAGA
ACCCTTGGAAAAATTCTTTTCATATCTTAAAAGTGAGAGTGGTTGAACTA
AAATCAGTCTTTTGCCCCCTCCCCCTGGAAGTTTTGAAATGACCTTTTAC
CCCCTGGAAAAATGAAAAAATATTTATACCCCCTGGAAATTCTTCTCTGA
TTACCCCCTGGAAATTTTCGTCCACCCCCCTGTTTGGATATAAAATGGAA
TGGCCCAATGTTAAAGATTGTCAAGTTGGTCGATTTTCTCCAAGGGGACA
GCAGATATGTAGTAAAGCTGGTGCCTTGAATATGAGGGAATGTTGATTAT
TTTACAGACTTAATGCTTTGAACGGATTTGAGGAAATTTACTAGATTTTA
GGTCCTTTAGTTTTGGCTCACTAGTATTATTCTCCTTTGTTTCACGAATT
GCCGAATTTTCCGTGGCTTTTTTTAAGAACTGACAATGTACAATGTCACT
GCATTTTCTATATTTTTTCAACCTTTCTTTTAGAAAAAGAGTGGAGGACC
TCACAAGCTAACATTACCTTCACAATCAACGGTAACTTATTTTCTTTTGA
TATTCACTACAGGCTTCGTTGAACGTTTCTCAATATAACATGGCTCAAAT
GACTGAAATGAGAATTCAACGTAAAGCTTTTCCTCGAGAGTAACGAGAGG
ACAGAGTTTTTTTTTGGTTCTCAGTATTGATATTTTGATAATCTTTTCTC
TACCTTTTGTTAGGACGAGGACTTGATTCACGTGTTAAAGAACGGTTCTT
TTGGCAATCTACAAAGTTTGAACCTTGCGTTCACCAGTGTGACGAGTGAT
TCAGCTGACTACATCATCAAGTTACCTAGTCTCATTCACCTCAATCTTTG
GGCAACACAGGTATTTA

Coding sequence (CDS) from alignment at sc0000018:1040911..1042077-

>TCONS_00002187 ID=TCONS_00002187|Name=TCONS_00002187|organism=Clytia hemisphaerica|type=CDS|length=1035bp|location=Sequence derived from alignment at sc0000018:1040911..1042077- (Clytia hemisphaerica)
GACGAGGACTTGATTCACGTGTTAAAGAACGGTTCTTTTGGCAATCTACA
AAGTTTGAACCTTGCGTTCACCAGTGTGACGAGTGATTCAGCTGACTACA
TCATCAAGTTACCTAGTCTCATTCACCTCAATCTTTGGGCAACACAGGTA
TTTAAAAAGAGTGGAGGACCTCACAAGCTAACATTACCTTCACAATCAAC
GCAGGCATTGGTTTCACTTCTGGACTTTGACTTGATGAAAGACGAAGAAG
AGAACCTGGAAATTATTGCTGCTTTACAAAGTTCTGATGAAGGACAAAAA
CAATACGACCAACTGTGCACTAAGAAAGAAGAATTCATTAACATGGACGA
GGACTTGATTCACGTGTTAAAGAACGGTTCTTTTGGCAATCTACAAAGTT
TGAACCTTGCGTTCACCAGTGTGACGAGTGATTCAGCTGACTACATCATC
AAGTTACCTAGTCTCATTCACCTCAATCTTTGGGCAACACAGGTATTTAA
AAAGAGTGGAGGACCTCACAAGCTAACATTACCTTCACAATCAACGCAGG
CATTGGTTTCACTTCTGGACTTTGACTTGATGAAAGACGAAGAAGAGAAC
CTGGAAATTATTGCTGCTTTACAAAGTTCTGATGAAGGACAAAAACAATA
CGACCAACTGTGCACTAAGAAAGAAGAATTCATTAACATGGACGAGGACT
TGATTCACGTGTTAAAGAACGGTTCTTTTGGCAATCTACAAAGTTTGAAC
CTTGCGTTCACCAGTGTGACGAGTGATTCAGCTGACTACATCATCAAGTT
ACCTAGTCTCATTCACCTCAATCTTTGGGCAACACAGGTATTTAAAAAGA
GTGGAGGACCTCACAAGCTAACATTACCTTCACAATCAACGCAGGCATTG
GTTTCACTTCTGGACTTTGACTTGATGAAAGACGAAGAAGAGAACCTGGA
AATTATTGCTGCTTTACAAAGTTCTGATGAAGGACAAAAACAATACGACC
AACTGTGCACTAAGAAAGAAGAATTCATTAACATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001138XLOC_001138Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002187-proteinTCONS_00002187-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002187-exon-sc0000018-1575043694:1041934..1042077TCONS_00002187-exon-sc0000018-1575043694:1041934..1042077Clytia hemisphaericaexon
TCONS_00002187-exon-sc0000018-1575043694:1041247..1041294TCONS_00002187-exon-sc0000018-1575043694:1041247..1041294Clytia hemisphaericaexon
TCONS_00002187-exon-sc0000018-1575043694:1040911..1041064TCONS_00002187-exon-sc0000018-1575043694:1040911..1041064Clytia hemisphaericaexon
TCONS_00002187-exon-sc0000018-1510915933:1041934..1042077TCONS_00002187-exon-sc0000018-1510915933:1041934..1042077Clytia hemisphaericaexon
TCONS_00002187-exon-sc0000018-1510915933:1041247..1041294TCONS_00002187-exon-sc0000018-1510915933:1041247..1041294Clytia hemisphaericaexon
TCONS_00002187-exon-sc0000018-1510915933:1040911..1041064TCONS_00002187-exon-sc0000018-1510915933:1040911..1041064Clytia hemisphaericaexon
TCONS_00002187-exon-sc0000018-1491911889:1041934..1042077TCONS_00002187-exon-sc0000018-1491911889:1041934..1042077Clytia hemisphaericaexon
TCONS_00002187-exon-sc0000018-1491911889:1041247..1041294TCONS_00002187-exon-sc0000018-1491911889:1041247..1041294Clytia hemisphaericaexon
TCONS_00002187-exon-sc0000018-1491911889:1040911..1041064TCONS_00002187-exon-sc0000018-1491911889:1040911..1041064Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000018supercontigsc0000018:1040911..1042077 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
12.8215	11.3155	3.85819	2.22779	14.4268	14.0406	13.7209	13.6865	31.8687	33.6119	26.333	28.1242	31.8468	21.8775	17.8425	16.5857	34.1748	39.0575	43.4802	65.6509	39.269	34.6805	28.7851	36.5839	16.0235	12.3493	51.1148	36.7765	37.5248	28.0347
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR032675L_dom-like
Blast
[Close]
BLAST of TCONS_00002187 vs. Swiss-Prot (Human)
Match: CMIP (C-Maf-inducing protein OS=Homo sapiens GN=CMIP PE=1 SV=3)

HSP 1 Score: 124.79 bits (312), Expect = 1.071e-33
Identity = 55/113 (48.67%), Postives = 88/113 (77.88%), Query Frame = 1 
Query:    1 QALVSLLDFDLMKDEEENLEIIAALQSSDEGQKQYDQLCTKKEEFINMKKSGGPHKLTLPSQSTDEDLIHVLKNGSFGNLQSLNLAFTSVTSDSADYIIKLPSLIHLNLWATQ 339
            + L  +L+++++ + +  L+II+ L+S+D G++ Y+QLC ++ E   +++ GGP +LTLPS+STD DL  +L +GSFGNL++L+LAFT+VTS  A+++IKLPSL  LNLW+TQ
Sbjct:  585 EILCLMLEYNIIDNNDTQLQIISTLESTDVGKRMYEQLCDRQRELKELQRKGGPTRLTLPSKSTDADLARLLSSGSFGNLENLSLAFTNVTSACAEHLIKLPSLKQLNLWSTQ 697
The following BLAST results are available for this feature:
BLAST of TCONS_00002187 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CMIP1.071e-3348.67C-Maf-inducing protein OS=Homo sapiens GN=CMIP PE=... [more]
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