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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00002186 ID=TCONS_00002186|Name=TCONS_00002186|organism=Clytia hemisphaerica|type=transcript|length=1646bp
CTTTACCACTTTCACATTTCAGTTTGATGACCGTGGTTTGATCTTGATAT
CTGAACACCTACCGAAGTTGCAAAGTTTGAATCTGTGTGAAACTGCTGTC
ACTGACGAGGGGCTGAACGCGTTGGTGTTTTTGGAAAACCTGCAGATTTT
GAACTTGAACAGCACTAAATTATCTGCATTGACGTACGAAATGCTCAAGG
AAAAACTGCAAGAGCTGAAAGTAGTTGACTTGAGGTACACAGAGGCATGG
CCTTGACACGAAGTTCACCACACACTAACAAGACGTATGTGCAAAtcatt
tgaaaagatattttaaagaCATTGCGCATATATGGTAAACTAGGAGAAAA
GGAAGAATGGTGGTACTTGTTGGAGCGTATTGAGATCAAACCAAACAAGT
TTCTCGACCGTATTGCATTCCCTTGTGAATCGATACAGATttatttttaa
ggctttaatGACAGAATGAACACTTGGCTATCAAATTCTTCTTCTTGGAT
AATAATGTCACGGCACTCAAGTATCAAATTTAAGCGATCGAATGAAAATA
CATTGTAAAAAGTACAAATTGATATCGGAAATTAAATGTTTGGCACGGTA
CCGTCTTAATGACAAAATGAGACGTGATTATTGTTAATATTTTATTGCAA
TGTAATGACTGGATTGATTGTATAGTATACATTGGAAAAGATTCTTAAAA
CACTGGGGATTGGTTTCTTCCATATCTAAGAGTTTCATGATgaggaaaga
aaaatattccccatatatatttgacatttatttacaaaaaagaaTTCACT
ACCCTATCCAGACTCTTGATATTGAATGGTAAAATTTATGTAAAGATAAT
ATATTATTAAATGAGCAATGAAATGAGCAATGAAAGGAGGAGGAATTTAG
CATGGTACTGGTCTTTTGATAGGATTTATATGAAGCATTGATTGGCTGTT
CGgtgttcttttttaatttatgaaaaagtaaagaaattatttgaaaaatt
taaatgatGATGTTTTAGGCCTCACAAACAAGATTGAGATTCCTTTGAAA
GGAAATAACACTCAAAGATTCACTTTTGTTTAAAGCGATCATTTTAACGC
ATGACAGATAATTGCATCCTTTTTCCTCCTACGAGGTTCCGGACTATCGA
TACTTGTTGTTATAGATAGAAGAGAAAgagaatttttgttttattcagTT
ATTTACAAAATCTACCCCGTCTTCAACAAAGGTAGTAAATTTAGTGAATG
AAAGTCTCTTGCAATGCGCTCGGTCAATGGTATCGTGTTTCTTTTCATTT
GTGCATCACCATTATTATCATCGAATATTTAAGAGAGGTAATAGAAGAAG
ATATATTATTAtgtgtatttttcttttgtctttttttcttttgttgtata
tataagttatttttgtaaattgaaaaattctgCCTGCAATAAATATGATG
AGTAAAACGTAGGACTGAAACTGCAGACGGTTGCGGTTTTTTTGTGATGA
GAAAAGATATGCAGAATATACGGCACACAAAGGAAAACATCGTATTCTAC
TATTTCTCACGTGACGACAAGATGGGTGAGGTCTTTCAAGCTCTCTGTCT
TGTAGTAGTGGGGTTACTACAATAAATCCTATAACATTTAGCAGTA Run BLAST on NCBI transcript from alignment at sc0000018:1038688..1040697- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00002186 ID=TCONS_00002186|Name=TCONS_00002186|organism=Clytia hemisphaerica|type=transcript|length=2010bp|location=Sequence derived from alignment at sc0000018:1038688..1040697- (Clytia hemisphaerica)
CTTTACCACTTTCACATTTCAGTTTGATGACCGTGGTTTGATCTTGATAT
CTGAACACCTACCGAAGTTGCAAAGTTTGAATCTGTGTGAAACTGCTGTC
ACTGACGAGGGGCTGAACGCGTTGGTGTTTTTGGAAAACCTGCAGATTTT
GAACTTGAACAGCACTAAATTATCTGCATTGACGTACGAAATGCTCAAGG
TAAAAGAAATATGTTTAGAATTGTCTCTTAGTGGATATATTAATGCATAA
ATAAAAGCTGAGGACATTATTTTGAACGAGATATTCAAGTATTCATCCTT
TGGTAAACGGTACTTGATAATCAAATCTGACGTTTTTACGCTATCTGGCG
CGTTCCTAAACCAGACAATGTCAGGTTATTATCTGGCGCTGCTAGCTAGC
ATCAAAAAGCTAATTATACACATGGAACGAGGTTGTGATTACACCCTTTA
ACAAACCTAATGAGCTTGATCACTGGCTGATTTTACACAGAAAACATTCA
TTTGATTAATTATTTGTTACCGTCTTTTAGTCTTATCTTATGATATTTTA
ATGTTTTTCACAGGAAAAACTGCAAGAGCTGAAAGTAGTTGACTTGAGGT
ACACAGAGGCATGGCCTTGACACGAAGTTCACCACACACTAACAAGACGT
ATGTGCAAATCATTTGAAAAGATATTTTAAAGACATTGCGCATATATGGT
AAACTAGGAGAAAAGGAAGAATGGTGGTACTTGTTGGAGCGTATTGAGAT
CAAACCAAACAAGTTTCTCGACCGTATTGCATTCCCTTGTGAATCGATAC
AGATTTATTTTTAAGGCTTTAATGACAGAATGAACACTTGGCTATCAAAT
TCTTCTTCTTGGATAATAATGTCACGGCACTCAAGTATCAAATTTAAGCG
ATCGAATGAAAATACATTGTAAAAAGTACAAATTGATATCGGAAATTAAA
TGTTTGGCACGGTACCGTCTTAATGACAAAATGAGACGTGATTATTGTTA
ATATTTTATTGCAATGTAATGACTGGATTGATTGTATAGTATACATTGGA
AAAGATTCTTAAAACACTGGGGATTGGTTTCTTCCATATCTAAGAGTTTC
ATGATGAGGAAAGAAAAATATTCCCCATATATATTTGACATTTATTTACA
AAAAAGAATTCACTACCCTATCCAGACTCTTGATATTGAATGGTAAAATT
TATGTAAAGATAATATATTATTAAATGAGCAATGAAATGAGCAATGAAAG
GAGGAGGAATTTAGCATGGTACTGGTCTTTTGATAGGATTTATATGAAGC
ATTGATTGGCTGTTCGGTGTTCTTTTTTAATTTATGAAAAAGTAAAGAAA
TTATTTGAAAAATTTAAATGATGATGTTTTAGGCCTCACAAACAAGATTG
AGATTCCTTTGAAAGGAAATAACACTCAAAGATTCACTTTTGTTTAAAGC
GATCATTTTAACGCATGACAGATAATTGCATCCTTTTTCCTCCTACGAGG
TTCCGGACTATCGATACTTGTTGTTATAGATAGAAGAGAAAGAGAATTTT
TGTTTTATTCAGTTATTTACAAAATCTACCCCGTCTTCAACAAAGGTAGT
AAATTTAGTGAATGAAAGTCTCTTGCAATGCGCTCGGTCAATGGTATCGT
GTTTCTTTTCATTTGTGCATCACCATTATTATCATCGAATATTTAAGAGA
GGTAATAGAAGAAGATATATTATTATGTGTATTTTTCTTTTGTCTTTTTT
TCTTTTGTTGTATATATAAGTTATTTTTGTAAATTGAAAAATTCTGCCTG
CAATAAATATGATGAGTAAAACGTAGGACTGAAACTGCAGACGGTTGCGG
TTTTTTTGTGATGAGAAAAGATATGCAGAATATACGGCACACAAAGGAAA
ACATCGTATTCTACTATTTCTCACGTGACGACAAGATGGGTGAGGTCTTT
CAAGCTCTCTGTCTTGTAGTAGTGGGGTTACTACAATAAATCCTATAACA
TTTAGCAGTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00002186-exon-sc0000018-1575043694:1040499..1040697 | TCONS_00002186-exon-sc0000018-1575043694:1040499..1040697 | Clytia hemisphaerica | exon |
| TCONS_00002186-exon-sc0000018-1575043694:1038688..1040134 | TCONS_00002186-exon-sc0000018-1575043694:1038688..1040134 | Clytia hemisphaerica | exon |
| TCONS_00002186-exon-sc0000018-1510915933:1040499..1040697 | TCONS_00002186-exon-sc0000018-1510915933:1040499..1040697 | Clytia hemisphaerica | exon |
| TCONS_00002186-exon-sc0000018-1510915933:1038688..1040134 | TCONS_00002186-exon-sc0000018-1510915933:1038688..1040134 | Clytia hemisphaerica | exon |
| TCONS_00002186-exon-sc0000018-1491911889:1040499..1040697 | TCONS_00002186-exon-sc0000018-1491911889:1040499..1040697 | Clytia hemisphaerica | exon |
| TCONS_00002186-exon-sc0000018-1491911889:1038688..1040134 | TCONS_00002186-exon-sc0000018-1491911889:1038688..1040134 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000018 | supercontig | sc0000018:1038688..1040697 - |
Blast
BLAST of TCONS_00002186 vs. Swiss-Prot (Human)
Match: CMIP (C-Maf-inducing protein OS=Homo sapiens GN=CMIP PE=1 SV=3) HSP 1 Score: 97.0561 bits (240), Expect = 5.881e-21 Identity = 52/80 (65.00%), Postives = 60/80 (75.00%), Query Frame = 2
Query: 11 FTFQFDDRGLILISEHLPKLQSLNLCETAVTDEGLNALVFLENLQILNLNSTKLSALTYEMLKEKLQELKVVDLRYTEAW 250
++ QF D GL L+SEHL LQ LNLCET VTD GL AL +++L LN+NSTKLSA TYE LK KL LK VD+RYTEAW
Sbjct: 694 WSTQFGDAGLRLLSEHLTMLQVLNLCETPVTDAGLLALSSMKSLCSLNMNSTKLSADTYEDLKAKLPNLKEVDVRYTEAW 773
The following BLAST results are available for this feature:
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